Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005836

Physical Location & Seq

Genomic Coordinates Forward (+)

34650975 .. 34653859

Gene Structure 2885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG226500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGCTGACGCAACCCACAAACTGCATCAAACCCACCTCCAACATCCTCTTCTCTTCCAACTCCATCCCCAAGACTTTCTCAAGATTACATCCACGCCTTCCCCTGCATCCCAGAACCCTCTCATTCAAACTCCACTGCTCACAGTATCCAAACCCAACTCCATCCTCATCTTCTTCTTCTTCTCCATTCCAACCCCTAATCTCAATCCTCCAGGTCATACCGGACTGGGCCGACGAAATCAAAGAGCGTGGCTTCAGACAGAACAGAACACTCTATGACCATGAGAAATGGGTTCACCACAGAAGCTCCTACCGCCACCTTCGGCACTTCCTCACCAGCCTTTCCTCGAGGGTGATTTTGTCTTTAATTCCTCCGGTGATTGCTTTCACCTTGGTGGCAGTGGTCATTGCCAGCTACAATACAGCAGTCGCATTGGAGTGGCTTCCGGAATTTTTCCCCATCTTGAGGTCCTCAACTCTGCCGTACCAGCTCACAGCGCCGGCATTGGCGCTGTTGTTGGTGTTCAGGACAGAGGCTTCTTATTCGAGGTTTGATGAAGGGAGGAAGGCTTGGACTAAAGTGATTGCCGGGGCTAATGATTTTGCCAGGCAGATCATTTCCGGAGTTGAGAATCCTGGTGATGCAGAGCTAAAGAAGGCACTTTTGCAGTATGTTGTGGCCTTCCCGGTTGCACTTAAGTGTCATGTCATTTATGGTTCAAATATGGGACGTGACCTCCAAAATTTGCTTGAACTAGATGACCTGCTAGTTGTTTTGAGCTCAAAGCATGGACCTGGCTGCATTATTGAGTTCATCTCCCAGAACATCCGAATGCTAAAGTTGGACGAATCAAGGAGAAATATGTTGGTAATCACCTCCTCAATTAACAAGACACTCAAGTTACTATTTTACCTTGAAACTTTGTTCTCAGTTATCCTGGTGCTCTTGTTCGATGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005247 GO:0005253 GO:0005254 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006996 GO:0008150 GO:0008152 GO:0008308 GO:0008509 GO:0009507 GO:0009532 GO:0009533 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010109 GO:0015075 GO:0015103 GO:0015108 GO:0015267 GO:0015318 GO:0015698 GO:0015979 GO:0016020 GO:0016043 GO:0019222 GO:0019684 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031323 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042548 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0061024 GO:0065007 GO:0071840 GO:0098656 GO:0098660 GO:0098661 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bestrophin

Protein Analysis

320

Amino Acids

36.25

Weight (kDa)

9.35

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bestrophin_2	PF25539	96 - 294	1.2e-43	Bacterial/Fungal Bestrophin protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45870 AT2G45870 AT2G45870 AT3G61320 AT3G61320 AT3G61320 AT3G61320
fragaria_vesca	FvH4_7g14170
malus_domestica	MD01G1057600.v1.1 MD01G1202300.v1.1 MD07G1139000.v1.1
prunus_persica	Prupe.2G168100_v2.0.a1 Prupe.2G168100_v2.0.a1 Prupe.2G168100_v2.0.a1
pyrus_communis	pycom01g08760 pycom07g13600
rosa_chinensis	RchiOBHm_Chr1g0355071
rosa_laevigata	RLG00000028179
rosa_multiflora	Rmu_sc0003115.1_g000030
rosa_roxburghii	Rroxscaffold_4G00300690
rosa_rugosa	Rorug01G0244900
rosa_samantha	Rh1AG257200 Rh1BG226500 Rh1CG240800 Rh1DG254100 Rh4DG156900
rosa_wichuraiana	Rw0G011210 Rw1G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	346
Acc36I	ACCTGC	1 cut(s)	771
AccIII	TCCGGA	2 cut(s)	445, 620
AciI	CCGC	1 cut(s)	313
AcsI	RAATTY	2 cut(s)	449, 742
AcuI	CTGAAG	1 cut(s)	238
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	1 cut(s)	465
AflII	CTTAAG	1 cut(s)	695
AgsI	TTSAA	4 cut(s)	127, 720, 752, 917
AjiI	CACGTC	1 cut(s)	731
AjnI	CCWGG	5 cut(s)	210, 605, 634, 793, 936
AjuI	GAANNNNNNNTTGG	2 cut(s)	32, 64
AleI	CACNNNNGTG	2 cut(s)	392, 697
AluBI	AGCT	5 cut(s)	306, 414, 490, 649, 780
AluI	AGCT	5 cut(s)	306, 414, 490, 649, 780
Alw21I	GWGCWC	2 cut(s)	782, 945
Ama87I	CYCGRG	1 cut(s)	346
Aor13HI	TCCGGA	2 cut(s)	445, 620
AoxI	GGCC	2 cut(s)	228, 678
ApeKI	GCWGC	1 cut(s)	798
ApoI	RAATTY	2 cut(s)	449, 742
AspLEI	GCGC	2 cut(s)	499, 511
AspS9I	GGNCC	3 cut(s)	228, 468, 791
AsuC2I	CCSGG	2 cut(s)	589, 686
AsuHPI	GGTGA	7 cut(s)	287, 325, 364, 379, 388, 650, 865
AvaI	CYCGRG	1 cut(s)	346
AvaII	GGWCC	2 cut(s)	468, 791
BanII	GRGCYC	1 cut(s)	782
Bbv12I	GWGCWC	2 cut(s)	782, 945
BbvI	GCAGC	1 cut(s)	785
BccI	CCATC	3 cut(s)	71, 169, 467
BceAI	ACGGC	1 cut(s)	466
BciT130I	CCWGG	5 cut(s)	212, 607, 636, 795, 938
BciVI	GTATCC	1 cut(s)	156
BcnI	CCSGG	2 cut(s)	589, 686
BfaI	CTAG	2 cut(s)	755, 767
BfoI	RGCGCY	2 cut(s)	500, 512
BfrI	CTTAAG	1 cut(s)	695
BfuAI	ACCTGC	1 cut(s)	771
BfuI	GTATCC	1 cut(s)	156
BisI	GCNGC	1 cut(s)	799
BlsI	GCNGC	1 cut(s)	800
Bme1390I	CCNGG	7 cut(s)	212, 589, 607, 636, 686, 795, 938
Bme18I	GGWCC	2 cut(s)	468, 791
BmeT110I	CYCGRG	1 cut(s)	346
BmgBI	CACGTC	1 cut(s)	731
BmgT120I	GGNCC	3 cut(s)	228, 468, 791
BmrFI	CCNGG	7 cut(s)	212, 589, 607, 636, 686, 795, 938
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	3 cut(s)	33, 115, 631
BmuI	ACTGGG	1 cut(s)	235
BplI	GAGNNNNNCTC	2 cut(s)	800, 832
BpmI	CTGGAG	1 cut(s)	194
BpuEI	CTTGAG	3 cut(s)	64, 484, 881
BpuMI	CCSGG	2 cut(s)	589, 686
BsaJI	CCNNGG	2 cut(s)	390, 588
BsaWI	WCCGGW	4 cut(s)	220, 373, 445, 620
BsaXI	ACNNNNNCTCC	4 cut(s)	290, 320, 720, 750
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse118I	RCCGGY	1 cut(s)	499
Bse1I	ACTGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	405
BseAI	TCCGGA	2 cut(s)	445, 620
BseBI	CCWGG	5 cut(s)	212, 607, 636, 795, 938
BseDI	CCNNGG	2 cut(s)	390, 588
BseGI	GGATG	6 cut(s)	42, 63, 88, 106, 161, 825
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	1 cut(s)	942
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	1 cut(s)	868
BseXI	GCAGC	1 cut(s)	785
BshFI	GGCC	2 cut(s)	230, 680
BsiHKAI	GWGCWC	2 cut(s)	782, 945
BsiHKCI	CYCGRG	1 cut(s)	346
BsiSI	CCGG	7 cut(s)	221, 374, 446, 500, 588, 621, 686
BslFI	GGGAC	1 cut(s)	741
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmFI	GGGAC	1 cut(s)	741
BsmI	GAATGC	1 cut(s)	837
BsnI	GGCC	2 cut(s)	230, 680
BsoBI	CYCGRG	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	782, 945
Bsp13I	TCCGGA	2 cut(s)	445, 620
Bsp143I	GATC	1 cut(s)	612
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	2 cut(s)	230, 680
BspCNI	CTCAG	1 cut(s)	941
BspEI	TCCGGA	2 cut(s)	445, 620
BspMI	ACCTGC	1 cut(s)	771
BspTI	CTTAAG	1 cut(s)	695
BsrDI	GCAATG	1 cut(s)	405
BsrFI	RCCGGY	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	230
BssAI	RCCGGY	1 cut(s)	499
BssECI	CCNNGG	2 cut(s)	390, 588
BssMI	GATC	1 cut(s)	612
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	5 cut(s)	212, 607, 636, 795, 938
Bst4CI	ACNGT	1 cut(s)	144
Bst6I	CTCTTC	2 cut(s)	53, 58
BstAFI	CTTAAG	1 cut(s)	695
BstC8I	GCNNGC	2 cut(s)	412, 501
BstDEI	CTNAG	1 cut(s)	928
BstF5I	GGATG	6 cut(s)	42, 63, 88, 106, 161, 825
BstH2I	RGCGCY	2 cut(s)	500, 512
BstHHI	GCGC	2 cut(s)	499, 511
BstKTI	GATC	1 cut(s)	615
BstMBI	GATC	1 cut(s)	612
BstMWI	GCNNNNNNNGC	3 cut(s)	312, 487, 496
BstNI	CCWGG	5 cut(s)	212, 607, 636, 795, 938
BstSCI	CCNGG	7 cut(s)	210, 587, 605, 634, 684, 793, 936
BstV1I	GCAGC	1 cut(s)	785
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	230, 680
BtrI	CACGTC	1 cut(s)	731
BtsCI	GGATG	6 cut(s)	42, 63, 88, 106, 161, 825
BtsI	GCAGTG	2 cut(s)	133, 405
BtsIMutI	CAGTG	2 cut(s)	133, 405
BveI	ACCTGC	1 cut(s)	771
Cac8I	GCNNGC	2 cut(s)	412, 501
CfoI	GCGC	2 cut(s)	499, 511
Cfr10I	RCCGGY	1 cut(s)	499
Cfr13I	GGNCC	3 cut(s)	228, 468, 791
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	484
CspCI	CAANNNNNGTGG	2 cut(s)	229, 264
CviAII	CATG	3 cut(s)	281, 704, 788
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	1 cut(s)	928
DpnI	GATC	1 cut(s)	614
DpnII	GATC	1 cut(s)	612
Eam1104I	CTCTTC	2 cut(s)	53, 58
EarI	CTCTTC	2 cut(s)	53, 58
Ecl136II	GAGCTC	1 cut(s)	780
Eco130I	CCWWGG	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	782
Eco47I	GGWCC	2 cut(s)	468, 791
Eco53kI	GAGCTC	1 cut(s)	780
Eco57I	CTGAAG	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	346
EcoICRI	GAGCTC	1 cut(s)	780
EcoO109I	RGGNCCY	1 cut(s)	468
EcoRII	CCWGG	5 cut(s)	210, 605, 634, 793, 936
EcoT14I	CCWWGG	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	782
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	3 cut(s)	284, 707, 791
FaiI	YATR	9 cut(s)	218, 276, 282, 672, 705, 714, 725, 789, 863
FaqI	GGGAC	1 cut(s)	741
FatI	CATG	3 cut(s)	280, 703, 787
Fnu4HI	GCNGC	1 cut(s)	799
FokI	GGATG	6 cut(s)	29, 50, 75, 93, 148, 812
FriOI	GRGCYC	1 cut(s)	782
Fsp4HI	GCNGC	1 cut(s)	799
FspBI	CTAG	2 cut(s)	755, 767
GlaI	GCGC	2 cut(s)	498, 510
GluI	GCNGC	1 cut(s)	799
GsuI	CTGGAG	1 cut(s)	194
HaeII	RGCGCY	2 cut(s)	500, 512
HaeIII	GGCC	2 cut(s)	230, 680
HapII	CCGG	7 cut(s)	221, 374, 446, 500, 588, 621, 686
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	2 cut(s)	499, 511
Hin1II	CATG	3 cut(s)	284, 707, 791
Hin6I	GCGC	2 cut(s)	497, 509
HinP1I	GCGC	2 cut(s)	497, 509
HinfI	GANTC	2 cut(s)	631, 848
HpaII	CCGG	7 cut(s)	221, 374, 446, 500, 588, 621, 686
HphI	GGTGA	7 cut(s)	287, 325, 364, 379, 388, 650, 865
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	2 cut(s)	257, 830
Hpy188III	TCNNGA	5 cut(s)	81, 446, 463, 526, 621
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	6 cut(s)	107, 329, 551, 559, 649, 691
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	1 cut(s)	730
HpyCH4V	TGCA	6 cut(s)	24, 106, 644, 667, 692, 801
HpyF10VI	GCNNNNNNNGC	3 cut(s)	312, 487, 496
HpyF3I	CTNAG	1 cut(s)	928
HpySE526I	ACGT	1 cut(s)	730
Hsp92II	CATG	3 cut(s)	284, 707, 791
HspAI	GCGC	2 cut(s)	497, 509
Kpn2I	TCCGGA	2 cut(s)	445, 620
KroI	GCCGGC	1 cut(s)	499
KroNI	GCCGGC	1 cut(s)	501
Kzo9I	GATC	1 cut(s)	612
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	1 cut(s)	785
LweI	GCATC	3 cut(s)	33, 115, 631
MaeI	CTAG	2 cut(s)	755, 767
MaeII	ACGT	1 cut(s)	730
MaeIII	GTNAC	2 cut(s)	731, 900
MalI	GATC	1 cut(s)	614
MboI	GATC	1 cut(s)	612
MboII	GAAGA	6 cut(s)	40, 45, 162, 165, 168, 171
MhlI	GDGCHC	2 cut(s)	782, 945
MluCI	AATT	4 cut(s)	366, 449, 742, 882
MmeI	TCCRAC	4 cut(s)	63, 81, 214, 822
MroI	TCCGGA	2 cut(s)	445, 620
MroNI	GCCGGC	1 cut(s)	499
MseI	TTAA	3 cut(s)	365, 696, 885
MslI	CAYNNNNRTG	4 cut(s)	392, 436, 697, 830
MspCI	CTTAAG	1 cut(s)	695
MspI	CCGG	7 cut(s)	221, 374, 446, 500, 588, 621, 686
MspR9I	CCNGG	7 cut(s)	212, 589, 607, 636, 686, 795, 938
Mva1269I	GAATGC	1 cut(s)	837
MvaI	CCWGG	5 cut(s)	212, 607, 636, 795, 938
MwoI	GCNNNNNNNGC	3 cut(s)	312, 487, 496
NaeI	GCCGGC	1 cut(s)	501
NciI	CCSGG	2 cut(s)	589, 686
NdeII	GATC	1 cut(s)	612
NgoMIV	GCCGGC	1 cut(s)	499
NlaIII	CATG	3 cut(s)	284, 707, 791
NmuCI	GTSAC	1 cut(s)	731
OliI	CACNNNNGTG	2 cut(s)	392, 697
PaeR7I	CTCGAG	1 cut(s)	346
PctI	GAATGC	1 cut(s)	837
PdiI	GCCGGC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	631, 848
PkrI	GCNGC	1 cut(s)	800
PpuMI	RGGWCCY	1 cut(s)	468
Psp124BI	GAGCTC	1 cut(s)	782
Psp5II	RGGWCCY	1 cut(s)	468
Psp6I	CCWGG	5 cut(s)	210, 605, 634, 793, 936
PspGI	CCWGG	5 cut(s)	210, 605, 634, 793, 936
PspPI	GGNCC	3 cut(s)	228, 468, 791
PspPPI	RGGWCCY	1 cut(s)	468
PspXI	VCTCGAGB	1 cut(s)	346
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
RseI	CAYNNNNRTG	4 cut(s)	392, 436, 697, 830
SacI	GAGCTC	1 cut(s)	782
SaqAI	TTAA	3 cut(s)	365, 696, 885
SatI	GCNGC	1 cut(s)	799
Sau3AI	GATC	1 cut(s)	612
Sau96I	GGNCC	3 cut(s)	228, 468, 791
ScrFI	CCNGG	7 cut(s)	212, 589, 607, 636, 686, 795, 938
SduI	GDGCHC	2 cut(s)	782, 945
SfaNI	GCATC	3 cut(s)	33, 115, 631
Sfr274I	CTCGAG	1 cut(s)	346
SinI	GGWCC	2 cut(s)	468, 791
SlaI	CTCGAG	1 cut(s)	346
SmiMI	CAYNNNNRTG	4 cut(s)	392, 436, 697, 830
SmlI	CTYRAG	5 cut(s)	79, 346, 463, 695, 896
SmoI	CTYRAG	5 cut(s)	79, 346, 463, 695, 896
Sse9I	AATT	4 cut(s)	366, 449, 742, 882
SsiI	CCGC	1 cut(s)	313
SspMI	CTAG	2 cut(s)	755, 767
SstI	GAGCTC	1 cut(s)	782
StyD4I	CCNGG	7 cut(s)	210, 587, 605, 634, 684, 793, 936
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	1 cut(s)	733
TaqI	TCGA	3 cut(s)	347, 545, 951
TasI	AATT	4 cut(s)	366, 449, 742, 882
TfiI	GAWTC	2 cut(s)	631, 848
Tru1I	TTAA	3 cut(s)	365, 696, 885
Tru9I	TTAA	3 cut(s)	365, 696, 885
TscAI	CASTG	2 cut(s)	140, 405
TseFI	GTSAC	1 cut(s)	731
TseI	GCWGC	1 cut(s)	798
Tsp45I	GTSAC	1 cut(s)	731
TspDTI	ATGAA	2 cut(s)	570, 802
TspRI	CASTG	2 cut(s)	140, 405
Vha464I	CTTAAG	1 cut(s)	695
VpaK11BI	GGWCC	2 cut(s)	468, 791
XapI	RAATTY	2 cut(s)	449, 742
XhoI	CTCGAG	1 cut(s)	346
XspI	CTAG	2 cut(s)	755, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.