Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014940

Physical Location & Seq

Genomic Coordinates Reverse (-)

13887050 .. 13890026

Gene Structure 2977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g16150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAGAAGAGGAAGAGTGTGATGAGTAATTGGGACCAAAAGATTCTAGCAAGTGAGTTAACCCAAGGGAAGGAGCTGGCAGAGAAGCTCATGAACCAATTCCTCCACCCTTCATCATCCCAAGAAGAAAATGATCTGTTGCTTTCAAAGCTGCTATCTACATATGAAAAGGCACTCTCTGTGCTCACAAGGGATGTTGGTTCTGAAGGAGAGTCTAAGCAAATCCAAGTGATGGACTCACCTTGTTCATTTGGGAATAGTAGTAGCCCATTGAGTGAGATCTCTGACCAAGATTGCAAGAGCAAGAATGTCTTCAAGAAAAGGAAAACAATGCCCAAGAGGACTGAAGAAGTGAAGGTTTGCTCTGGAACAGGACAAGATGGGTCTCTTGATGATGGCTATAGTTGGAGAAAATATGGCCAAAAGGATATCCTTGGTGCTAATTACCCAAGAGGCTACTATAGATGCACACATAAAAACACACAAGGTTGCCCAGCCACAAAGCAAGTTCAAAAATCAGATGCAGACCCAACAATCTTTGTGGTAACCTATACAGGAGAACATACATGTCATCTAGTCCCTCAGATAAAAGGAAAGCAGAATGTTTCTCTTAAACAAGAATCCGGAACACCCAAACAGACACCAGAGAGATCGTTCAGCTTCGGACTAAGAGTTAAAACTGAGAATTTAAACACTAGGGAAGATGTAAAGGAGATATTTCCACCATTTTCCTTCCCTTCCACGCCAATAGAGTCCGAAAACAATGTGGTGGGAGAACATGTTTTCGCTGCAATGGCGAACGATTTCATGGGTGGTAGCTACGATCCAACATTCGGGTCTCCAACAACATTCGAATCAGACTACTTTGGAGCAGTGTCACCATGCCACTTTGGACTAGTAGGCAATGATGTGCAGACTTCAGAATCTGATCTCTCTCATGAGATGCTGTCGGCTTCCAATTCTGTGGCAAACTCACCAATGGGGGATTTTGGTTTCTCACTAGAGGATTTGGATTTTTACCCGTTTGAAAACAACCCAGAATGTATGTTTCCCCAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

354

Amino Acids

39.26

Weight (kDa)

5.23

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	131 - 191	4.4e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46400
fragaria_vesca	FvH4_7g16150
malus_domestica	MD01G1078000.v1.1 MD07G1146900.v1.1
prunus_persica	Prupe.2G185100_v2.0.a1
pyrus_communis	pycom07g14630
rosa_chinensis	RchiOBHm_Chr1g0359091
rosa_laevigata	RLG00000027900
rosa_multiflora	Rmu_sc0020948.1_g000005
rosa_roxburghii	Rroxscaffold_4G00297350
rosa_rugosa	Rorug01G0267800
rosa_samantha	Rh1AG281300 Rh1BG248200 Rh1CG265800 Rh1DG276700
rosa_wichuraiana	Rw1G025020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccIII	TCCGGA	1 cut(s)	623
AclWI	GGATC	1 cut(s)	818
AcoI	YGGCCR	1 cut(s)	418
AcsI	RAATTY	1 cut(s)	685
AcuI	CTGAAG	3 cut(s)	225, 366, 903
AfiI	CCNNNNNNNGG	3 cut(s)	70, 232, 833
AflIII	ACRYGT	2 cut(s)	566, 778
AgsI	TTSAA	4 cut(s)	147, 316, 512, 1028
AhlI	ACTAGT	1 cut(s)	895
AluBI	AGCT	5 cut(s)	76, 88, 151, 660, 819
AluI	AGCT	5 cut(s)	76, 88, 151, 660, 819
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	2 cut(s)	390, 843
AlwI	GGATC	1 cut(s)	818
AlwNI	CAGNNNCTG	1 cut(s)	926
Aor13HI	TCCGGA	1 cut(s)	623
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	2 cut(s)	151, 788
ApoI	RAATTY	1 cut(s)	685
Asp700I	GAANNNNTTC	3 cut(s)	98, 311, 803
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	3 cut(s)	231, 870, 966
AsuII	TTCGAA	1 cut(s)	852
AvaII	GGWCC	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	420
BbsI	GAAGAC	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	138, 775
BccI	CCATC	3 cut(s)	226, 374, 389
BcoDI	GTCTC	2 cut(s)	390, 843
BcuI	ACTAGT	1 cut(s)	895
BfaI	CTAG	5 cut(s)	47, 575, 696, 896, 1001
BfmI	CTRYAG	2 cut(s)	400, 460
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	2 cut(s)	152, 789
BlsI	GCNGC	2 cut(s)	153, 790
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	35
BmsI	GCATC	3 cut(s)	455, 511, 933
BpiI	GAAGAC	1 cut(s)	304
Bpu14I	TTCGAA	1 cut(s)	852
BsaI	GGTCTC	2 cut(s)	390, 843
BsaJI	CCNNGG	2 cut(s)	64, 433
BsaWI	WCCGGW	1 cut(s)	623
BsaXI	ACNNNNNCTCC	2 cut(s)	765, 795
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 232, 833
Bse3DI	GCAATG	2 cut(s)	798, 910
BseAI	TCCGGA	1 cut(s)	623
BseDI	CCNNGG	2 cut(s)	64, 433
BseGI	GGATG	2 cut(s)	116, 199
BseLI	CCNNNNNNNGG	3 cut(s)	70, 232, 833
BseMI	GCAATG	2 cut(s)	798, 910
BseMII	CTCAG	2 cut(s)	596, 672
BseXI	GCAGC	2 cut(s)	138, 775
BseYI	CCCAGC	2 cut(s)	493, 1053
BsgI	GTGCAG	1 cut(s)	932
BshFI	GGCC	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	624
BslFI	GGGAC	2 cut(s)	47, 563
BslI	CCNNNNNNNGG	3 cut(s)	70, 232, 833
BsmAI	GTCTC	2 cut(s)	390, 843
BsmFI	GGGAC	2 cut(s)	47, 563
BsnI	GGCC	1 cut(s)	420
Bso31I	GGTCTC	2 cut(s)	390, 843
Bsp119I	TTCGAA	1 cut(s)	852
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp13I	TCCGGA	1 cut(s)	623
Bsp143I	GATC	5 cut(s)	133, 279, 650, 823, 928
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	2 cut(s)	595, 673
BspEI	TCCGGA	1 cut(s)	623
BspHI	TCATGA	2 cut(s)	90, 937
BspLI	GGNNCC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	818
BspT104I	TTCGAA	1 cut(s)	852
BspTNI	GGTCTC	2 cut(s)	390, 843
BsrDI	GCAATG	2 cut(s)	798, 910
BssECI	CCNNGG	2 cut(s)	64, 433
BssMI	GATC	5 cut(s)	133, 279, 650, 823, 928
BssT1I	CCWWGG	2 cut(s)	64, 433
Bst6I	CTCTTC	2 cut(s)	2, 8
BstBI	TTCGAA	1 cut(s)	852
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	4 cut(s)	216, 582, 668, 681
BstEII	GGTNACC	1 cut(s)	544
BstF5I	GGATG	2 cut(s)	116, 199
BstKTI	GATC	5 cut(s)	136, 282, 653, 826, 931
BstMAI	GTCTC	2 cut(s)	390, 843
BstMBI	GATC	5 cut(s)	133, 279, 650, 823, 928
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 794
BstNSI	RCATGY	2 cut(s)	570, 782
BstPI	GGTNACC	1 cut(s)	544
BstSFI	CTRYAG	2 cut(s)	400, 460
BstV1I	GCAGC	2 cut(s)	138, 775
BstV2I	GAAGAC	1 cut(s)	304
BstX2I	RGATCY	1 cut(s)	279
BstXI	CCANNNNNNTGG	1 cut(s)	964
BstYI	RGATCY	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	420
BtsCI	GGATG	2 cut(s)	116, 199
BtsI	GCAGTG	1 cut(s)	879
BtsIMutI	CAGTG	1 cut(s)	879
Cac8I	GCNNGC	1 cut(s)	78
CaiI	CAGNNNCTG	1 cut(s)	926
CciI	TCATGA	2 cut(s)	90, 937
Cfr13I	GGNCC	1 cut(s)	34
CspCI	CAANNNNNGTGG	2 cut(s)	522, 557
CviAII	CATG	6 cut(s)	91, 567, 779, 808, 882, 938
DdeI	CTNAG	4 cut(s)	216, 582, 668, 681
DpnI	GATC	5 cut(s)	135, 281, 652, 825, 930
DpnII	GATC	5 cut(s)	133, 279, 650, 823, 928
DraI	TTTAAA	1 cut(s)	690
EaeI	YGGCCR	1 cut(s)	418
Eam1104I	CTCTTC	2 cut(s)	2, 8
EarI	CTCTTC	2 cut(s)	2, 8
Eco130I	CCWWGG	2 cut(s)	64, 433
Eco31I	GGTCTC	2 cut(s)	390, 843
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	3 cut(s)	225, 366, 903
Eco91I	GGTNACC	1 cut(s)	544
EcoO65I	GGTNACC	1 cut(s)	544
EcoRV	GATATC	1 cut(s)	430
EcoT14I	CCWWGG	2 cut(s)	64, 433
ErhI	CCWWGG	2 cut(s)	64, 433
FaeI	CATG	6 cut(s)	94, 570, 782, 811, 885, 941
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FaqI	GGGAC	2 cut(s)	47, 563
FatI	CATG	6 cut(s)	90, 566, 778, 807, 881, 937
FauNDI	CATATG	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	152, 789
FokI	GGATG	2 cut(s)	103, 206
Fsp4HI	GCNGC	2 cut(s)	152, 789
FspBI	CTAG	5 cut(s)	47, 575, 696, 896, 1001
GluI	GCNGC	2 cut(s)	152, 789
GsaI	CCCAGC	2 cut(s)	497, 1057
HaeIII	GGCC	1 cut(s)	420
HapII	CCGG	1 cut(s)	624
Hin1II	CATG	6 cut(s)	94, 570, 782, 811, 885, 941
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HinfI	GANTC	7 cut(s)	43, 212, 236, 620, 752, 854, 923
HpaI	GTTAAC	1 cut(s)	60
HpaII	CCGG	1 cut(s)	624
HphI	GGTGA	3 cut(s)	231, 870, 966
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	9 cut(s)	205, 286, 520, 585, 665, 757, 859, 922, 928
Hpy188III	TCNNGA	6 cut(s)	91, 316, 366, 389, 624, 938
Hpy8I	GTNNAC	1 cut(s)	60
HpyAV	CCTTC	6 cut(s)	64, 120, 200, 349, 742, 747
HpyCH4V	TGCA	5 cut(s)	297, 468, 524, 791, 913
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 794
HpyF3I	CTNAG	4 cut(s)	216, 582, 668, 681
Hsp92II	CATG	6 cut(s)	94, 570, 782, 811, 885, 941
Kpn2I	TCCGGA	1 cut(s)	623
KspAI	GTTAAC	1 cut(s)	60
Kzo9I	GATC	5 cut(s)	133, 279, 650, 823, 928
LmnI	GCTCC	2 cut(s)	73, 869
LpnPI	CCDG	8 cut(s)	62, 351, 357, 507, 540, 637, 657, 1050
Lsp1109I	GCAGC	2 cut(s)	138, 775
LweI	GCATC	3 cut(s)	455, 511, 933
MaeI	CTAG	5 cut(s)	47, 575, 696, 896, 1001
MaeIII	GTNAC	2 cut(s)	544, 876
MalI	GATC	5 cut(s)	135, 281, 652, 825, 930
MboI	GATC	5 cut(s)	133, 279, 650, 823, 928
MboII	GAAGA	6 cut(s)	19, 25, 137, 304, 359, 713
MflI	RGATCY	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	186
MlsI	TGGCCA	1 cut(s)	420
MluCI	AATT	5 cut(s)	28, 98, 442, 685, 958
MluNI	TGGCCA	1 cut(s)	420
MlyI	GAGTC	3 cut(s)	221, 230, 761
MmeI	TCCRAC	3 cut(s)	386, 851, 866
MnlI	CCTC	6 cut(s)	3, 113, 333, 446, 591, 997
Mox20I	TGGCCA	1 cut(s)	420
MroI	TCCGGA	1 cut(s)	623
MroXI	GAANNNNTTC	3 cut(s)	98, 311, 803
MscI	TGGCCA	1 cut(s)	420
MseI	TTAA	5 cut(s)	59, 612, 675, 689, 1060
Msp20I	TGGCCA	1 cut(s)	420
MspI	CCGG	1 cut(s)	624
MwoI	GCNNNNNNNGC	2 cut(s)	148, 794
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	5 cut(s)	133, 279, 650, 823, 928
NlaIII	CATG	6 cut(s)	94, 570, 782, 811, 885, 941
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	876
NspI	RCATGY	2 cut(s)	570, 782
NspV	TTCGAA	1 cut(s)	852
PagI	TCATGA	2 cut(s)	90, 937
PciI	ACATGT	2 cut(s)	566, 778
PdmI	GAANNNNTTC	3 cut(s)	98, 311, 803
PfeI	GAWTC	4 cut(s)	43, 620, 854, 923
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	153, 790
PleI	GAGTC	3 cut(s)	220, 230, 760
PpsI	GAGTC	3 cut(s)	220, 230, 760
PscI	ACATGT	2 cut(s)	566, 778
PspEI	GGTNACC	1 cut(s)	544
PspFI	CCCAGC	2 cut(s)	493, 1053
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	926
PsuI	RGATCY	1 cut(s)	279
SaqAI	TTAA	5 cut(s)	59, 612, 675, 689, 1060
SatI	GCNGC	2 cut(s)	152, 789
Sau3AI	GATC	5 cut(s)	133, 279, 650, 823, 928
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	3 cut(s)	221, 230, 761
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	9 cut(s)	78, 90, 153, 244, 360, 490, 551, 662, 821
SfaNI	GCATC	3 cut(s)	455, 511, 933
SfcI	CTRYAG	2 cut(s)	400, 460
SfuI	TTCGAA	1 cut(s)	852
SinI	GGWCC	1 cut(s)	34
SpeI	ACTAGT	1 cut(s)	895
Sse9I	AATT	5 cut(s)	28, 98, 442, 685, 958
SspMI	CTAG	5 cut(s)	47, 575, 696, 896, 1001
StyI	CCWWGG	2 cut(s)	64, 433
TaqI	TCGA	1 cut(s)	852
TasI	AATT	5 cut(s)	28, 98, 442, 685, 958
TfiI	GAWTC	4 cut(s)	43, 620, 854, 923
Tru1I	TTAA	5 cut(s)	59, 612, 675, 689, 1060
Tru9I	TTAA	5 cut(s)	59, 612, 675, 689, 1060
TscAI	CASTG	1 cut(s)	879
TseFI	GTSAC	1 cut(s)	876
TseI	GCWGC	2 cut(s)	151, 788
Tsp45I	GTSAC	1 cut(s)	876
TspDTI	ATGAA	5 cut(s)	102, 107, 180, 237, 796
TspRI	CASTG	1 cut(s)	879
Van91I	CCANNNNNTGG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	685
XceI	RCATGY	2 cut(s)	570, 782
XmnI	GAANNNNTTC	3 cut(s)	98, 311, 803
XspI	CTAG	5 cut(s)	47, 575, 696, 896, 1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.