Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005836

Physical Location & Seq

Genomic Coordinates Forward (+)

21621865 .. 21624662

Gene Structure 2798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G168100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGCTGATACAACCCGTAAACCCCATCAAACCCACCACCAACATCTCTCTCTCATCCAAATACTCTACCCCAAACACTTTTCCAACCCTTCCCTCCAAACCTAAAACCCTCAAGTTCAAAGTCCTCTGCTGCTCACCCTCCCCAACCCCAAACCCACCATCATCTTCATCTTCATCTTCCTCTCCAATACAAGCCGTAATCTCAATACTCCAGATCATACCCGACTGGGCAGACAGCATAAAAGAGCGTGGCTTCAGACAGAACAGAACCCTTTACGACCATGAGAAATGGGTTCATCACAGAAGCTCTTACCGCCATCTCCGGCACTTTCTTACGAGCCTTTCGTCAAGGGTAATCTTGTCTTTGATACCACCAGTCATTGCTTTTACTTTAGTGGCAGTGGTGATTGCGAGCTACAATTCAGCGGTTTCATTGAATTGGCTTCCGGGGTTTTTTCCGGTGTTGAGGTCCTCAACTTTGCCGTACCAGCTGACAGCACCGGCATTGGCGCTGTTGTTGGTGTTCAGGACAGAGGCTTCTTATTCAAGGTTTGAGGAAGGGAGGAAGGCTTGGACTAAGGTGATTGCAGGGGCTAATGATTTCGCAAGGCAGATCATTTCCGCGGTTGAAAATTCAGGTGATGCACAGCTGAAGAAGGCACTTTTGCAGTATATTGTGGCCTTTCCTGTTGCACTGAAGTGTCATGTCGTTTATGGCTCAGATATCAGACAGGACCTCCAAAATTTGCTTGAATTAGATGATCTGTTAGTTGTTTTGAATTCAAAACATCGACCCAGCTGCATTATTGAGTTCATCTCCCAGAGCCTTCGATTGCTAAATTTGGAGGACTCAAGGAGAATTATGTTGCAATCAAAAATCTCTTGTTTCCATGAAGGGATTGGCGTATGTGAACAACTAATTGGTACTCCCATCCCCCTCTCATATACGCGCTTGACTTCAAGGTTTCTAGTCCTCTGGCATCTCACTCTCCCTATCATACTTTGGGATGACTGCCACTGGATTGTGGTTCCTGCTACTTTTATTAGTGCTGCTTCTCTGTTCTGCATTGAAGAAGTGGGTGTTCTTATTGAGGAGCCATTTCCAATGCTTCCCCTTGATGACCTTTGTAATTCAGTTCAAACCAACGTAAGTGAGGCTCTTGCTAGAGAAAAACTAATTCAAGCGCGGCTTGCTGCAAAAGGAAAGATCCAGCCTGAGCAGCAGTTTCAAAATGGTCAGCCTAAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005247 GO:0005253 GO:0005254 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006996 GO:0008150 GO:0008152 GO:0008308 GO:0008509 GO:0009507 GO:0009532 GO:0009533 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0010109 GO:0015075 GO:0015103 GO:0015108 GO:0015267 GO:0015318 GO:0015698 GO:0015979 GO:0016020 GO:0016043 GO:0019222 GO:0019684 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0031323 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0042548 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055085 GO:0061024 GO:0065007 GO:0071840 GO:0098656 GO:0098660 GO:0098661 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bestrophin

Protein Analysis

417

Amino Acids

46.52

Weight (kDa)

9.0

Isoelectric Point (pI)

55.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45870 AT2G45870 AT2G45870 AT3G61320 AT3G61320 AT3G61320 AT3G61320
fragaria_vesca	FvH4_7g14170
malus_domestica	MD01G1057600.v1.1 MD01G1202300.v1.1 MD07G1139000.v1.1
prunus_persica	Prupe.2G168100_v2.0.a1 Prupe.2G168100_v2.0.a1 Prupe.2G168100_v2.0.a1
pyrus_communis	pycom01g08760 pycom07g13600
rosa_chinensis	RchiOBHm_Chr1g0355071
rosa_laevigata	RLG00000028179
rosa_multiflora	Rmu_sc0003115.1_g000030
rosa_roxburghii	Rroxscaffold_4G00300690
rosa_rugosa	Rorug01G0244900
rosa_samantha	Rh1AG257200 Rh1BG226500 Rh1CG240800 Rh1DG254100 Rh4DG156900
rosa_wichuraiana	Rw0G011210 Rw1G022680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	623, 949, 1186
AciI	CCGC	5 cut(s)	313, 425, 621, 623, 1186
AclWI	GGATC	1 cut(s)	1201
AcsI	RAATTY	4 cut(s)	631, 742, 778, 838
AcuI	CTGAAG	3 cut(s)	238, 671, 716
AfaI	GTAC	2 cut(s)	485, 925
AjuI	GAANNNNNNNTTGG	2 cut(s)	903, 935
AleI	CACNNNNGTG	1 cut(s)	697
AluBI	AGCT	5 cut(s)	306, 414, 490, 649, 798
AluI	AGCT	5 cut(s)	306, 414, 490, 649, 798
AlwI	GGATC	1 cut(s)	1201
AoxI	GGCC	1 cut(s)	678
ApeKI	GCWGC	5 cut(s)	129, 798, 1049, 1193, 1219
ApoI	RAATTY	4 cut(s)	631, 742, 778, 838
AspLEI	GCGC	3 cut(s)	511, 951, 1186
AspS9I	GGNCC	2 cut(s)	468, 733
AsuC2I	CCSGG	1 cut(s)	447
AsuHPI	GGTGA	4 cut(s)	126, 415, 592, 650
AvaII	GGWCC	2 cut(s)	468, 733
BbvI	GCAGC	5 cut(s)	116, 785, 1036, 1180, 1231
BccI	CCATC	4 cut(s)	32, 166, 324, 938
BceAI	ACGGC	2 cut(s)	179, 466
BcgI	CGANNNNNNTGC	2 cut(s)	780, 814
BcnI	CCSGG	1 cut(s)	447
BfaI	CTAG	2 cut(s)	968, 1164
BfoI	RGCGCY	1 cut(s)	512
BisI	GCNGC	6 cut(s)	130, 799, 1050, 1187, 1194, 1220
BlsI	GCNGC	6 cut(s)	131, 800, 1051, 1188, 1195, 1221
Bme1390I	CCNGG	1 cut(s)	447
Bme18I	GGWCC	2 cut(s)	468, 733
BmgT120I	GGNCC	2 cut(s)	468, 733
BmiI	GGNNCC	2 cut(s)	1029, 1095
BmrFI	CCNGG	1 cut(s)	447
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	2 cut(s)	631, 988
BmuI	ACTGGG	1 cut(s)	235
BplI	GAGNNNNNCTC	2 cut(s)	800, 832
BpmI	CTGGAG	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	1215
BpuEI	CTTGAG	2 cut(s)	95, 835
BpuMI	CCSGG	1 cut(s)	447
BsaJI	CCNNGG	2 cut(s)	446, 621
BsaWI	WCCGGW	1 cut(s)	457
BsaXI	ACNNNNNCTCC	2 cut(s)	720, 750
Bse118I	RCCGGY	1 cut(s)	499
Bse1I	ACTGG	3 cut(s)	230, 374, 1022
Bse3DI	GCAATG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	446, 621
BseGI	GGATG	3 cut(s)	53, 930, 1012
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	2 cut(s)	732, 1206
BseNI	ACTGG	3 cut(s)	230, 374, 1022
BseRI	GAGGAG	1 cut(s)	1106
BseXI	GCAGC	5 cut(s)	116, 785, 1036, 1180, 1231
BseYI	CCCAGC	1 cut(s)	794
Bsh1236I	CGCG	3 cut(s)	623, 949, 1186
BshFI	GGCC	1 cut(s)	680
BsiSI	CCGG	4 cut(s)	322, 446, 458, 500
BsnI	GGCC	1 cut(s)	680
Bsp143I	GATC	4 cut(s)	213, 612, 760, 1206
BspACI	CCGC	5 cut(s)	313, 425, 621, 623, 1186
BspANI	GGCC	1 cut(s)	680
BspCNI	CTCAG	2 cut(s)	731, 1207
BspFNI	CGCG	3 cut(s)	623, 949, 1186
BspLI	GGNNCC	2 cut(s)	1029, 1095
BspPI	GGATC	1 cut(s)	1201
BsrDI	GCAATG	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	499
BsrI	ACTGG	3 cut(s)	230, 374, 1022
BssAI	RCCGGY	1 cut(s)	499
BssECI	CCNNGG	2 cut(s)	446, 621
BssMI	GATC	4 cut(s)	213, 612, 760, 1206
BstC8I	GCNNGC	2 cut(s)	412, 1191
BstDEI	CTNAG	5 cut(s)	576, 718, 1215, 1242, 1248
BstDSI	CCRYGG	1 cut(s)	621
BstF5I	GGATG	3 cut(s)	53, 930, 1012
BstFNI	CGCG	3 cut(s)	623, 949, 1186
BstH2I	RGCGCY	1 cut(s)	512
BstHHI	GCGC	3 cut(s)	511, 951, 1186
BstKTI	GATC	4 cut(s)	216, 615, 763, 1209
BstMBI	GATC	4 cut(s)	213, 612, 760, 1206
BstMWI	GCNNNNNNNGC	4 cut(s)	312, 487, 1190, 1219
BstSCI	CCNGG	1 cut(s)	445
BstUI	CGCG	3 cut(s)	623, 949, 1186
BstV1I	GCAGC	5 cut(s)	116, 785, 1036, 1180, 1231
BstX2I	RGATCY	1 cut(s)	1206
BstYI	RGATCY	1 cut(s)	1206
BsuRI	GGCC	1 cut(s)	680
BtgI	CCRYGG	1 cut(s)	621
BtsCI	GGATG	3 cut(s)	53, 930, 1012
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	3 cut(s)	405, 692, 1015
Cac8I	GCNNGC	2 cut(s)	412, 1191
CfoI	GCGC	3 cut(s)	511, 951, 1186
Cfr10I	RCCGGY	1 cut(s)	499
Cfr13I	GGNCC	2 cut(s)	468, 733
Cfr42I	CCGCGG	1 cut(s)	624
Csp6I	GTAC	2 cut(s)	484, 924
CviAII	CATG	3 cut(s)	281, 704, 890
CviQI	GTAC	2 cut(s)	484, 924
DdeI	CTNAG	5 cut(s)	576, 718, 1215, 1242, 1248
DpnI	GATC	4 cut(s)	215, 614, 762, 1208
DpnII	GATC	4 cut(s)	213, 612, 760, 1206
Eco32I	GATATC	1 cut(s)	724
Eco47I	GGWCC	2 cut(s)	468, 733
Eco57I	CTGAAG	3 cut(s)	238, 671, 716
EcoO109I	RGGNCCY	2 cut(s)	468, 733
EcoRI	GAATTC	1 cut(s)	778
EcoRV	GATATC	1 cut(s)	724
FaeI	CATG	3 cut(s)	284, 707, 893
FalI	AAGNNNNNCTT	2 cut(s)	1173, 1205
FatI	CATG	3 cut(s)	280, 703, 889
Fnu4HI	GCNGC	6 cut(s)	130, 799, 1050, 1187, 1194, 1220
FokI	GGATG	3 cut(s)	40, 917, 1019
Fsp4HI	GCNGC	6 cut(s)	130, 799, 1050, 1187, 1194, 1220
FspBI	CTAG	2 cut(s)	968, 1164
GlaI	GCGC	3 cut(s)	510, 950, 1185
GluI	GCNGC	6 cut(s)	130, 799, 1050, 1187, 1194, 1220
GsaI	CCCAGC	1 cut(s)	798
GsuI	CTGGAG	1 cut(s)	194
HaeII	RGCGCY	1 cut(s)	512
HaeIII	GGCC	1 cut(s)	680
HapII	CCGG	4 cut(s)	322, 446, 458, 500
HhaI	GCGC	3 cut(s)	511, 951, 1186
Hin1II	CATG	3 cut(s)	284, 707, 893
Hin6I	GCGC	3 cut(s)	509, 949, 1184
HinP1I	GCGC	3 cut(s)	509, 949, 1184
HinfI	GANTC	1 cut(s)	848
HpaII	CCGG	4 cut(s)	322, 446, 458, 500
HphI	GGTGA	4 cut(s)	126, 415, 592, 650
Hpy166II	GTNNAC	2 cut(s)	19, 911
Hpy188I	TCNGA	3 cut(s)	257, 721, 728
Hpy188III	TCNNGA	2 cut(s)	211, 526
Hpy8I	GTNNAC	2 cut(s)	19, 911
HpyAV	CCTTC	6 cut(s)	98, 551, 559, 649, 836, 887
HpyCH4IV	ACGT	1 cut(s)	1146
HpyCH4V	TGCA	8 cut(s)	587, 644, 667, 692, 801, 868, 1065, 1196
HpyF10VI	GCNNNNNNNGC	4 cut(s)	312, 487, 1190, 1219
HpyF3I	CTNAG	5 cut(s)	576, 718, 1215, 1242, 1248
HpySE526I	ACGT	1 cut(s)	1146
Hsp92II	CATG	3 cut(s)	284, 707, 893
HspAI	GCGC	3 cut(s)	509, 949, 1184
KspI	CCGCGG	1 cut(s)	624
Kzo9I	GATC	4 cut(s)	213, 612, 760, 1206
LmnI	GCTCC	1 cut(s)	1093
Lsp1109I	GCAGC	5 cut(s)	116, 785, 1036, 1180, 1231
LweI	GCATC	2 cut(s)	631, 988
MaeI	CTAG	2 cut(s)	968, 1164
MaeII	ACGT	1 cut(s)	1146
MalI	GATC	4 cut(s)	215, 614, 762, 1208
MboI	GATC	4 cut(s)	213, 612, 760, 1206
MboII	GAAGA	5 cut(s)	156, 162, 168, 664, 1082
MflI	RGATCY	1 cut(s)	1206
MlyI	GAGTC	1 cut(s)	842
MmeI	TCCRAC	1 cut(s)	107
MslI	CAYNNNNRTG	1 cut(s)	697
MspA1I	CMGCKG	5 cut(s)	425, 490, 623, 649, 798
MspI	CCGG	4 cut(s)	322, 446, 458, 500
MspR9I	CCNGG	1 cut(s)	447
MvnI	CGCG	3 cut(s)	623, 949, 1186
MwoI	GCNNNNNNNGC	4 cut(s)	312, 487, 1190, 1219
NciI	CCSGG	1 cut(s)	447
NdeII	GATC	4 cut(s)	213, 612, 760, 1206
NlaIII	CATG	3 cut(s)	284, 707, 893
NlaIV	GGNNCC	2 cut(s)	1029, 1095
OliI	CACNNNNGTG	1 cut(s)	697
PcsI	WCGNNNNNNNCGW	1 cut(s)	341
PkrI	GCNGC	6 cut(s)	131, 800, 1051, 1188, 1195, 1221
PleI	GAGTC	1 cut(s)	842
PpsI	GAGTC	1 cut(s)	842
PpuMI	RGGWCCY	2 cut(s)	468, 733
Psp5II	RGGWCCY	2 cut(s)	468, 733
PspFI	CCCAGC	1 cut(s)	794
PspN4I	GGNNCC	2 cut(s)	1029, 1095
PspPI	GGNCC	2 cut(s)	468, 733
PspPPI	RGGWCCY	2 cut(s)	468, 733
PsuI	RGATCY	1 cut(s)	1206
PvuII	CAGCTG	3 cut(s)	490, 649, 798
RsaI	GTAC	2 cut(s)	485, 925
RsaNI	GTAC	2 cut(s)	484, 924
RseI	CAYNNNNRTG	1 cut(s)	697
SacII	CCGCGG	1 cut(s)	624
SatI	GCNGC	6 cut(s)	130, 799, 1050, 1187, 1194, 1220
Sau3AI	GATC	4 cut(s)	213, 612, 760, 1206
Sau96I	GGNCC	2 cut(s)	468, 733
SchI	GAGTC	1 cut(s)	842
ScrFI	CCNGG	1 cut(s)	447
SfaNI	GCATC	2 cut(s)	631, 988
Sfr303I	CCGCGG	1 cut(s)	624
SgrBI	CCGCGG	1 cut(s)	624
SinI	GGWCC	2 cut(s)	468, 733
SmiMI	CAYNNNNRTG	1 cut(s)	697
SmlI	CTYRAG	2 cut(s)	110, 850
SmoI	CTYRAG	2 cut(s)	110, 850
SsiI	CCGC	5 cut(s)	313, 425, 621, 623, 1186
SspMI	CTAG	2 cut(s)	968, 1164
StyD4I	CCNGG	1 cut(s)	445
TaiI	ACGT	1 cut(s)	1149
TaqI	TCGA	2 cut(s)	790, 829
TauI	GCSGC	1 cut(s)	1189
TscAI	CASTG	3 cut(s)	405, 699, 1022
TseI	GCWGC	5 cut(s)	129, 798, 1049, 1193, 1219
TspDTI	ATGAA	6 cut(s)	156, 162, 284, 420, 802, 906
TspRI	CASTG	3 cut(s)	405, 699, 1022
VpaK11BI	GGWCC	2 cut(s)	468, 733
XapI	RAATTY	4 cut(s)	631, 742, 778, 838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	896
XspI	CTAG	2 cut(s)	968, 1164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.