Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005836

Physical Location & Seq

Genomic Coordinates Forward (+)

12546472 .. 12549210

Gene Structure 2739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g14170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGCTGACGCAACCCACAAACTGCATCAAACCCACCTCCAACATCCTCTTCTCTTTCAACTCTATCCCCAAGTCTTTCTTCAAGCTACATCCACCCTTAAACCCCAGAACCCTCTCATTGAAACACCACTGCTCACAGTATCCAAACCCAACTCCATCCTCATCTTCTTCTTCTTCTCCATTCCAACCCCTAAGCTCAATCTTAAGGATCATACCGGACTGGGCCGACGAAATCAAAGAGCGTGGCTTTAGACAGGACAGAACACTCTATGACCATGAGAAATGGGTTCACCACAGAAGCTCCTACCGCCACCTCCGCCACTTTCTCACCAGCCTTTCCTCCAGGGTGATTTTGTCTTTAATTCCTCCGGTGATTGCTTTCACCTTGGTGGCAGTGGTGATTGCAAGCTACAATACAGCAGTAGCATTGGAGTGGCTGCCGGAGGTTTTCCCCATGTTGAGATCCTCAACTTTGCCGTACCAGCTCACTGCGCCGGCTTTGGCGCTGCTGTTGGTGTTCAGGACAGAGGCTTCCTATTCGAGGTTTGAAGAAGGGAGGAAGGCTTGGACTAAAGTGATTGCAGGGACTAATGATTTTGCGAGGCAGATCATATCTGGAGTTGAGAATTCGGGTGATGCAGAGCTAAAGAAGGCACTTTTGCAGTATGTTGTGGCCTTCCCGGTTGCACTTAAGTGTCATGTCATTTATGGCTCAAATATGGGACGAGACCTCCAAAATTTGCTTGAAGTAGATGATCTGCTTGTCGTTTTAAGCTCAAAGCATGGACCTGGCTGCATTATTGAATTCATCTCCCAGAACATCCGAATGCTAAAGTTGGAGGAATCAAGGAGAAATATGTTGGAATCAAATATGTCTTGTTTCCATGAAGGAATTAGTGTATGTGAAAATCTCATCGGTACTCCCATTCCTCTTTCTTACACACGCTTGACTTCAAGGTTTCTAGTCCTCTGGCATCTCACTCTCCCTATCATACTTTGGGATGACTGCCACTGGATTGTGGTTCCTGCTACCTTTATTAGTGCTGCTTCATTGTTCTGCATTGAGGAAGTCGGTGTTCTCATTGAGGAGCCATTTCCAATGCTCGCCCTTGACGACCTTTGCAGATCTGTTCAAGAGAATGTACAGGAGGCTCTTTCAAGAGAAAAACTAATTCAAGCACGGCTTACTGCAAAAGGAAGGATCCAAAAGCAGCAGCACTGCCCAAATGGTCAGCCGAAGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005247 GO:0005253 GO:0005254 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006996 GO:0008150 GO:0008152 GO:0008308 GO:0008509 GO:0009507 GO:0009532 GO:0009533 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010109 GO:0015075 GO:0015103 GO:0015108 GO:0015267 GO:0015318 GO:0015698 GO:0015979 GO:0016020 GO:0016043 GO:0019222 GO:0019684 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031323 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042548 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0061024 GO:0065007 GO:0071840 GO:0098656 GO:0098660 GO:0098661 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bestrophin

Protein Analysis

415

Amino Acids

46.81

Weight (kDa)

8.48

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bestrophin_2	PF25539	94 - 383	6e-85	Bacterial/Fungal Bestrophin protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45870 AT2G45870 AT2G45870 AT3G61320 AT3G61320 AT3G61320 AT3G61320
fragaria_vesca	FvH4_7g14170
malus_domestica	MD01G1057600.v1.1 MD01G1202300.v1.1 MD07G1139000.v1.1
prunus_persica	Prupe.2G168100_v2.0.a1 Prupe.2G168100_v2.0.a1 Prupe.2G168100_v2.0.a1
pyrus_communis	pycom01g08760 pycom07g13600
rosa_chinensis	RchiOBHm_Chr1g0355071
rosa_laevigata	RLG00000028179
rosa_multiflora	Rmu_sc0003115.1_g000030
rosa_roxburghii	Rroxscaffold_4G00300690
rosa_rugosa	Rorug01G0244900
rosa_samantha	Rh1AG257200 Rh1BG226500 Rh1CG240800 Rh1DG254100 Rh4DG156900
rosa_wichuraiana	Rw0G011210 Rw1G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	307, 316
AclWI	GGATC	4 cut(s)	215, 456, 1195, 1208
AcsI	RAATTY	3 cut(s)	625, 736, 803
AfaI	GTAC	3 cut(s)	479, 919, 1143
AfiI	CCNNNNNNNGG	1 cut(s)	540
AflII	CTTAAG	2 cut(s)	202, 689
AjnI	CCWGG	2 cut(s)	341, 787
AjuI	GAANNNNNNNTTGG	4 cut(s)	32, 62, 64, 94
AleI	CACNNNNGTG	2 cut(s)	386, 691
AluBI	AGCT	7 cut(s)	85, 195, 300, 408, 484, 643, 774
AluI	AGCT	7 cut(s)	85, 195, 300, 408, 484, 643, 774
Alw26I	GTCTC	1 cut(s)	720
AlwI	GGATC	4 cut(s)	215, 456, 1195, 1208
AoxI	GGCC	2 cut(s)	222, 672
ApeKI	GCWGC	6 cut(s)	436, 505, 792, 1043, 1210, 1213
ApoI	RAATTY	3 cut(s)	625, 736, 803
AspLEI	GCGC	2 cut(s)	493, 505
AspS9I	GGNCC	2 cut(s)	222, 785
AsuC2I	CCSGG	1 cut(s)	680
AsuHPI	GGTGA	7 cut(s)	281, 319, 358, 373, 382, 409, 644
AvaII	GGWCC	1 cut(s)	785
BamHI	GGATCC	1 cut(s)	1200
BbvI	GCAGC	6 cut(s)	423, 492, 779, 1030, 1222, 1225
BccI	CCATC	1 cut(s)	163
BceAI	ACGGC	2 cut(s)	460, 1196
BciT130I	CCWGG	2 cut(s)	343, 789
BciVI	GTATCC	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	680
BcoDI	GTCTC	1 cut(s)	720
BfaI	CTAG	2 cut(s)	962, 1243
BfoI	RGCGCY	1 cut(s)	506
BfrI	CTTAAG	2 cut(s)	202, 689
BfuI	GTATCC	1 cut(s)	150
BglII	AGATCT	1 cut(s)	1124
BisI	GCNGC	6 cut(s)	437, 506, 793, 1044, 1211, 1214
BlsI	GCNGC	6 cut(s)	438, 507, 794, 1045, 1212, 1215
Bme1390I	CCNGG	3 cut(s)	343, 680, 789
Bme18I	GGWCC	1 cut(s)	785
BmgT120I	GGNCC	2 cut(s)	222, 785
BmiI	GGNNCC	3 cut(s)	1023, 1089, 1202
BmrFI	CCNGG	3 cut(s)	343, 680, 789
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	3 cut(s)	33, 625, 982
BmuI	ACTGGG	1 cut(s)	229
BpmI	CTGGAG	2 cut(s)	325, 636
Bpu10I	CCTNAGC	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	680
BsaI	GGTCTC	1 cut(s)	720
BsaJI	CCNNGG	2 cut(s)	342, 384
BsaWI	WCCGGW	2 cut(s)	214, 367
BsaXI	ACNNNNNCTCC	4 cut(s)	284, 314, 714, 744
Bsc4I	CCNNNNNNNGG	1 cut(s)	540
Bse118I	RCCGGY	1 cut(s)	493
Bse1I	ACTGG	2 cut(s)	224, 1016
BseBI	CCWGG	2 cut(s)	343, 789
BseDI	CCNNGG	2 cut(s)	342, 384
BseGI	GGATG	5 cut(s)	42, 88, 155, 819, 1006
BseLI	CCNNNNNNNGG	1 cut(s)	540
BseNI	ACTGG	2 cut(s)	224, 1016
BseRI	GAGGAG	1 cut(s)	1100
BseXI	GCAGC	6 cut(s)	423, 492, 779, 1030, 1222, 1225
BshFI	GGCC	2 cut(s)	224, 674
BsiSI	CCGG	5 cut(s)	215, 368, 440, 494, 680
BslFI	GGGAC	2 cut(s)	598, 735
BslI	CCNNNNNNNGG	1 cut(s)	540
BsmAI	GTCTC	1 cut(s)	720
BsmFI	GGGAC	2 cut(s)	598, 735
BsmI	GAATGC	1 cut(s)	831
BsnI	GGCC	2 cut(s)	224, 674
Bso31I	GGTCTC	1 cut(s)	720
Bsp1407I	TGTACA	1 cut(s)	1141
Bsp143I	GATC	6 cut(s)	207, 461, 606, 754, 1124, 1200
BspACI	CCGC	2 cut(s)	307, 316
BspANI	GGCC	2 cut(s)	224, 674
BspLI	GGNNCC	3 cut(s)	1023, 1089, 1202
BspPI	GGATC	4 cut(s)	215, 456, 1195, 1208
BspTI	CTTAAG	2 cut(s)	202, 689
BspTNI	GGTCTC	1 cut(s)	720
BsrFI	RCCGGY	1 cut(s)	493
BsrGI	TGTACA	1 cut(s)	1141
BsrI	ACTGG	2 cut(s)	224, 1016
BssAI	RCCGGY	1 cut(s)	493
BssECI	CCNNGG	2 cut(s)	342, 384
BssMI	GATC	6 cut(s)	207, 461, 606, 754, 1124, 1200
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	2 cut(s)	343, 789
Bst4CI	ACNGT	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	53
BstAFI	CTTAAG	2 cut(s)	202, 689
BstAUI	TGTACA	1 cut(s)	1141
BstC8I	GCNNGC	3 cut(s)	406, 495, 1104
BstDEI	CTNAG	1 cut(s)	191
BstENI	CCTNNNNNAGG	1 cut(s)	538
BstF5I	GGATG	5 cut(s)	42, 88, 155, 819, 1006
BstH2I	RGCGCY	1 cut(s)	506
BstHHI	GCGC	2 cut(s)	493, 505
BstKTI	GATC	6 cut(s)	210, 464, 609, 757, 1127, 1203
BstMAI	GTCTC	1 cut(s)	720
BstMBI	GATC	6 cut(s)	207, 461, 606, 754, 1124, 1200
BstMWI	GCNNNNNNNGC	4 cut(s)	306, 315, 481, 490
BstNI	CCWGG	2 cut(s)	343, 789
BstSCI	CCNGG	3 cut(s)	341, 678, 787
BstV1I	GCAGC	6 cut(s)	423, 492, 779, 1030, 1222, 1225
BstX2I	RGATCY	3 cut(s)	461, 1124, 1200
BstYI	RGATCY	3 cut(s)	461, 1124, 1200
BsuI	GTATCC	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	224, 674
BtsCI	GGATG	5 cut(s)	42, 88, 155, 819, 1006
BtsI	GCAGTG	4 cut(s)	127, 399, 486, 1216
BtsIMutI	CAGTG	5 cut(s)	127, 399, 486, 1009, 1216
Cac8I	GCNNGC	3 cut(s)	406, 495, 1104
CfoI	GCGC	2 cut(s)	493, 505
Cfr10I	RCCGGY	1 cut(s)	493
Cfr13I	GGNCC	2 cut(s)	222, 785
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	3 cut(s)	478, 918, 1142
CspCI	CAANNNNNGTGG	2 cut(s)	223, 258
CviAII	CATG	5 cut(s)	275, 454, 698, 782, 884
CviQI	GTAC	3 cut(s)	478, 918, 1142
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	6 cut(s)	209, 463, 608, 756, 1126, 1202
DpnII	GATC	6 cut(s)	207, 461, 606, 754, 1124, 1200
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EciI	GGCGGA	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	720
Eco47I	GGWCC	1 cut(s)	785
EcoNI	CCTNNNNNAGG	1 cut(s)	538
EcoRI	GAATTC	2 cut(s)	625, 803
EcoRII	CCWGG	2 cut(s)	341, 787
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	5 cut(s)	278, 457, 701, 785, 887
FalI	AAGNNNNNCTT	4 cut(s)	62, 94, 1167, 1199
FaqI	GGGAC	2 cut(s)	598, 735
FatI	CATG	5 cut(s)	274, 453, 697, 781, 883
Fnu4HI	GCNGC	6 cut(s)	437, 506, 793, 1044, 1211, 1214
FokI	GGATG	5 cut(s)	29, 75, 142, 806, 1013
Fsp4HI	GCNGC	6 cut(s)	437, 506, 793, 1044, 1211, 1214
FspBI	CTAG	2 cut(s)	962, 1243
GlaI	GCGC	2 cut(s)	492, 504
GluI	GCNGC	6 cut(s)	437, 506, 793, 1044, 1211, 1214
GsuI	CTGGAG	2 cut(s)	325, 636
HaeII	RGCGCY	1 cut(s)	506
HaeIII	GGCC	2 cut(s)	224, 674
HapII	CCGG	5 cut(s)	215, 368, 440, 494, 680
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	2 cut(s)	493, 505
Hin1II	CATG	5 cut(s)	278, 457, 701, 785, 887
Hin6I	GCGC	2 cut(s)	491, 503
HinP1I	GCGC	2 cut(s)	491, 503
HinfI	GANTC	2 cut(s)	842, 863
HpaII	CCGG	5 cut(s)	215, 368, 440, 494, 680
HphI	GGTGA	7 cut(s)	281, 319, 358, 373, 382, 409, 644
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	1 cut(s)	824
Hpy188III	TCNNGA	4 cut(s)	520, 615, 1133, 1158
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	6 cut(s)	545, 553, 643, 685, 881, 1191
HpyCH4III	ACNGT	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	4 cut(s)	306, 315, 481, 490
HpyF3I	CTNAG	1 cut(s)	191
Hsp92II	CATG	5 cut(s)	278, 457, 701, 785, 887
HspAI	GCGC	2 cut(s)	491, 503
KroI	GCCGGC	1 cut(s)	493
KroNI	GCCGGC	1 cut(s)	495
Kzo9I	GATC	6 cut(s)	207, 461, 606, 754, 1124, 1200
LmnI	GCTCC	2 cut(s)	305, 1087
Lsp1109I	GCAGC	6 cut(s)	423, 492, 779, 1030, 1222, 1225
LweI	GCATC	3 cut(s)	33, 625, 982
MaeI	CTAG	2 cut(s)	962, 1243
MalI	GATC	6 cut(s)	209, 463, 608, 756, 1126, 1202
MboI	GATC	6 cut(s)	207, 461, 606, 754, 1124, 1200
MboII	GAAGA	7 cut(s)	40, 70, 156, 159, 162, 165, 560
MflI	RGATCY	3 cut(s)	461, 1124, 1200
MluCI	AATT	6 cut(s)	360, 625, 736, 803, 891, 1170
MmeI	TCCRAC	4 cut(s)	63, 208, 816, 840
MroNI	GCCGGC	1 cut(s)	493
MseI	TTAA	5 cut(s)	98, 203, 359, 690, 770
MslI	CAYNNNNRTG	4 cut(s)	386, 430, 691, 824
MspCI	CTTAAG	2 cut(s)	202, 689
MspI	CCGG	5 cut(s)	215, 368, 440, 494, 680
MspR9I	CCNGG	3 cut(s)	343, 680, 789
Mva1269I	GAATGC	1 cut(s)	831
MvaI	CCWGG	2 cut(s)	343, 789
MwoI	GCNNNNNNNGC	4 cut(s)	306, 315, 481, 490
NaeI	GCCGGC	1 cut(s)	495
NciI	CCSGG	1 cut(s)	680
NdeII	GATC	6 cut(s)	207, 461, 606, 754, 1124, 1200
NgoMIV	GCCGGC	1 cut(s)	493
NlaIII	CATG	5 cut(s)	278, 457, 701, 785, 887
NlaIV	GGNNCC	3 cut(s)	1023, 1089, 1202
OliI	CACNNNNGTG	2 cut(s)	386, 691
PcsI	WCGNNNNNNNCGW	1 cut(s)	1110
PctI	GAATGC	1 cut(s)	831
PdiI	GCCGGC	1 cut(s)	495
PfeI	GAWTC	2 cut(s)	842, 863
PkrI	GCNGC	6 cut(s)	438, 507, 794, 1045, 1212, 1215
Psp6I	CCWGG	2 cut(s)	341, 787
PspGI	CCWGG	2 cut(s)	341, 787
PspN4I	GGNNCC	3 cut(s)	1023, 1089, 1202
PspPI	GGNCC	2 cut(s)	222, 785
PsuI	RGATCY	3 cut(s)	461, 1124, 1200
RsaI	GTAC	3 cut(s)	479, 919, 1143
RsaNI	GTAC	3 cut(s)	478, 918, 1142
RseI	CAYNNNNRTG	4 cut(s)	386, 430, 691, 824
SaqAI	TTAA	5 cut(s)	98, 203, 359, 690, 770
SatI	GCNGC	6 cut(s)	437, 506, 793, 1044, 1211, 1214
Sau3AI	GATC	6 cut(s)	207, 461, 606, 754, 1124, 1200
Sau96I	GGNCC	2 cut(s)	222, 785
ScrFI	CCNGG	3 cut(s)	343, 680, 789
SfaNI	GCATC	3 cut(s)	33, 625, 982
SinI	GGWCC	1 cut(s)	785
SmiMI	CAYNNNNRTG	4 cut(s)	386, 430, 691, 824
SmlI	CTYRAG	2 cut(s)	202, 689
SmoI	CTYRAG	2 cut(s)	202, 689
Sse9I	AATT	6 cut(s)	360, 625, 736, 803, 891, 1170
SsiI	CCGC	2 cut(s)	307, 316
SspMI	CTAG	2 cut(s)	962, 1243
StyD4I	CCNGG	3 cut(s)	341, 678, 787
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	138
TaqI	TCGA	1 cut(s)	539
TasI	AATT	6 cut(s)	360, 625, 736, 803, 891, 1170
TatI	WGTACW	1 cut(s)	1141
TfiI	GAWTC	2 cut(s)	842, 863
Tru1I	TTAA	5 cut(s)	98, 203, 359, 690, 770
Tru9I	TTAA	5 cut(s)	98, 203, 359, 690, 770
TscAI	CASTG	5 cut(s)	134, 399, 493, 1016, 1223
TseI	GCWGC	6 cut(s)	436, 505, 792, 1043, 1210, 1213
TspDTI	ATGAA	3 cut(s)	796, 900, 1038
TspRI	CASTG	5 cut(s)	134, 399, 493, 1016, 1223
Vha464I	CTTAAG	2 cut(s)	202, 689
VpaK11BI	GGWCC	1 cut(s)	785
XagI	CCTNNNNNAGG	1 cut(s)	538
XapI	RAATTY	3 cut(s)	625, 736, 803
XspI	CTAG	2 cut(s)	962, 1243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.