Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005836

Physical Location & Seq

Genomic Coordinates Forward (+)

50077965 .. 50080814

Gene Structure 2850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG240800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCTGACGCAACCCACAAACTGCACCAAACCCACCTCCAACATCCTCTTCTCTTCCAACTCTATCCCCAAGACTTTCTCAGGATTACATCCACGCCTTCCCCTGCATCCCAGAACCCTCTCATTCAAACTCCACTGCTCGCAGTATCCAAACCCAACTCCATCCTCATCATCTTCTTCTCCATTCCAACCCCTAATCTCGATCCTCCAGGTCATACCGGACTGGGCCGACGCAATCAAAGAGCGTGGCTTTAGACAGGACAGAACACTCTATGACCATGAGAAATGGGTTCACCACAGAAGCTCCTACCGCCACCTCCGCCACTTCCTCACCAGCCTTTCCTCGAGGGTGATTTTGTCTTTAATTCCTCCGGTGATTGCTTTCACCTTGGTGGCAGTGGTGATTGCCAGCTACAATACAGCAGTTGCATTGGAGTGGCTTCCGGAATTTTTCCCCATCTTGAGGTCCTCAACTCTGCCGTACCAGCTCACAGCGCCAGCATTGGCGCTGTTGTTGGTGTTCAGGACAGAGGCTTCTTATTCGAGGTTTGAAGAAGGGAGGAAGGCTTGGACTAAAGTGATTGCCGGGGCTAATGATTTTGCCAGGCAGATCATTTCCGGAGTTGAGAATCCTGGTGATGCAGAGCTAAAGAAGGCACTTTTGCAGTATGTTGTGGCCTTCCCGGTTGCACTCAAGTGTCATGTCATTTATGGCTCAAATATGGGACGTGACCTCCAAAATTTGCTTGAACTAGATGACCTGCTAGTTGTTTTAAGCTCAAAACATGGACCTGGCTGCATTATTGAGTTCATCTCCCAGAACATCCGAATGCTAAAGTTGGAGGAATCAAGGAGAAATATGTTGGTAATCACCTCCTCAATTAACAAGACACTCAAGTTACTATTTTACCTTGAAACTTTGTTCTCAGTTATCCCGGAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005247 GO:0005253 GO:0005254 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006996 GO:0008150 GO:0008152 GO:0008308 GO:0008509 GO:0009507 GO:0009532 GO:0009533 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010109 GO:0015075 GO:0015103 GO:0015108 GO:0015267 GO:0015318 GO:0015698 GO:0015979 GO:0016020 GO:0016043 GO:0019222 GO:0019684 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031323 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042548 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0061024 GO:0065007 GO:0071840 GO:0098656 GO:0098660 GO:0098661 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bestrophin

Protein Analysis

314

Amino Acids

35.43

Weight (kDa)

9.35

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bestrophin_2	PF25539	95 - 293	1.5e-43	Bacterial/Fungal Bestrophin protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45870 AT2G45870 AT2G45870 AT3G61320 AT3G61320 AT3G61320 AT3G61320
fragaria_vesca	FvH4_7g14170
malus_domestica	MD01G1057600.v1.1 MD01G1202300.v1.1 MD07G1139000.v1.1
prunus_persica	Prupe.2G168100_v2.0.a1 Prupe.2G168100_v2.0.a1 Prupe.2G168100_v2.0.a1
pyrus_communis	pycom01g08760 pycom07g13600
rosa_chinensis	RchiOBHm_Chr1g0355071
rosa_laevigata	RLG00000028179
rosa_multiflora	Rmu_sc0003115.1_g000030
rosa_roxburghii	Rroxscaffold_4G00300690
rosa_rugosa	Rorug01G0244900
rosa_samantha	Rh1AG257200 Rh1BG226500 Rh1CG240800 Rh1DG254100 Rh4DG156900
rosa_wichuraiana	Rw0G011210 Rw1G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	343
Acc36I	ACCTGC	1 cut(s)	768
AccIII	TCCGGA	2 cut(s)	442, 617
AciI	CCGC	2 cut(s)	310, 319
AclWI	GGATC	1 cut(s)	196
AcsI	RAATTY	2 cut(s)	446, 739
AfaI	GTAC	1 cut(s)	482
AfiI	CCNNNNNNNGG	1 cut(s)	462
AgsI	TTSAA	4 cut(s)	127, 551, 749, 914
AjiI	CACGTC	1 cut(s)	728
AjnI	CCWGG	4 cut(s)	207, 602, 631, 790
AjuI	GAANNNNNNNTTGG	2 cut(s)	32, 64
AleI	CACNNNNGTG	2 cut(s)	389, 694
AluBI	AGCT	6 cut(s)	303, 411, 487, 646, 777, 940
AluI	AGCT	6 cut(s)	303, 411, 487, 646, 777, 940
Alw21I	GWGCWC	1 cut(s)	942
AlwI	GGATC	1 cut(s)	196
Ama87I	CYCGRG	1 cut(s)	343
Aor13HI	TCCGGA	2 cut(s)	442, 617
AoxI	GGCC	2 cut(s)	225, 675
ApeKI	GCWGC	1 cut(s)	795
ApoI	RAATTY	2 cut(s)	446, 739
AspLEI	GCGC	2 cut(s)	496, 508
AspS9I	GGNCC	3 cut(s)	225, 465, 788
AsuC2I	CCSGG	3 cut(s)	586, 683, 935
AsuHPI	GGTGA	8 cut(s)	284, 322, 361, 376, 385, 412, 647, 862
AvaI	CYCGRG	1 cut(s)	343
AvaII	GGWCC	2 cut(s)	465, 788
BanII	GRGCYC	1 cut(s)	942
Bbv12I	GWGCWC	1 cut(s)	942
BbvI	GCAGC	1 cut(s)	782
BccI	CCATC	2 cut(s)	169, 464
BceAI	ACGGC	1 cut(s)	463
BciT130I	CCWGG	4 cut(s)	209, 604, 633, 792
BciVI	GTATCC	1 cut(s)	156
BcnI	CCSGG	3 cut(s)	586, 683, 935
BfaI	CTAG	3 cut(s)	752, 764, 943
BfoI	RGCGCY	2 cut(s)	497, 509
BfuAI	ACCTGC	1 cut(s)	768
BfuI	GTATCC	1 cut(s)	156
BisI	GCNGC	1 cut(s)	796
BlsI	GCNGC	1 cut(s)	797
Bme1390I	CCNGG	7 cut(s)	209, 586, 604, 633, 683, 792, 935
Bme18I	GGWCC	2 cut(s)	465, 788
BmeT110I	CYCGRG	1 cut(s)	343
BmgBI	CACGTC	1 cut(s)	728
BmgT120I	GGNCC	3 cut(s)	225, 465, 788
BmrFI	CCNGG	7 cut(s)	209, 586, 604, 633, 683, 792, 935
BmrI	ACTGGG	1 cut(s)	232
BmsI	GCATC	2 cut(s)	115, 628
BmuI	ACTGGG	1 cut(s)	232
BplI	GAGNNNNNCTC	2 cut(s)	797, 829
BpmI	CTGGAG	1 cut(s)	191
BpuEI	CTTGAG	3 cut(s)	481, 677, 878
BpuMI	CCSGG	3 cut(s)	586, 683, 935
BsaJI	CCNNGG	2 cut(s)	387, 585
BsaWI	WCCGGW	4 cut(s)	217, 370, 442, 617
BsaXI	ACNNNNNCTCC	4 cut(s)	287, 317, 717, 747
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse1I	ACTGG	1 cut(s)	227
BseAI	TCCGGA	2 cut(s)	442, 617
BseBI	CCWGG	4 cut(s)	209, 604, 633, 792
BseDI	CCNNGG	2 cut(s)	387, 585
BseGI	GGATG	5 cut(s)	42, 88, 106, 161, 822
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMII	CTCAG	2 cut(s)	93, 939
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	865
BseXI	GCAGC	1 cut(s)	782
BsgI	GTGCAG	1 cut(s)	7
BshFI	GGCC	2 cut(s)	227, 677
BsiHKAI	GWGCWC	1 cut(s)	942
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	7 cut(s)	218, 371, 443, 585, 618, 683, 935
BslFI	GGGAC	1 cut(s)	738
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmFI	GGGAC	1 cut(s)	738
BsmI	GAATGC	1 cut(s)	834
BsnI	GGCC	2 cut(s)	227, 677
BsoBI	CYCGRG	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	942
Bsp13I	TCCGGA	2 cut(s)	442, 617
Bsp143I	GATC	2 cut(s)	201, 609
BspACI	CCGC	2 cut(s)	310, 319
BspANI	GGCC	2 cut(s)	227, 677
BspCNI	CTCAG	2 cut(s)	92, 938
BspEI	TCCGGA	2 cut(s)	442, 617
BspMI	ACCTGC	1 cut(s)	768
BspPI	GGATC	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	387, 585
BssMI	GATC	2 cut(s)	201, 609
BssT1I	CCWWGG	1 cut(s)	387
Bst2UI	CCWGG	4 cut(s)	209, 604, 633, 792
Bst6I	CTCTTC	2 cut(s)	53, 58
BstC8I	GCNNGC	3 cut(s)	140, 409, 498
BstDEI	CTNAG	2 cut(s)	79, 925
BstF5I	GGATG	5 cut(s)	42, 88, 106, 161, 822
BstH2I	RGCGCY	2 cut(s)	497, 509
BstHHI	GCGC	2 cut(s)	496, 508
BstKTI	GATC	2 cut(s)	204, 612
BstMBI	GATC	2 cut(s)	201, 609
BstMWI	GCNNNNNNNGC	4 cut(s)	309, 318, 484, 493
BstNI	CCWGG	4 cut(s)	209, 604, 633, 792
BstSCI	CCNGG	7 cut(s)	207, 584, 602, 631, 681, 790, 933
BstV1I	GCAGC	1 cut(s)	782
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	227, 677
BtrI	CACGTC	1 cut(s)	728
BtsCI	GGATG	5 cut(s)	42, 88, 106, 161, 822
BtsI	GCAGTG	2 cut(s)	133, 402
BtsIMutI	CAGTG	2 cut(s)	133, 402
BveI	ACCTGC	1 cut(s)	768
Cac8I	GCNNGC	3 cut(s)	140, 409, 498
CfoI	GCGC	2 cut(s)	496, 508
Cfr13I	GGNCC	3 cut(s)	225, 465, 788
CseI	GACGC	2 cut(s)	16, 239
Csp6I	GTAC	1 cut(s)	481
CspCI	CAANNNNNGTGG	2 cut(s)	226, 261
CviAII	CATG	3 cut(s)	278, 701, 785
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	2 cut(s)	79, 925
DpnI	GATC	2 cut(s)	203, 611
DpnII	GATC	2 cut(s)	201, 609
Eam1104I	CTCTTC	2 cut(s)	53, 58
EarI	CTCTTC	2 cut(s)	53, 58
EciI	GGCGGA	1 cut(s)	308
Ecl136II	GAGCTC	1 cut(s)	940
Eco130I	CCWWGG	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	942
Eco47I	GGWCC	2 cut(s)	465, 788
Eco53kI	GAGCTC	1 cut(s)	940
Eco88I	CYCGRG	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	940
EcoO109I	RGGNCCY	1 cut(s)	465
EcoRII	CCWGG	4 cut(s)	207, 602, 631, 790
EcoT14I	CCWWGG	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	942
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	3 cut(s)	281, 704, 788
FaiI	YATR	9 cut(s)	215, 273, 279, 669, 702, 711, 722, 786, 860
FaqI	GGGAC	1 cut(s)	738
FatI	CATG	3 cut(s)	277, 700, 784
Fnu4HI	GCNGC	1 cut(s)	796
FokI	GGATG	5 cut(s)	29, 75, 93, 148, 809
FriOI	GRGCYC	1 cut(s)	942
Fsp4HI	GCNGC	1 cut(s)	796
FspBI	CTAG	3 cut(s)	752, 764, 943
GlaI	GCGC	2 cut(s)	495, 507
GluI	GCNGC	1 cut(s)	796
GsuI	CTGGAG	1 cut(s)	191
HaeII	RGCGCY	2 cut(s)	497, 509
HaeIII	GGCC	2 cut(s)	227, 677
HapII	CCGG	7 cut(s)	218, 371, 443, 585, 618, 683, 935
HgaI	GACGC	2 cut(s)	16, 239
HhaI	GCGC	2 cut(s)	496, 508
Hin1II	CATG	3 cut(s)	281, 704, 788
Hin6I	GCGC	2 cut(s)	494, 506
HinP1I	GCGC	2 cut(s)	494, 506
HinfI	GANTC	2 cut(s)	628, 845
HpaII	CCGG	7 cut(s)	218, 371, 443, 585, 618, 683, 935
HphI	GGTGA	8 cut(s)	284, 322, 361, 376, 385, 412, 647, 862
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	827
Hpy188III	TCNNGA	6 cut(s)	81, 199, 443, 460, 523, 618
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	5 cut(s)	107, 548, 556, 646, 688
HpyCH4IV	ACGT	1 cut(s)	727
HpyCH4V	TGCA	7 cut(s)	24, 106, 428, 641, 664, 689, 798
HpyF10VI	GCNNNNNNNGC	4 cut(s)	309, 318, 484, 493
HpyF3I	CTNAG	2 cut(s)	79, 925
HpySE526I	ACGT	1 cut(s)	727
Hsp92II	CATG	3 cut(s)	281, 704, 788
HspAI	GCGC	2 cut(s)	494, 506
Kpn2I	TCCGGA	2 cut(s)	442, 617
Kzo9I	GATC	2 cut(s)	201, 609
LmnI	GCTCC	2 cut(s)	308, 937
Lsp1109I	GCAGC	1 cut(s)	782
LweI	GCATC	2 cut(s)	115, 628
MaeI	CTAG	3 cut(s)	752, 764, 943
MaeII	ACGT	1 cut(s)	727
MaeIII	GTNAC	2 cut(s)	728, 897
MalI	GATC	2 cut(s)	203, 611
MboI	GATC	2 cut(s)	201, 609
MboII	GAAGA	5 cut(s)	40, 45, 165, 168, 563
MhlI	GDGCHC	1 cut(s)	942
MluCI	AATT	4 cut(s)	363, 446, 739, 879
MmeI	TCCRAC	4 cut(s)	63, 81, 211, 819
MroI	TCCGGA	2 cut(s)	442, 617
MseI	TTAA	3 cut(s)	362, 773, 882
MslI	CAYNNNNRTG	4 cut(s)	389, 433, 694, 827
MspI	CCGG	7 cut(s)	218, 371, 443, 585, 618, 683, 935
MspR9I	CCNGG	7 cut(s)	209, 586, 604, 633, 683, 792, 935
Mva1269I	GAATGC	1 cut(s)	834
MvaI	CCWGG	4 cut(s)	209, 604, 633, 792
MwoI	GCNNNNNNNGC	4 cut(s)	309, 318, 484, 493
NciI	CCSGG	3 cut(s)	586, 683, 935
NdeII	GATC	2 cut(s)	201, 609
NlaIII	CATG	3 cut(s)	281, 704, 788
NmuCI	GTSAC	1 cut(s)	728
OliI	CACNNNNGTG	2 cut(s)	389, 694
PaeR7I	CTCGAG	1 cut(s)	343
PctI	GAATGC	1 cut(s)	834
PfeI	GAWTC	2 cut(s)	628, 845
PfoI	TCCNGGA	1 cut(s)	933
PkrI	GCNGC	1 cut(s)	797
PpuMI	RGGWCCY	1 cut(s)	465
Psp124BI	GAGCTC	1 cut(s)	942
Psp5II	RGGWCCY	1 cut(s)	465
Psp6I	CCWGG	4 cut(s)	207, 602, 631, 790
PspGI	CCWGG	4 cut(s)	207, 602, 631, 790
PspPI	GGNCC	3 cut(s)	225, 465, 788
PspPPI	RGGWCCY	1 cut(s)	465
PspXI	VCTCGAGB	1 cut(s)	343
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
RseI	CAYNNNNRTG	4 cut(s)	389, 433, 694, 827
SacI	GAGCTC	1 cut(s)	942
SaqAI	TTAA	3 cut(s)	362, 773, 882
SatI	GCNGC	1 cut(s)	796
Sau3AI	GATC	2 cut(s)	201, 609
Sau96I	GGNCC	3 cut(s)	225, 465, 788
ScrFI	CCNGG	7 cut(s)	209, 586, 604, 633, 683, 792, 935
SduI	GDGCHC	1 cut(s)	942
SfaNI	GCATC	2 cut(s)	115, 628
Sfr274I	CTCGAG	1 cut(s)	343
SinI	GGWCC	2 cut(s)	465, 788
SlaI	CTCGAG	1 cut(s)	343
SmiMI	CAYNNNNRTG	4 cut(s)	389, 433, 694, 827
SmlI	CTYRAG	4 cut(s)	343, 460, 692, 893
SmoI	CTYRAG	4 cut(s)	343, 460, 692, 893
Sse9I	AATT	4 cut(s)	363, 446, 739, 879
SsiI	CCGC	2 cut(s)	310, 319
SspMI	CTAG	3 cut(s)	752, 764, 943
SstI	GAGCTC	1 cut(s)	942
StyD4I	CCNGG	7 cut(s)	207, 584, 602, 631, 681, 790, 933
StyI	CCWWGG	1 cut(s)	387
TaiI	ACGT	1 cut(s)	730
TaqI	TCGA	3 cut(s)	200, 344, 542
TasI	AATT	4 cut(s)	363, 446, 739, 879
TfiI	GAWTC	2 cut(s)	628, 845
Tru1I	TTAA	3 cut(s)	362, 773, 882
Tru9I	TTAA	3 cut(s)	362, 773, 882
TscAI	CASTG	2 cut(s)	140, 402
TseFI	GTSAC	1 cut(s)	728
TseI	GCWGC	1 cut(s)	795
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	1 cut(s)	799
TspRI	CASTG	2 cut(s)	140, 402
VpaK11BI	GGWCC	2 cut(s)	465, 788
XapI	RAATTY	2 cut(s)	446, 739
XhoI	CTCGAG	1 cut(s)	343
XspI	CTAG	3 cut(s)	752, 764, 943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.