Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0014940

Physical Location & Seq

Genomic Coordinates Reverse (-)

51031574 .. 51033554

Gene Structure 1981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG281300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAGAAGAGGAAGAGTATGATGGGTAATTGGGAGCAAAAGATTCTAAAAAGTGAGTTAACCCAGGGGAAGGAGCTGGCACAGAAGCTCATGAATCATCTCCACCACTCTTCATCATCTCAAGAAGGAGAATTCTTGATTTCAAAGCTACTATCTTCATATGAAAAGGCACTCTCTGTGCTCACAAGGGATGTTGGTTCTGAAGGAGAAATCAAGCAAATCCAAGTGTTGGACTCACCTTGTTCCTTTGGGAATAGTAGTAGCCCATTGAGTGAGATCTCTGACCACGATTGCAAGAACAAGAATGTCTTCAAGAAAAGGAAAACAATGCCCAAGAGGACTGAAGAAGTGAAGGTTTGCTCTGGAACAGGACAAGATGGCTCTCTTGATGATGGCTATAGTTGGAGAAAATATGGCCAAAAGGATATCCTTGGTGCTAATTACCCAAGAGGCTACTATCGATGCACACATAGAAACACACAAGGTTGCCTAGCCACAAAGCAAGTTCAAAAATCAGATGCAGACCCAACAATCTTTATGGTAACTTATACAGGAGTACATTCTTGTCACCTAGTCGCTCAGTTAAACGGAAAGCAGAATGTTTCTCTTAAACAAGAAGCAGGAACACCGAGACAGACACCAGAAAAATCGTTCAGTTTTGGGCTTAGAGTTAAAACTGAGAATTTGGACACTAGGGAGGAGGGATTAAAGGATATATTTCCATCATTTTCCTTCTCTCCCACGCCAATAGAGTCTGAAAACAATGTGGTGGAAGACCATGTTTTCGCTGCAATTGAGAACGATTTCCTGGGTGGTAGCTACGCTCAAACATTCGGGTCTCCGGCAACATTCGAATCAGATTACTTTGCGGCAGTGTCACTATGCCACTTTGGACTAGTAGGCAATGATGTGCAAACTTCAGATTCTGATCTCACTCATGAGATACTATCGGCCTCAACTTCTGTGGCCAACTCACCAATTGGGGATTTCGGTTTCTCACTAGAGGATTTGGATTTTTACCCATTTGAAAACAACCCAGAATCTACTTTTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

351

Amino Acids

38.96

Weight (kDa)

5.44

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	130 - 190	1.1e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46400
fragaria_vesca	FvH4_7g16150
malus_domestica	MD01G1078000.v1.1 MD07G1146900.v1.1
prunus_persica	Prupe.2G185100_v2.0.a1
pyrus_communis	pycom07g14630
rosa_chinensis	RchiOBHm_Chr1g0359091
rosa_laevigata	RLG00000027900
rosa_multiflora	Rmu_sc0020948.1_g000005
rosa_roxburghii	Rroxscaffold_4G00297350
rosa_rugosa	Rorug01G0267800
rosa_samantha	Rh1AG281300 Rh1BG248200 Rh1CG265800 Rh1DG276700
rosa_wichuraiana	Rw1G025020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	229
AciI	CCGC	1 cut(s)	869
AcoI	YGGCCR	2 cut(s)	415, 966
AcsI	RAATTY	2 cut(s)	131, 682
AcuI	CTGAAG	3 cut(s)	222, 363, 903
AfaI	GTAC	1 cut(s)	558
AfiI	CCNNNNNNNGG	2 cut(s)	70, 229
AgsI	TTSAA	4 cut(s)	144, 313, 509, 1028
AhlI	ACTAGT	1 cut(s)	895
AjnI	CCWGG	2 cut(s)	63, 807
AluBI	AGCT	4 cut(s)	76, 88, 148, 819
AluI	AGCT	4 cut(s)	76, 88, 148, 819
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	2 cut(s)	625, 843
AlwNI	CAGNNNCTG	1 cut(s)	926
AoxI	GGCC	3 cut(s)	415, 951, 966
ApeKI	GCWGC	1 cut(s)	788
ApoI	RAATTY	2 cut(s)	131, 682
ArsI	GACNNNNNNTTYG	2 cut(s)	767, 799
Asp700I	GAANNNNTTC	2 cut(s)	308, 803
AsuHPI	GGTGA	3 cut(s)	228, 560, 966
AsuII	TTCGAA	1 cut(s)	852
BalI	TGGCCA	2 cut(s)	417, 968
BbsI	GAAGAC	2 cut(s)	301, 780
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	775
BccI	CCATC	4 cut(s)	16, 371, 386, 730
BciT130I	CCWGG	2 cut(s)	65, 809
BcoDI	GTCTC	2 cut(s)	625, 843
BcuI	ACTAGT	1 cut(s)	895
BfaI	CTAG	6 cut(s)	491, 572, 693, 896, 1001, 1054
BfmI	CTRYAG	1 cut(s)	397
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	2 cut(s)	789, 870
BlsI	GCNGC	2 cut(s)	790, 871
Bme1390I	CCNGG	2 cut(s)	65, 809
BmrFI	CCNGG	2 cut(s)	65, 809
BmsI	GCATC	2 cut(s)	452, 508
BpiI	GAAGAC	2 cut(s)	301, 780
Bpu14I	TTCGAA	1 cut(s)	852
BpuEI	CTTGAG	1 cut(s)	105
Bsa29I	ATCGAT	1 cut(s)	460
BsaBI	GATNNNNATC	1 cut(s)	927
BsaI	GGTCTC	1 cut(s)	843
BsaJI	CCNNGG	4 cut(s)	63, 64, 430, 808
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 229
Bse3DI	GCAATG	1 cut(s)	910
Bse8I	GATNNNNATC	1 cut(s)	927
BseBI	CCWGG	2 cut(s)	65, 809
BseCI	ATCGAT	1 cut(s)	460
BseDI	CCNNGG	4 cut(s)	63, 64, 430, 808
BseGI	GGATG	1 cut(s)	196
BseJI	GATNNNNATC	1 cut(s)	927
BseLI	CCNNNNNNNGG	2 cut(s)	70, 229
BseMI	GCAATG	1 cut(s)	910
BseMII	CTCAG	2 cut(s)	593, 669
BseRI	GAGGAG	1 cut(s)	713
BseXI	GCAGC	1 cut(s)	775
BshFI	GGCC	3 cut(s)	417, 953, 968
BshVI	ATCGAT	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	842
BslI	CCNNNNNNNGG	2 cut(s)	70, 229
BsmAI	GTCTC	2 cut(s)	625, 843
BsnI	GGCC	3 cut(s)	417, 953, 968
Bso31I	GGTCTC	1 cut(s)	843
Bsp119I	TTCGAA	1 cut(s)	852
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	2 cut(s)	276, 928
BspACI	CCGC	1 cut(s)	869
BspANI	GGCC	3 cut(s)	417, 953, 968
BspCNI	CTCAG	2 cut(s)	592, 670
BspDI	ATCGAT	1 cut(s)	460
BspHI	TCATGA	2 cut(s)	90, 937
BspT104I	TTCGAA	1 cut(s)	852
BspTNI	GGTCTC	1 cut(s)	843
BsrDI	GCAATG	1 cut(s)	910
BssECI	CCNNGG	4 cut(s)	63, 64, 430, 808
BssMI	GATC	2 cut(s)	276, 928
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	2 cut(s)	65, 809
Bst6I	CTCTTC	3 cut(s)	2, 8, 115
BstBI	TTCGAA	1 cut(s)	852
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	3 cut(s)	579, 665, 678
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	2 cut(s)	279, 931
BstMAI	GTCTC	2 cut(s)	625, 843
BstMBI	GATC	2 cut(s)	276, 928
BstNI	CCWGG	2 cut(s)	65, 809
BstSCI	CCNGG	2 cut(s)	63, 807
BstSFI	CTRYAG	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	775
BstV2I	GAAGAC	2 cut(s)	301, 780
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
Bsu15I	ATCGAT	1 cut(s)	460
BsuRI	GGCC	3 cut(s)	417, 953, 968
BsuTUI	ATCGAT	1 cut(s)	460
BtsCI	GGATG	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	879
BtsIMutI	CAGTG	1 cut(s)	879
Cac8I	GCNNGC	1 cut(s)	78
CaiI	CAGNNNCTG	1 cut(s)	926
CciI	TCATGA	2 cut(s)	90, 937
ClaI	ATCGAT	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	557
CspCI	CAANNNNNGTGG	2 cut(s)	945, 980
CviAII	CATG	3 cut(s)	91, 779, 938
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	3 cut(s)	579, 665, 678
DpnI	GATC	2 cut(s)	278, 930
DpnII	GATC	2 cut(s)	276, 928
EaeI	YGGCCR	2 cut(s)	415, 966
Eam1104I	CTCTTC	3 cut(s)	2, 8, 115
EarI	CTCTTC	3 cut(s)	2, 8, 115
Eco130I	CCWWGG	1 cut(s)	430
Eco31I	GGTCTC	1 cut(s)	843
Eco32I	GATATC	1 cut(s)	427
Eco57I	CTGAAG	3 cut(s)	222, 363, 903
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	63, 807
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	3 cut(s)	94, 782, 941
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FatI	CATG	3 cut(s)	90, 778, 937
FauNDI	CATATG	1 cut(s)	160
Fnu4HI	GCNGC	2 cut(s)	789, 870
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	2 cut(s)	789, 870
FspBI	CTAG	6 cut(s)	491, 572, 693, 896, 1001, 1054
GluI	GCNGC	2 cut(s)	789, 870
HaeIII	GGCC	3 cut(s)	417, 953, 968
HapII	CCGG	1 cut(s)	842
Hin1II	CATG	3 cut(s)	94, 782, 941
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HinfI	GANTC	7 cut(s)	43, 94, 233, 752, 854, 923, 1040
HpaI	GTTAAC	1 cut(s)	60
HpaII	CCGG	1 cut(s)	842
HphI	GGTGA	3 cut(s)	228, 560, 966
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	7 cut(s)	202, 283, 517, 757, 859, 922, 928
Hpy188III	TCNNGA	7 cut(s)	91, 122, 136, 313, 363, 386, 938
Hpy8I	GTNNAC	1 cut(s)	60
HpyAV	CCTTC	5 cut(s)	64, 119, 197, 346, 742
HpyCH4V	TGCA	5 cut(s)	294, 465, 521, 791, 913
HpyF3I	CTNAG	3 cut(s)	579, 665, 678
Hsp92II	CATG	3 cut(s)	94, 782, 941
KspAI	GTTAAC	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	276, 928
LmnI	GCTCC	2 cut(s)	34, 73
Lsp1109I	GCAGC	1 cut(s)	775
LweI	GCATC	2 cut(s)	452, 508
MaeI	CTAG	6 cut(s)	491, 572, 693, 896, 1001, 1054
MaeIII	GTNAC	3 cut(s)	541, 566, 876
MalI	GATC	2 cut(s)	278, 930
MboI	GATC	2 cut(s)	276, 928
MboII	GAAGA	7 cut(s)	19, 25, 102, 147, 301, 356, 785
MfeI	CAATTG	2 cut(s)	792, 978
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	183
MlsI	TGGCCA	2 cut(s)	417, 968
MluCI	AATT	6 cut(s)	28, 131, 439, 682, 792, 978
MluNI	TGGCCA	2 cut(s)	417, 968
MlyI	GAGTC	2 cut(s)	227, 761
MmeI	TCCRAC	2 cut(s)	210, 383
MnlI	CCTC	7 cut(s)	3, 330, 443, 691, 694, 964, 997
Mox20I	TGGCCA	2 cut(s)	417, 968
MroXI	GAANNNNTTC	2 cut(s)	308, 803
MscI	TGGCCA	2 cut(s)	417, 968
MseI	TTAA	5 cut(s)	59, 584, 609, 672, 707
Msp20I	TGGCCA	2 cut(s)	417, 968
MspI	CCGG	1 cut(s)	842
MspR9I	CCNGG	2 cut(s)	65, 809
MunI	CAATTG	2 cut(s)	792, 978
MvaI	CCWGG	2 cut(s)	65, 809
NdeI	CATATG	1 cut(s)	160
NdeII	GATC	2 cut(s)	276, 928
NlaIII	CATG	3 cut(s)	94, 782, 941
NmuCI	GTSAC	2 cut(s)	566, 876
NspV	TTCGAA	1 cut(s)	852
PagI	TCATGA	2 cut(s)	90, 937
PasI	CCCWGGG	1 cut(s)	64
PdmI	GAANNNNTTC	2 cut(s)	308, 803
PfeI	GAWTC	5 cut(s)	43, 94, 854, 923, 1040
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	790, 871
PleI	GAGTC	2 cut(s)	227, 760
PpsI	GAGTC	2 cut(s)	227, 760
Psp6I	CCWGG	2 cut(s)	63, 807
PspGI	CCWGG	2 cut(s)	63, 807
PstNI	CAGNNNCTG	1 cut(s)	926
PsuI	RGATCY	1 cut(s)	276
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
SaqAI	TTAA	5 cut(s)	59, 584, 609, 672, 707
SatI	GCNGC	2 cut(s)	789, 870
Sau3AI	GATC	2 cut(s)	276, 928
SchI	GAGTC	2 cut(s)	227, 761
ScrFI	CCNGG	2 cut(s)	65, 809
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	8 cut(s)	78, 90, 150, 241, 357, 487, 573, 821
SfaNI	GCATC	2 cut(s)	452, 508
SfcI	CTRYAG	1 cut(s)	397
SfuI	TTCGAA	1 cut(s)	852
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
SpeI	ACTAGT	1 cut(s)	895
Sse9I	AATT	6 cut(s)	28, 131, 439, 682, 792, 978
SsiI	CCGC	1 cut(s)	869
SspMI	CTAG	6 cut(s)	491, 572, 693, 896, 1001, 1054
StyD4I	CCNGG	2 cut(s)	63, 807
StyI	CCWWGG	1 cut(s)	430
TaqI	TCGA	2 cut(s)	460, 852
TasI	AATT	6 cut(s)	28, 131, 439, 682, 792, 978
TatI	WGTACW	1 cut(s)	556
TauI	GCSGC	1 cut(s)	872
TfiI	GAWTC	5 cut(s)	43, 94, 854, 923, 1040
Tru1I	TTAA	5 cut(s)	59, 584, 609, 672, 707
Tru9I	TTAA	5 cut(s)	59, 584, 609, 672, 707
TscAI	CASTG	1 cut(s)	879
TseFI	GTSAC	2 cut(s)	566, 876
TseI	GCWGC	1 cut(s)	788
Tsp45I	GTSAC	2 cut(s)	566, 876
TspDTI	ATGAA	4 cut(s)	102, 107, 147, 177
TspGWI	ACGGA	1 cut(s)	603
TspRI	CASTG	1 cut(s)	879
Van91I	CCANNNNNTGG	1 cut(s)	229
XapI	RAATTY	2 cut(s)	131, 682
XmnI	GAANNNNTTC	2 cut(s)	308, 803
XspI	CTAG	6 cut(s)	491, 572, 693, 896, 1001, 1054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.