Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0014940

Physical Location & Seq

Genomic Coordinates Reverse (-)

16585516 .. 16586088

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g14630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAGAAGAGGAAGAGCATGGAGTGGGAGCAGAAGAGTCTAACCAATGAGCTAACTCAAGGGAAGGAGCTGGCGGAGCAGCTGCTGAGCCAACTCCACCATTCTTCCCCACAAGAAACAAAAGACTTTCTGATTTCAAAGATACTTTTTTCATATGACAAGGCACTCTCACTGCTCACAGGCAGTGGGGATGGCTCTGATGGAGAATCCAAGCACATCCCAGCTCATGAAAGTATGTTGGAATCACCAACTTCATTTGGCAATAGTAGCCCACTGAGTGGGCTCTCTGACCAAGATTGCAAGGACAAAAATTCCTTGAAGAAGAGGAAAACAATGCCCAGGTGGACTAAGGAAGTGAAGGTTTCCCCTGGAACAGAGTTAGATGGGAGTCTTGATGATGGGTATAGTTGGAGAAAATATGGCCAAAAGGATATCCTTGGAACTAATCATCCAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

153

Amino Acids

17.04

Weight (kDa)

6.52

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	132 - 152	9.1e-07	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46400
fragaria_vesca	FvH4_7g16150
malus_domestica	MD01G1078000.v1.1 MD07G1146900.v1.1
prunus_persica	Prupe.2G185100_v2.0.a1
pyrus_communis	pycom07g14630
rosa_chinensis	RchiOBHm_Chr1g0359091
rosa_laevigata	RLG00000027900
rosa_multiflora	Rmu_sc0020948.1_g000005
rosa_roxburghii	Rroxscaffold_4G00297350
rosa_rugosa	Rorug01G0267800
rosa_samantha	Rh1AG281300 Rh1BG248200 Rh1CG265800 Rh1DG276700
rosa_wichuraiana	Rw1G025020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	278
AciI	CCGC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	1 cut(s)	310
AdeI	CACNNNGTG	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	138, 319
AjnI	CCWGG	2 cut(s)	338, 367
AloI	GAACNNNNNNTCC	1 cut(s)	433
AluBI	AGCT	4 cut(s)	52, 70, 82, 224
AluI	AGCT	4 cut(s)	52, 70, 82, 224
AlwNI	CAGNNNCTG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	421
ApeKI	GCWGC	2 cut(s)	79, 82
ApoI	RAATTY	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	237
BalI	TGGCCA	1 cut(s)	423
BanII	GRGCYC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	69, 91
BccI	CCATC	4 cut(s)	185, 194, 377, 392
BciT130I	CCWGG	2 cut(s)	340, 369
BisI	GCNGC	2 cut(s)	80, 83
BlpI	GCTNAGC	1 cut(s)	86
BlsI	GCNGC	2 cut(s)	81, 84
Bme1390I	CCNGG	2 cut(s)	340, 369
BmrFI	CCNGG	2 cut(s)	340, 369
Bpu1102I	GCTNAGC	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	42
BsaJI	CCNNGG	4 cut(s)	338, 367, 436, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
BseBI	CCWGG	2 cut(s)	340, 369
BseDI	CCNNGG	4 cut(s)	338, 367, 436, 452
BseGI	GGATG	3 cut(s)	196, 216, 448
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMII	CTCAG	2 cut(s)	77, 266
BseXI	GCAGC	2 cut(s)	69, 91
BseYI	CCCAGC	1 cut(s)	220
BshFI	GGCC	1 cut(s)	423
BslI	CCNNNNNNNGG	1 cut(s)	278
BsnI	GGCC	1 cut(s)	423
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp1720I	GCTNAGC	1 cut(s)	86
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	423
BspCNI	CTCAG	2 cut(s)	78, 267
BspHI	TCATGA	1 cut(s)	226
BspQI	GCTCTTC	1 cut(s)	8
BssECI	CCNNGG	4 cut(s)	338, 367, 436, 452
BssT1I	CCWWGG	2 cut(s)	436, 452
Bst2UI	CCWGG	2 cut(s)	340, 369
Bst6I	CTCTTC	4 cut(s)	2, 8, 29, 317
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	3 cut(s)	86, 275, 348
BstF5I	GGATG	3 cut(s)	196, 216, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 267
BstNI	CCWGG	2 cut(s)	340, 369
BstSCI	CCNGG	2 cut(s)	338, 367
BstV1I	GCAGC	2 cut(s)	69, 91
BsuRI	GGCC	1 cut(s)	423
BtsCI	GGATG	3 cut(s)	196, 216, 448
BtsI	GCAGTG	2 cut(s)	170, 190
BtsIMutI	CAGTG	3 cut(s)	170, 190, 272
Cac8I	GCNNGC	1 cut(s)	72
CaiI	CAGNNNCTG	1 cut(s)	85
CciI	TCATGA	1 cut(s)	226
CviAII	CATG	2 cut(s)	19, 227
CviJI	RGCY	9 cut(s)	52, 70, 82, 90, 195, 224, 270, 283, 423
CviKI_1	RGCY	9 cut(s)	52, 70, 82, 90, 195, 224, 270, 283, 423
DdeI	CTNAG	3 cut(s)	86, 275, 348
DraIII	CACNNNGTG	1 cut(s)	278
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	4 cut(s)	2, 8, 29, 317
EarI	CTCTTC	4 cut(s)	2, 8, 29, 317
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	2 cut(s)	436, 452
Eco24I	GRGCYC	1 cut(s)	285
Eco32I	GATATC	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	338, 367
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	2 cut(s)	436, 452
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	2 cut(s)	436, 452
FaeI	CATG	2 cut(s)	22, 230
FaiI	YATR	7 cut(s)	20, 154, 156, 228, 236, 405, 420
FatI	CATG	2 cut(s)	18, 226
FauNDI	CATATG	1 cut(s)	154
Fnu4HI	GCNGC	2 cut(s)	80, 83
FokI	GGATG	3 cut(s)	203, 203, 435
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	2 cut(s)	80, 83
GluI	GCNGC	2 cut(s)	80, 83
GsaI	CCCAGC	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	423
Hin1II	CATG	2 cut(s)	22, 230
HinfI	GANTC	4 cut(s)	37, 206, 242, 388
HphI	GGTGA	1 cut(s)	237
Hpy166II	GTNNAC	1 cut(s)	345
Hpy188I	TCNGA	3 cut(s)	132, 199, 289
Hpy188III	TCNNGA	2 cut(s)	227, 392
Hpy8I	GTNNAC	1 cut(s)	345
HpyAV	CCTTC	2 cut(s)	58, 352
HpyCH4V	TGCA	1 cut(s)	300
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 267
HpyF3I	CTNAG	3 cut(s)	86, 275, 348
Hsp92II	CATG	2 cut(s)	22, 230
LguI	GCTCTTC	1 cut(s)	8
LmnI	GCTCC	3 cut(s)	28, 67, 76
LpnPI	CCDG	7 cut(s)	56, 165, 234, 325, 352, 354, 381
Lsp1109I	GCAGC	2 cut(s)	69, 91
MboII	GAAGA	6 cut(s)	19, 25, 46, 96, 331, 334
MhlI	GDGCHC	1 cut(s)	285
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	1 cut(s)	310
MluNI	TGGCCA	1 cut(s)	423
MlyI	GAGTC	2 cut(s)	46, 397
MmeI	TCCRAC	2 cut(s)	219, 389
MnlI	CCTC	2 cut(s)	3, 318
Mox20I	TGGCCA	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	423
Msp20I	TGGCCA	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	82
MspR9I	CCNGG	2 cut(s)	340, 369
MvaI	CCWGG	2 cut(s)	340, 369
MwoI	GCNNNNNNNGC	2 cut(s)	76, 267
NdeI	CATATG	1 cut(s)	154
NlaIII	CATG	2 cut(s)	22, 230
PagI	TCATGA	1 cut(s)	226
PciSI	GCTCTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	206, 242
PflMI	CCANNNNNTGG	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	81, 84
PleI	GAGTC	2 cut(s)	45, 396
PpsI	GAGTC	2 cut(s)	45, 396
Psp6I	CCWGG	2 cut(s)	338, 367
PspFI	CCCAGC	1 cut(s)	220
PspGI	CCWGG	2 cut(s)	338, 367
PstNI	CAGNNNCTG	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	8
SatI	GCNGC	2 cut(s)	80, 83
SchI	GAGTC	2 cut(s)	46, 397
ScrFI	CCNGG	2 cut(s)	340, 369
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	7 cut(s)	54, 72, 84, 226, 344, 363, 458
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	1 cut(s)	310
SsiI	CCGC	1 cut(s)	74
StyD4I	CCNGG	2 cut(s)	338, 367
StyI	CCWWGG	2 cut(s)	436, 452
TasI	AATT	1 cut(s)	310
TfiI	GAWTC	2 cut(s)	206, 242
TscAI	CASTG	3 cut(s)	177, 190, 279
TseI	GCWGC	2 cut(s)	79, 82
TspDTI	ATGAA	3 cut(s)	141, 243, 243
TspRI	CASTG	3 cut(s)	177, 190, 279
Van91I	CCANNNNNTGG	1 cut(s)	278
XapI	RAATTY	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.