Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005836

Physical Location & Seq

Genomic Coordinates Forward (+)

29828637 .. 29830457

Gene Structure 1821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1202300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTCGGTTCTCTTTCATTTTTTTCATCTCACCACCGTGAATTTGCACAAACTAAAAACCCTAAACTTCAAGCTTTTCTGCTCCCAATCCTCAACTCCAACATCGTCAGCACCACCGTCTTCCTCTCCAGTCGAAACCTTTATCAATGTATTTAGGATCATACCCGACTGGGCAAACCGCACGCAAAAGGGTGGAATGAGACAACGCATAACACTTTATGACCATGAGAAATGGATGCAGCACAGAAGCTCATACCACCACCTCCACCACTTACTTTCCAGCCTTTCGTCCATAGTCATCCTGTCTTTGATACCCCCGGTGATTGTTTTTACTTTCATGGCTGTAGTGATTGCTAGCTATAATACAGCACTCACAGCGTTGACATTGGCGCTGTTGCTAGTGTTCAGGACAGAGGCTTCGTATTCAAGATTTGAAGAAGGAAAGAAGGCTTGGGCTGAGGTGATTGCAGGGGCTAATGATTTTACGAGACTGGTCATTTCTAGTGCACTTTTGCAGTATATTATGGCCTTCCCTGTTGCGCTGAAGTGTCATGTCATTTATGGCTCAGACATTGGACGAGACCTCGAAGATTTGCTTGAAATAGATGATCTGCTAGTTGTTTTGAACTCAAAACATCGACCCAACTGCATTATTCAGTTCATCTCCCGGAGCCTCCAATTGCTACAGTTGGAGGAATCGAAGAGAAATATGTTGGTTGTTGAACACAGATTTAGAAGGAAAGGGAACTTTTCCACCTGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005247 GO:0005253 GO:0005254 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006996 GO:0008150 GO:0008152 GO:0008308 GO:0008509 GO:0009507 GO:0009532 GO:0009533 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010109 GO:0015075 GO:0015103 GO:0015108 GO:0015267 GO:0015318 GO:0015698 GO:0015979 GO:0016020 GO:0016043 GO:0019222 GO:0019684 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031323 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042548 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0061024 GO:0065007 GO:0071840 GO:0098656 GO:0098660 GO:0098661 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bestrophin

Protein Analysis

255

Amino Acids

29.05

Weight (kDa)

9.48

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bestrophin_2	PF25539	78 - 238	2.1e-28	Bacterial/Fungal Bestrophin protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45870 AT2G45870 AT2G45870 AT3G61320 AT3G61320 AT3G61320 AT3G61320
fragaria_vesca	FvH4_7g14170
malus_domestica	MD01G1057600.v1.1 MD01G1202300.v1.1 MD07G1139000.v1.1
prunus_persica	Prupe.2G168100_v2.0.a1 Prupe.2G168100_v2.0.a1 Prupe.2G168100_v2.0.a1
pyrus_communis	pycom01g08760 pycom07g13600
rosa_chinensis	RchiOBHm_Chr1g0355071
rosa_laevigata	RLG00000028179
rosa_multiflora	Rmu_sc0003115.1_g000030
rosa_roxburghii	Rroxscaffold_4G00300690
rosa_rugosa	Rorug01G0244900
rosa_samantha	Rh1AG257200 Rh1BG226500 Rh1CG240800 Rh1DG254100 Rh4DG156900
rosa_wichuraiana	Rw0G011210 Rw1G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	178
AclWI	GGATC	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	563
AgsI	TTSAA	6 cut(s)	70, 426, 434, 599, 625, 722
AjuI	GAANNNNNNNTTGG	2 cut(s)	433, 465
AleI	CACNNNNGTG	1 cut(s)	35
AluBI	AGCT	3 cut(s)	73, 249, 357
AluI	AGCT	3 cut(s)	73, 249, 357
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	3 cut(s)	193, 481, 573
Alw44I	GTGCAC	1 cut(s)	504
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	1 cut(s)	525
ApaLI	GTGCAC	1 cut(s)	504
ApeKI	GCWGC	1 cut(s)	238
ApoI	RAATTY	1 cut(s)	40
ArsI	GACNNNNNNTTYG	2 cut(s)	400, 432
AspLEI	GCGC	2 cut(s)	391, 541
AsuC2I	CCSGG	2 cut(s)	317, 667
AsuHPI	GGTGA	3 cut(s)	22, 331, 472
AsuNHI	GCTAGC	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	508
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	508
BbvCI	CCTCAGC	1 cut(s)	456
BbvI	GCAGC	1 cut(s)	250
BcgI	CGANNNNNNTGC	2 cut(s)	627, 661
BcnI	CCSGG	2 cut(s)	317, 667
BcoDI	GTCTC	3 cut(s)	193, 481, 573
BfaI	CTAG	4 cut(s)	354, 398, 501, 614
BfmI	CTRYAG	2 cut(s)	342, 683
BfoI	RGCGCY	1 cut(s)	392
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	2 cut(s)	317, 667
BmiI	GGNNCC	1 cut(s)	671
BmrFI	CCNGG	2 cut(s)	317, 667
BmrI	ACTGGG	1 cut(s)	178
BmsI	GCATC	1 cut(s)	225
BmtI	GCTAGC	1 cut(s)	357
BmuI	ACTGGG	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	111
Bpu10I	CCTNAGC	1 cut(s)	456
BpuMI	CCSGG	2 cut(s)	317, 667
BsaI	GGTCTC	1 cut(s)	573
BsaJI	CCNNGG	1 cut(s)	315
Bse1I	ACTGG	3 cut(s)	128, 173, 495
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	2 cut(s)	240, 297
BseMII	CTCAG	2 cut(s)	447, 579
BseNI	ACTGG	3 cut(s)	128, 173, 495
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	1 cut(s)	250
BshFI	GGCC	1 cut(s)	527
BsiHKAI	GWGCWC	1 cut(s)	508
BsiSI	CCGG	2 cut(s)	317, 667
BsmAI	GTCTC	3 cut(s)	193, 481, 573
BsnI	GGCC	1 cut(s)	527
Bso31I	GGTCTC	1 cut(s)	573
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp143I	GATC	2 cut(s)	156, 607
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	1 cut(s)	527
BspCNI	CTCAG	2 cut(s)	448, 578
BspLI	GGNNCC	1 cut(s)	671
BspOI	GCTAGC	1 cut(s)	357
BspPI	GGATC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	573
BsrI	ACTGG	3 cut(s)	128, 173, 495
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	2 cut(s)	156, 607
Bst4CI	ACNGT	3 cut(s)	37, 117, 687
Bst6I	CTCTTC	1 cut(s)	695
BstC8I	GCNNGC	2 cut(s)	182, 355
BstDEI	CTNAG	2 cut(s)	456, 565
BstF5I	GGATG	2 cut(s)	240, 297
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	2 cut(s)	391, 541
BstKTI	GATC	2 cut(s)	159, 610
BstMAI	GTCTC	3 cut(s)	193, 481, 573
BstMBI	GATC	2 cut(s)	156, 607
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstSCI	CCNGG	2 cut(s)	315, 665
BstSFI	CTRYAG	2 cut(s)	342, 683
BstSLI	GKGCMC	1 cut(s)	508
BstV1I	GCAGC	1 cut(s)	250
BstV2I	GAAGAC	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	527
BtsCI	GGATG	2 cut(s)	240, 297
Cac8I	GCNNGC	2 cut(s)	182, 355
CfoI	GCGC	2 cut(s)	391, 541
CviAII	CATG	3 cut(s)	224, 337, 551
DdeI	CTNAG	2 cut(s)	456, 565
DpnI	GATC	2 cut(s)	158, 609
DpnII	GATC	2 cut(s)	156, 607
Eam1104I	CTCTTC	1 cut(s)	695
EarI	CTCTTC	1 cut(s)	695
Eco31I	GGTCTC	1 cut(s)	573
Eco57I	CTGAAG	1 cut(s)	563
FaeI	CATG	3 cut(s)	227, 340, 554
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FatI	CATG	3 cut(s)	223, 336, 550
Fnu4HI	GCNGC	1 cut(s)	239
FokI	GGATG	2 cut(s)	247, 284
Fsp4HI	GCNGC	1 cut(s)	239
FspBI	CTAG	4 cut(s)	354, 398, 501, 614
GlaI	GCGC	2 cut(s)	390, 540
GluI	GCNGC	1 cut(s)	239
GsuI	CTGGAG	1 cut(s)	111
HaeII	RGCGCY	1 cut(s)	392
HaeIII	GGCC	1 cut(s)	527
HapII	CCGG	2 cut(s)	317, 667
HhaI	GCGC	2 cut(s)	391, 541
Hin1II	CATG	3 cut(s)	227, 340, 554
Hin6I	GCGC	2 cut(s)	389, 539
HinP1I	GCGC	2 cut(s)	389, 539
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	1 cut(s)	695
HpaII	CCGG	2 cut(s)	317, 667
HphI	GGTGA	3 cut(s)	22, 331, 472
Hpy166II	GTNNAC	2 cut(s)	381, 506
Hpy188I	TCNGA	1 cut(s)	568
Hpy188III	TCNNGA	2 cut(s)	406, 426
Hpy8I	GTNNAC	2 cut(s)	381, 506
HpyAV	CCTTC	4 cut(s)	431, 439, 538, 729
HpyCH4III	ACNGT	3 cut(s)	37, 117, 687
HpyCH4V	TGCA	6 cut(s)	46, 238, 467, 506, 514, 648
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	2 cut(s)	456, 565
Hsp92II	CATG	3 cut(s)	227, 340, 554
HspAI	GCGC	2 cut(s)	389, 539
Kzo9I	GATC	2 cut(s)	156, 607
LmnI	GCTCC	2 cut(s)	86, 669
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	4 cut(s)	354, 398, 501, 614
MalI	GATC	2 cut(s)	158, 609
MboI	GATC	2 cut(s)	156, 607
MboII	GAAGA	4 cut(s)	111, 446, 599, 712
MfeI	CAATTG	1 cut(s)	677
MhlI	GDGCHC	1 cut(s)	508
MluCI	AATT	2 cut(s)	40, 677
MmeI	TCCRAC	2 cut(s)	122, 669
MnlI	CCTC	8 cut(s)	100, 133, 272, 406, 451, 593, 683, 685
MslI	CAYNNNNRTG	1 cut(s)	35
MspI	CCGG	2 cut(s)	317, 667
MspR9I	CCNGG	2 cut(s)	317, 667
MunI	CAATTG	1 cut(s)	677
MwoI	GCNNNNNNNGC	1 cut(s)	374
NciI	CCSGG	2 cut(s)	317, 667
NdeII	GATC	2 cut(s)	156, 607
NheI	GCTAGC	1 cut(s)	353
NlaIII	CATG	3 cut(s)	227, 340, 554
NlaIV	GGNNCC	1 cut(s)	671
OliI	CACNNNNGTG	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	695
PfoI	TCCNGGA	1 cut(s)	665
PkrI	GCNGC	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	671
RseI	CAYNNNNRTG	1 cut(s)	35
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	2 cut(s)	156, 607
ScrFI	CCNGG	2 cut(s)	317, 667
SduI	GDGCHC	1 cut(s)	508
SetI	ASST	8 cut(s)	75, 140, 251, 264, 359, 462, 585, 758
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	2 cut(s)	342, 683
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	2 cut(s)	40, 677
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	4 cut(s)	354, 398, 501, 614
StyD4I	CCNGG	2 cut(s)	315, 665
TaaI	ACNGT	3 cut(s)	37, 117, 687
TaqI	TCGA	4 cut(s)	132, 585, 637, 698
TasI	AATT	2 cut(s)	40, 677
TfiI	GAWTC	1 cut(s)	695
TseI	GCWGC	1 cut(s)	238
TspDTI	ATGAA	4 cut(s)	5, 14, 325, 649
VneI	GTGCAC	1 cut(s)	504
XapI	RAATTY	1 cut(s)	40
XspI	CTAG	4 cut(s)	354, 398, 501, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.