Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003115.1

Orthogroup ID

OG0005836

Physical Location & Seq

Genomic Coordinates Forward (+)

130892 .. 133283

Gene Structure 2392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003115.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

atgctgacgcaacccacaaactgcatcaaacccacctccaacatcctcttctcttccaactctatccccaagactttctcaggattacatccacgccttcccctgcatcccagaaccctctcattcaaactccactgctcacagtatccaaacccaactccatcctcatcatcttcttctccattccaacccctaatctcgatcctccaggtcataccggactgggccgacgaaatcaaagagcgtggctttagacaggacagaacactctatgaccatgagaaatgggttcaccacagaagctcctaccgccacctccgccacttcctcaccagcctttcctcgagggtcattttgtctttaattcctccggtgattgctttcaccttggtggcggtggtgattgccagctacaatacagcagttgcattggagtggcttccggaatttttccccatcttgaggtcctcaactctgccgtaccagctcacagcgccggcattggcgctgttgttggtgttcaggacagaggcttcttattcgaggtttgaagaagggaggaaggcttggactaaagtgattgccggggctaatgattttgccaggcagatcatttccggagttgagaatcctggtgatgcagagctaaagaaggcacttttgcagtatgttgtggccttcccggttgcacttaagtgtcatgtcatttatggctcaaatatgggacgtgacctccaaaatttgcttgaactagatgacctgctagttgttttaagctcaaaacatggacctggctgcattattgagttcatctcccagaacatccgaatgctaaagttggaggaatcaaggagaaatatgttggaatcaaatatgtcttgtttccatgaaggaattggcatatgtgaaaatctcattggtactcccattcctctctcttatacacgcttgacttcaaggtttctagtcctctggcatctcactctccctatcatactttgggatgactgccactggattgtggtacctgctacctttattagcgctgcttcattgttctgcattgaggaagtcggtgttctcattgaagagccatttccaatgcttgcccttgatgacctttgcaaatctgttcaagagaacgtacaggaggctcttgcaagagaaaaactaattcaagcgcggcttactgcaaaaggaaggacccaaaccaagaagcagcactcgacaaatggtcagccgaaatcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005247 GO:0005253 GO:0005254 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006996 GO:0008150 GO:0008152 GO:0008308 GO:0008509 GO:0009507 GO:0009532 GO:0009533 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010109 GO:0015075 GO:0015103 GO:0015108 GO:0015267 GO:0015318 GO:0015698 GO:0015979 GO:0016020 GO:0016043 GO:0019222 GO:0019684 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031323 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042548 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0061024 GO:0065007 GO:0071840 GO:0098656 GO:0098660 GO:0098661 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bestrophin

Protein Analysis

416

Amino Acids

46.88

Weight (kDa)

8.51

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45870 AT2G45870 AT2G45870 AT3G61320 AT3G61320 AT3G61320 AT3G61320
fragaria_vesca	FvH4_7g14170
malus_domestica	MD01G1057600.v1.1 MD01G1202300.v1.1 MD07G1139000.v1.1
prunus_persica	Prupe.2G168100_v2.0.a1 Prupe.2G168100_v2.0.a1 Prupe.2G168100_v2.0.a1
pyrus_communis	pycom01g08760 pycom07g13600
rosa_chinensis	RchiOBHm_Chr1g0355071
rosa_laevigata	RLG00000028179
rosa_multiflora	Rmu_sc0003115.1_g000030
rosa_roxburghii	Rroxscaffold_4G00300690
rosa_rugosa	Rorug01G0244900
rosa_samantha	Rh1AG257200 Rh1BG226500 Rh1CG240800 Rh1DG254100 Rh4DG156900
rosa_wichuraiana	Rw0G011210 Rw1G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	343
Acc36I	ACCTGC	2 cut(s)	768, 1036
Acc65I	GGTACC	1 cut(s)	1024
AccB1I	GGYRCC	1 cut(s)	1024
AccII	CGCG	1 cut(s)	1183
AccIII	TCCGGA	2 cut(s)	442, 617
AciI	CCGC	4 cut(s)	310, 319, 395, 1183
AclWI	GGATC	1 cut(s)	196
AcsI	RAATTY	2 cut(s)	446, 739
AfaI	GTAC	4 cut(s)	482, 922, 1026, 1146
AfeI	AGCGCT	1 cut(s)	1045
AfiI	CCNNNNNNNGG	1 cut(s)	462
AflII	CTTAAG	1 cut(s)	692
AgsI	TTSAA	7 cut(s)	127, 551, 749, 957, 1088, 1136, 1178
AhdI	GACNNNNNGTC	1 cut(s)	1233
AjiI	CACGTC	1 cut(s)	728
AjnI	CCWGG	4 cut(s)	207, 602, 631, 790
AjuI	GAANNNNNNNTTGG	4 cut(s)	32, 64, 900, 932
AleI	CACNNNNGTG	2 cut(s)	389, 694
AluBI	AGCT	5 cut(s)	303, 411, 487, 646, 777
AluI	AGCT	5 cut(s)	303, 411, 487, 646, 777
AlwI	GGATC	1 cut(s)	196
Ama87I	CYCGRG	1 cut(s)	343
Aor13HI	TCCGGA	2 cut(s)	442, 617
Aor51HI	AGCGCT	1 cut(s)	1045
AoxI	GGCC	2 cut(s)	225, 675
ApeKI	GCWGC	3 cut(s)	795, 1046, 1219
ApoI	RAATTY	2 cut(s)	446, 739
Asp718I	GGTACC	1 cut(s)	1024
AspLEI	GCGC	4 cut(s)	496, 508, 1046, 1183
AspS9I	GGNCC	4 cut(s)	225, 465, 788, 1203
AsuC2I	CCSGG	2 cut(s)	586, 683
AsuHPI	GGTGA	6 cut(s)	284, 322, 376, 385, 412, 647
AvaI	CYCGRG	1 cut(s)	343
AvaII	GGWCC	3 cut(s)	465, 788, 1203
BanI	GGYRCC	1 cut(s)	1024
BbvI	GCAGC	3 cut(s)	782, 1033, 1231
BccI	CCATC	2 cut(s)	169, 464
BceAI	ACGGC	1 cut(s)	463
BciT130I	CCWGG	4 cut(s)	209, 604, 633, 792
BciVI	GTATCC	1 cut(s)	156
BcnI	CCSGG	2 cut(s)	586, 683
BfaI	CTAG	4 cut(s)	752, 764, 965, 1249
BfoI	RGCGCY	3 cut(s)	497, 509, 1047
BfrI	CTTAAG	1 cut(s)	692
BfuAI	ACCTGC	2 cut(s)	768, 1036
BfuI	GTATCC	1 cut(s)	156
BisI	GCNGC	4 cut(s)	796, 1047, 1184, 1220
BlsI	GCNGC	4 cut(s)	797, 1048, 1185, 1221
Bme1390I	CCNGG	6 cut(s)	209, 586, 604, 633, 683, 792
Bme18I	GGWCC	3 cut(s)	465, 788, 1203
BmeRI	GACNNNNNGTC	1 cut(s)	1233
BmeT110I	CYCGRG	1 cut(s)	343
BmgBI	CACGTC	1 cut(s)	728
BmgT120I	GGNCC	4 cut(s)	225, 465, 788, 1203
BmiI	GGNNCC	2 cut(s)	1026, 1205
BmrFI	CCNGG	6 cut(s)	209, 586, 604, 633, 683, 792
BmrI	ACTGGG	1 cut(s)	232
BmsI	GCATC	4 cut(s)	33, 115, 628, 985
BmuI	ACTGGG	1 cut(s)	232
BplI	GAGNNNNNCTC	2 cut(s)	797, 829
BpmI	CTGGAG	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	481
BpuMI	CCSGG	2 cut(s)	586, 683
BsaJI	CCNNGG	2 cut(s)	387, 585
BsaWI	WCCGGW	4 cut(s)	217, 370, 442, 617
BsaXI	ACNNNNNCTCC	4 cut(s)	287, 317, 717, 747
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse118I	RCCGGY	1 cut(s)	496
Bse1I	ACTGG	2 cut(s)	227, 1019
BseAI	TCCGGA	2 cut(s)	442, 617
BseBI	CCWGG	4 cut(s)	209, 604, 633, 792
BseDI	CCNNGG	2 cut(s)	387, 585
BseGI	GGATG	6 cut(s)	42, 88, 106, 161, 822, 1009
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	2 cut(s)	227, 1019
BseXI	GCAGC	3 cut(s)	782, 1033, 1231
Bsh1236I	CGCG	1 cut(s)	1183
BshFI	GGCC	2 cut(s)	227, 677
BshNI	GGYRCC	1 cut(s)	1024
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	7 cut(s)	218, 371, 443, 497, 585, 618, 683
BslFI	GGGAC	1 cut(s)	738
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmFI	GGGAC	1 cut(s)	738
BsmI	GAATGC	1 cut(s)	834
BsnI	GGCC	2 cut(s)	227, 677
BsoBI	CYCGRG	1 cut(s)	343
Bsp13I	TCCGGA	2 cut(s)	442, 617
Bsp143I	GATC	2 cut(s)	201, 609
BspACI	CCGC	4 cut(s)	310, 319, 395, 1183
BspANI	GGCC	2 cut(s)	227, 677
BspCNI	CTCAG	1 cut(s)	92
BspEI	TCCGGA	2 cut(s)	442, 617
BspFNI	CGCG	1 cut(s)	1183
BspLI	GGNNCC	2 cut(s)	1026, 1205
BspMI	ACCTGC	2 cut(s)	768, 1036
BspPI	GGATC	1 cut(s)	196
BspQI	GCTCTTC	1 cut(s)	1083
BspT107I	GGYRCC	1 cut(s)	1024
BspTI	CTTAAG	1 cut(s)	692
BsrFI	RCCGGY	1 cut(s)	496
BsrI	ACTGG	2 cut(s)	227, 1019
BssAI	RCCGGY	1 cut(s)	496
BssECI	CCNNGG	2 cut(s)	387, 585
BssMI	GATC	2 cut(s)	201, 609
BssT1I	CCWWGG	1 cut(s)	387
Bst2UI	CCWGG	4 cut(s)	209, 604, 633, 792
Bst4CI	ACNGT	1 cut(s)	144
Bst6I	CTCTTC	3 cut(s)	53, 58, 1083
BstAFI	CTTAAG	1 cut(s)	692
BstC8I	GCNNGC	3 cut(s)	409, 498, 1107
BstDEI	CTNAG	1 cut(s)	79
BstF5I	GGATG	6 cut(s)	42, 88, 106, 161, 822, 1009
BstFNI	CGCG	1 cut(s)	1183
BstH2I	RGCGCY	3 cut(s)	497, 509, 1047
BstHHI	GCGC	4 cut(s)	496, 508, 1046, 1183
BstKTI	GATC	2 cut(s)	204, 612
BstMBI	GATC	2 cut(s)	201, 609
BstMWI	GCNNNNNNNGC	4 cut(s)	309, 318, 484, 493
BstNI	CCWGG	4 cut(s)	209, 604, 633, 792
BstSCI	CCNGG	6 cut(s)	207, 584, 602, 631, 681, 790
BstUI	CGCG	1 cut(s)	1183
BstV1I	GCAGC	3 cut(s)	782, 1033, 1231
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	227, 677
BtrI	CACGTC	1 cut(s)	728
BtsCI	GGATG	6 cut(s)	42, 88, 106, 161, 822, 1009
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	2 cut(s)	133, 1012
BveI	ACCTGC	2 cut(s)	768, 1036
Cac8I	GCNNGC	3 cut(s)	409, 498, 1107
CfoI	GCGC	4 cut(s)	496, 508, 1046, 1183
Cfr10I	RCCGGY	1 cut(s)	496
Cfr13I	GGNCC	4 cut(s)	225, 465, 788, 1203
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	4 cut(s)	481, 921, 1025, 1145
CspCI	CAANNNNNGTGG	2 cut(s)	226, 261
CviAII	CATG	4 cut(s)	278, 701, 785, 887
CviQI	GTAC	4 cut(s)	481, 921, 1025, 1145
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	2 cut(s)	203, 611
DpnII	GATC	2 cut(s)	201, 609
DriI	GACNNNNNGTC	1 cut(s)	1233
Eam1104I	CTCTTC	3 cut(s)	53, 58, 1083
Eam1105I	GACNNNNNGTC	1 cut(s)	1233
EarI	CTCTTC	3 cut(s)	53, 58, 1083
EciI	GGCGGA	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	387
Eco47I	GGWCC	3 cut(s)	465, 788, 1203
Eco47III	AGCGCT	1 cut(s)	1045
Eco88I	CYCGRG	1 cut(s)	343
EcoO109I	RGGNCCY	2 cut(s)	465, 1203
EcoRII	CCWGG	4 cut(s)	207, 602, 631, 790
EcoT14I	CCWWGG	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	4 cut(s)	281, 704, 788, 890
FalI	AAGNNNNNCTT	2 cut(s)	1170, 1202
FaqI	GGGAC	1 cut(s)	738
FatI	CATG	4 cut(s)	277, 700, 784, 886
FauNDI	CATATG	1 cut(s)	902
Fnu4HI	GCNGC	4 cut(s)	796, 1047, 1184, 1220
FokI	GGATG	6 cut(s)	29, 75, 93, 148, 809, 1016
Fsp4HI	GCNGC	4 cut(s)	796, 1047, 1184, 1220
FspBI	CTAG	4 cut(s)	752, 764, 965, 1249
GlaI	GCGC	4 cut(s)	495, 507, 1045, 1182
GluI	GCNGC	4 cut(s)	796, 1047, 1184, 1220
GsuI	CTGGAG	1 cut(s)	191
HaeII	RGCGCY	3 cut(s)	497, 509, 1047
HaeIII	GGCC	2 cut(s)	227, 677
HapII	CCGG	7 cut(s)	218, 371, 443, 497, 585, 618, 683
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	4 cut(s)	496, 508, 1046, 1183
Hin1II	CATG	4 cut(s)	281, 704, 788, 890
Hin6I	GCGC	4 cut(s)	494, 506, 1044, 1181
HinP1I	GCGC	4 cut(s)	494, 506, 1044, 1181
HinfI	GANTC	3 cut(s)	628, 845, 866
HpaII	CCGG	7 cut(s)	218, 371, 443, 497, 585, 618, 683
HphI	GGTGA	6 cut(s)	284, 322, 376, 385, 412, 647
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	827
Hpy188III	TCNNGA	7 cut(s)	81, 199, 443, 460, 523, 618, 1136
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	7 cut(s)	107, 548, 556, 646, 688, 884, 1194
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	2 cut(s)	727, 1143
HpyF10VI	GCNNNNNNNGC	4 cut(s)	309, 318, 484, 493
HpyF3I	CTNAG	1 cut(s)	79
HpySE526I	ACGT	2 cut(s)	727, 1143
Hsp92II	CATG	4 cut(s)	281, 704, 788, 890
HspAI	GCGC	4 cut(s)	494, 506, 1044, 1181
Kpn2I	TCCGGA	2 cut(s)	442, 617
KpnI	GGTACC	1 cut(s)	1028
KroI	GCCGGC	1 cut(s)	496
KroNI	GCCGGC	1 cut(s)	498
Kzo9I	GATC	2 cut(s)	201, 609
LguI	GCTCTTC	1 cut(s)	1083
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	3 cut(s)	782, 1033, 1231
LweI	GCATC	4 cut(s)	33, 115, 628, 985
MaeI	CTAG	4 cut(s)	752, 764, 965, 1249
MaeII	ACGT	2 cut(s)	727, 1143
MaeIII	GTNAC	1 cut(s)	728
MalI	GATC	2 cut(s)	203, 611
MboI	GATC	2 cut(s)	201, 609
MboII	GAAGA	6 cut(s)	40, 45, 165, 168, 563, 1100
MluCI	AATT	5 cut(s)	363, 446, 739, 894, 1173
MmeI	TCCRAC	5 cut(s)	63, 81, 211, 819, 843
MroI	TCCGGA	2 cut(s)	442, 617
MroNI	GCCGGC	1 cut(s)	496
MseI	TTAA	3 cut(s)	362, 693, 773
MslI	CAYNNNNRTG	4 cut(s)	389, 433, 694, 827
MspCI	CTTAAG	1 cut(s)	692
MspI	CCGG	7 cut(s)	218, 371, 443, 497, 585, 618, 683
MspR9I	CCNGG	6 cut(s)	209, 586, 604, 633, 683, 792
Mva1269I	GAATGC	1 cut(s)	834
MvaI	CCWGG	4 cut(s)	209, 604, 633, 792
MvnI	CGCG	1 cut(s)	1183
MwoI	GCNNNNNNNGC	4 cut(s)	309, 318, 484, 493
NaeI	GCCGGC	1 cut(s)	498
NciI	CCSGG	2 cut(s)	586, 683
NdeI	CATATG	1 cut(s)	902
NdeII	GATC	2 cut(s)	201, 609
NgoMIV	GCCGGC	1 cut(s)	496
NlaIII	CATG	4 cut(s)	281, 704, 788, 890
NlaIV	GGNNCC	2 cut(s)	1026, 1205
NmuCI	GTSAC	1 cut(s)	728
OliI	CACNNNNGTG	2 cut(s)	389, 694
PaeR7I	CTCGAG	1 cut(s)	343
PciSI	GCTCTTC	1 cut(s)	1083
PctI	GAATGC	1 cut(s)	834
PdiI	GCCGGC	1 cut(s)	498
PfeI	GAWTC	3 cut(s)	628, 845, 866
PkrI	GCNGC	4 cut(s)	797, 1048, 1185, 1221
PpuMI	RGGWCCY	2 cut(s)	465, 1203
Psp5II	RGGWCCY	2 cut(s)	465, 1203
Psp6I	CCWGG	4 cut(s)	207, 602, 631, 790
PspGI	CCWGG	4 cut(s)	207, 602, 631, 790
PspN4I	GGNNCC	2 cut(s)	1026, 1205
PspPI	GGNCC	4 cut(s)	225, 465, 788, 1203
PspPPI	RGGWCCY	2 cut(s)	465, 1203
PspXI	VCTCGAGB	1 cut(s)	343
RsaI	GTAC	4 cut(s)	482, 922, 1026, 1146
RsaNI	GTAC	4 cut(s)	481, 921, 1025, 1145
RseI	CAYNNNNRTG	4 cut(s)	389, 433, 694, 827
SapI	GCTCTTC	1 cut(s)	1083
SaqAI	TTAA	3 cut(s)	362, 693, 773
SatI	GCNGC	4 cut(s)	796, 1047, 1184, 1220
Sau3AI	GATC	2 cut(s)	201, 609
Sau96I	GGNCC	4 cut(s)	225, 465, 788, 1203
ScrFI	CCNGG	6 cut(s)	209, 586, 604, 633, 683, 792
SfaNI	GCATC	4 cut(s)	33, 115, 628, 985
Sfr274I	CTCGAG	1 cut(s)	343
SinI	GGWCC	3 cut(s)	465, 788, 1203
SlaI	CTCGAG	1 cut(s)	343
SmiMI	CAYNNNNRTG	4 cut(s)	389, 433, 694, 827
SmlI	CTYRAG	3 cut(s)	343, 460, 692
SmoI	CTYRAG	3 cut(s)	343, 460, 692
Sse9I	AATT	5 cut(s)	363, 446, 739, 894, 1173
SsiI	CCGC	4 cut(s)	310, 319, 395, 1183
SspMI	CTAG	4 cut(s)	752, 764, 965, 1249
StyD4I	CCNGG	6 cut(s)	207, 584, 602, 631, 681, 790
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	2 cut(s)	730, 1146
TaqI	TCGA	4 cut(s)	200, 344, 542, 1226
TasI	AATT	5 cut(s)	363, 446, 739, 894, 1173
TauI	GCSGC	1 cut(s)	1186
TfiI	GAWTC	3 cut(s)	628, 845, 866
Tru1I	TTAA	3 cut(s)	362, 693, 773
Tru9I	TTAA	3 cut(s)	362, 693, 773
TscAI	CASTG	2 cut(s)	140, 1019
TseFI	GTSAC	1 cut(s)	728
TseI	GCWGC	3 cut(s)	795, 1046, 1219
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	3 cut(s)	799, 903, 1041
TspRI	CASTG	2 cut(s)	140, 1019
Vha464I	CTTAAG	1 cut(s)	692
VpaK11BI	GGWCC	3 cut(s)	465, 788, 1203
XapI	RAATTY	2 cut(s)	446, 739
XcmI	CCANNNNNNNNNTGG	1 cut(s)	893
XhoI	CTCGAG	1 cut(s)	343
XspI	CTAG	4 cut(s)	752, 764, 965, 1249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.