Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014940

Physical Location & Seq

Genomic Coordinates Reverse (-)

19043411 .. 19044955

Gene Structure 1545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGATGATGGAAGAGAAACTTGTGATCAACGAATTGGAACTAGGGAAAGAGCTTGCTAACCGATTGATGAACAATCTCAAACACACTTCTTCTGTCGATTCCAACAAAACCTTGATCTCTGATATCCTCCGTATTTACCAGAATGCCATTTTCATGTTGAGCTTCAACCAAGACAAGAACATCCTTAAGCGAAGCCTTGAGATCGATGGAAAAGATTCTAAAAACGTCTTCAAAAAGAGGAAAGTATCGGAGAAGAACACAGAGAAAGTTAAGGTTTTTGTTGCAACAGAACAAGAAAATGGCTCTATTGATGATGGTCACTGCTGGAGAAAATATGGGCAAAAAGAGATTCATGGATCCAAAAATCCTAGAGCATATTACAGATGCACGCATCGATTCACACAAGACTGTTTAGCAGTGAAGCAAGTTCAGAAATCAGACACAGATCCTTCCCTTTTCGAAGTGAAGTATCTCGGAAACCACACTTGTAACAACATCACATCCCCGAAGACGACGACGAACTTCTCTGTTTCATTGACGAACACGAACATCTTTGAAGGAAACAGAGTACATGTTACAGAGCAATCGGAAGACATGAAACCGACCAAGTCCGAAGAAGTGATGATAAGCCTTGAAGATCTGGAGAACAAGAAGAACATTTTCAGAACGTTTTCTTTCTCTAACCATGAGATTGAGAACGGTGTGTGGAAAAGTAACCTTTTCTTGGGAAATTTCGTGGAAGATCTTTCTCCTGCAACATCAGGGTCTGCAATTACCAGCGAGGTTTTATCTGCACCTGCTGCTGTTGAGAATTCCGAAACTGCAGATTCGTATTTCTCGTCTTTGGACAATATTATCGATTTCGGACAGGATTGGTTGTGGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

295

Amino Acids

33.63

Weight (kDa)

5.73

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	104 - 164	1.5e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46400
fragaria_vesca	FvH4_7g16150
malus_domestica	MD01G1078000.v1.1 MD07G1146900.v1.1
prunus_persica	Prupe.2G185100_v2.0.a1
pyrus_communis	pycom07g14630
rosa_chinensis	RchiOBHm_Chr1g0359091
rosa_laevigata	RLG00000027900
rosa_multiflora	Rmu_sc0020948.1_g000005
rosa_roxburghii	Rroxscaffold_4G00297350
rosa_rugosa	Rorug01G0267800
rosa_samantha	Rh1AG281300 Rh1BG248200 Rh1CG265800 Rh1DG276700
rosa_wichuraiana	Rw1G025020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	805
Acc36I	ACCTGC	1 cut(s)	805
AclI	AACGTT	1 cut(s)	668
AclWI	GGATC	3 cut(s)	351, 364, 440
AcsI	RAATTY	2 cut(s)	730, 811
AfaI	GTAC	1 cut(s)	570
AfiI	CCNNNNNNNGG	1 cut(s)	724
AflII	CTTAAG	1 cut(s)	185
AflIII	ACRYGT	1 cut(s)	571
AgsI	TTSAA	4 cut(s)	166, 232, 557, 635
AluBI	AGCT	2 cut(s)	52, 162
AluI	AGCT	2 cut(s)	52, 162
AlwI	GGATC	3 cut(s)	351, 364, 440
AlwNI	CAGNNNCTG	1 cut(s)	767
ApeKI	GCWGC	1 cut(s)	800
ApoI	RAATTY	2 cut(s)	730, 811
Asp700I	GAANNNNTTC	3 cut(s)	214, 659, 670
AsuII	TTCGAA	1 cut(s)	459
BamHI	GGATCC	1 cut(s)	356
BbsI	GAAGAC	3 cut(s)	220, 515, 597
BbvI	GCAGC	1 cut(s)	787
BccI	CCATC	2 cut(s)	200, 308
BclI	TGATCA	1 cut(s)	24
BfaI	CTAG	2 cut(s)	41, 369
BfmI	CTRYAG	1 cut(s)	822
BfrI	CTTAAG	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	805
BglII	AGATCT	2 cut(s)	637, 742
BisI	GCNGC	1 cut(s)	801
BlsI	GCNGC	1 cut(s)	802
BmiI	GGNNCC	1 cut(s)	358
BmsI	GCATC	2 cut(s)	374, 400
BpiI	GAAGAC	3 cut(s)	220, 515, 597
BpmI	CTGGAG	2 cut(s)	346, 662
Bpu14I	TTCGAA	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	218
Bsa29I	ATCGAT	3 cut(s)	204, 394, 858
Bsc4I	CCNNNNNNNGG	1 cut(s)	724
BseCI	ATCGAT	3 cut(s)	204, 394, 858
BseGI	GGATG	2 cut(s)	180, 500
BseLI	CCNNNNNNNGG	1 cut(s)	724
BseXI	GCAGC	1 cut(s)	787
BsgI	GTGCAG	1 cut(s)	777
BshVI	ATCGAT	3 cut(s)	204, 394, 858
BslI	CCNNNNNNNGG	1 cut(s)	724
BsmI	GAATGC	1 cut(s)	148
Bsp119I	TTCGAA	1 cut(s)	459
Bsp143I	GATC	7 cut(s)	24, 114, 201, 356, 445, 637, 742
BspDI	ATCGAT	3 cut(s)	204, 394, 858
BspLI	GGNNCC	1 cut(s)	358
BspMAI	CTGCAG	1 cut(s)	826
BspMI	ACCTGC	1 cut(s)	805
BspPI	GGATC	3 cut(s)	351, 364, 440
BspT104I	TTCGAA	1 cut(s)	459
BspTI	CTTAAG	1 cut(s)	185
BssMI	GATC	7 cut(s)	24, 114, 201, 356, 445, 637, 742
Bst4CI	ACNGT	2 cut(s)	410, 701
Bst6I	CTCTTC	1 cut(s)	6
BstAFI	CTTAAG	1 cut(s)	185
BstAPI	GCANNNNNTGC	1 cut(s)	800
BstBI	TTCGAA	1 cut(s)	459
BstC8I	GCNNGC	2 cut(s)	54, 389
BstF5I	GGATG	2 cut(s)	180, 500
BstKTI	GATC	7 cut(s)	27, 117, 204, 359, 448, 640, 745
BstMBI	GATC	7 cut(s)	24, 114, 201, 356, 445, 637, 742
BstMWI	GCNNNNNNNGC	1 cut(s)	800
BstNSI	RCATGY	1 cut(s)	575
BstSFI	CTRYAG	1 cut(s)	822
BstV1I	GCAGC	1 cut(s)	787
BstV2I	GAAGAC	3 cut(s)	220, 515, 597
BstX2I	RGATCY	4 cut(s)	356, 445, 637, 742
BstYI	RGATCY	4 cut(s)	356, 445, 637, 742
Bsu15I	ATCGAT	3 cut(s)	204, 394, 858
BsuTUI	ATCGAT	3 cut(s)	204, 394, 858
BtsCI	GGATG	2 cut(s)	180, 500
BtsI	GCAGTG	2 cut(s)	319, 423
BtsIMutI	CAGTG	2 cut(s)	319, 423
BveI	ACCTGC	1 cut(s)	805
Cac8I	GCNNGC	2 cut(s)	54, 389
CaiI	CAGNNNCTG	1 cut(s)	767
ClaI	ATCGAT	3 cut(s)	204, 394, 858
Csp6I	GTAC	1 cut(s)	569
CviAII	CATG	5 cut(s)	154, 353, 572, 595, 686
CviJI	RGCY	5 cut(s)	52, 162, 195, 303, 630
CviKI_1	RGCY	5 cut(s)	52, 162, 195, 303, 630
CviQI	GTAC	1 cut(s)	569
DpnI	GATC	7 cut(s)	26, 116, 203, 358, 447, 639, 744
DpnII	GATC	7 cut(s)	24, 114, 201, 356, 445, 637, 742
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Eco32I	GATATC	1 cut(s)	124
EcoRI	GAATTC	1 cut(s)	811
EcoRV	GATATC	1 cut(s)	124
FaeI	CATG	5 cut(s)	157, 356, 575, 598, 689
FaiI	YATR	7 cut(s)	155, 336, 354, 376, 573, 596, 687
FalI	AAGNNNNNCTT	1 cut(s)	35
FatI	CATG	5 cut(s)	153, 352, 571, 594, 685
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	801
FokI	GGATG	2 cut(s)	167, 487
Fsp4HI	GCNGC	1 cut(s)	801
FspBI	CTAG	2 cut(s)	41, 369
GluI	GCNGC	1 cut(s)	801
GsuI	CTGGAG	2 cut(s)	346, 662
Hin1II	CATG	5 cut(s)	157, 356, 575, 598, 689
HinfI	GANTC	5 cut(s)	98, 215, 349, 396, 827
Hpy188III	TCNNGA	1 cut(s)	641
Hpy99I	CGWCG	2 cut(s)	517, 520
HpyAV	CCTTC	2 cut(s)	459, 551
HpyCH4III	ACNGT	2 cut(s)	410, 701
HpyCH4IV	ACGT	2 cut(s)	225, 668
HpyCH4V	TGCA	6 cut(s)	284, 387, 755, 770, 794, 824
HpyF10VI	GCNNNNNNNGC	1 cut(s)	800
HpySE526I	ACGT	2 cut(s)	225, 668
Hsp92II	CATG	5 cut(s)	157, 356, 575, 598, 689
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	7 cut(s)	24, 114, 201, 356, 445, 637, 742
LpnPI	CCDG	8 cut(s)	152, 310, 626, 747, 765, 790, 810, 854
Lsp1109I	GCAGC	1 cut(s)	787
LweI	GCATC	2 cut(s)	374, 400
MaeI	CTAG	2 cut(s)	41, 369
MaeII	ACGT	2 cut(s)	225, 668
MaeIII	GTNAC	4 cut(s)	317, 488, 574, 713
MalI	GATC	7 cut(s)	26, 116, 203, 358, 447, 639, 744
MboI	GATC	7 cut(s)	24, 114, 201, 356, 445, 637, 742
MflI	RGATCY	4 cut(s)	356, 445, 637, 742
MluCI	AATT	4 cut(s)	32, 730, 771, 811
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	3 cut(s)	137, 231, 775
MroXI	GAANNNNTTC	3 cut(s)	214, 659, 670
MseI	TTAA	2 cut(s)	186, 270
MslI	CAYNNNNRTG	1 cut(s)	152
MspCI	CTTAAG	1 cut(s)	185
Mva1269I	GAATGC	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	800
NdeII	GATC	7 cut(s)	24, 114, 201, 356, 445, 637, 742
NlaIII	CATG	5 cut(s)	157, 356, 575, 598, 689
NlaIV	GGNNCC	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	317
NspI	RCATGY	1 cut(s)	575
NspV	TTCGAA	1 cut(s)	459
PaqCI	CACCTGC	1 cut(s)	805
PciI	ACATGT	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	1 cut(s)	836
PctI	GAATGC	1 cut(s)	148
PdmI	GAANNNNTTC	3 cut(s)	214, 659, 670
PfeI	GAWTC	5 cut(s)	98, 215, 349, 396, 827
PflFI	GACNNNGTC	1 cut(s)	607
PkrI	GCNGC	1 cut(s)	802
PscI	ACATGT	1 cut(s)	571
Psp1406I	AACGTT	1 cut(s)	668
PspN4I	GGNNCC	1 cut(s)	358
PstI	CTGCAG	1 cut(s)	826
PstNI	CAGNNNCTG	1 cut(s)	767
PsuI	RGATCY	4 cut(s)	356, 445, 637, 742
PsyI	GACNNNGTC	1 cut(s)	607
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
RseI	CAYNNNNRTG	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	186, 270
SatI	GCNGC	1 cut(s)	801
Sau3AI	GATC	7 cut(s)	24, 114, 201, 356, 445, 637, 742
SetI	ASST	9 cut(s)	54, 113, 164, 228, 276, 671, 720, 786, 799
SfaNI	GCATC	2 cut(s)	374, 400
SfcI	CTRYAG	1 cut(s)	822
SfuI	TTCGAA	1 cut(s)	459
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	2 cut(s)	185, 197
SmoI	CTYRAG	2 cut(s)	185, 197
Sse9I	AATT	4 cut(s)	32, 730, 771, 811
SspI	AATATT	1 cut(s)	853
SspMI	CTAG	2 cut(s)	41, 369
TaaI	ACNGT	2 cut(s)	410, 701
TaiI	ACGT	2 cut(s)	228, 671
TaqI	TCGA	5 cut(s)	96, 204, 394, 459, 858
TasI	AATT	4 cut(s)	32, 730, 771, 811
TatI	WGTACW	1 cut(s)	568
TfiI	GAWTC	5 cut(s)	98, 215, 349, 396, 827
Tru1I	TTAA	2 cut(s)	186, 270
Tru9I	TTAA	2 cut(s)	186, 270
TscAI	CASTG	2 cut(s)	326, 423
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	1 cut(s)	800
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	5 cut(s)	83, 142, 341, 522, 611
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	2 cut(s)	326, 423
Tth111I	GACNNNGTC	1 cut(s)	607
Vha464I	CTTAAG	1 cut(s)	185
XapI	RAATTY	2 cut(s)	730, 811
XceI	RCATGY	1 cut(s)	575
XmnI	GAANNNNTTC	3 cut(s)	214, 659, 670
XspI	CTAG	2 cut(s)	41, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.