Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020948.1

Orthogroup ID

OG0014940

Physical Location & Seq

Genomic Coordinates Reverse (-)

26463 .. 28387

Gene Structure 1925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020948.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atgatgggtaattgggagcaaaagattctaaaaagtgagttaacccaggggaaggagctggcagagaagctcatgaatcatctccaccactcttcatcatctcaagaaggagaattcttgatttcaaagctactatcttcatatgaaaaggtactctctgtgctcacaagggatgttggctctgaaggagagtccaagcaaatccaagtgttggactcaccttgttcatttgggaatagtagtagcccattgagtgagatctctgaccacgattgcaagaacaagaatgtcttcaagaaacggaaaataatgcccaagaggactgcagaagtgaaggtttgctctggaacaggacaagatggctctcttgatgatggctatagttggagaaaatatggccaaaaggatatccttggtgctaattaccctagaggctactatcgatgcacacatagaaacacacaaggttgcctagccacaaagcaagttcaaaaatcagatgcagacccaacaatctttatggtaacttatacaggagaacatacttgtcacctagtcgctcagttaaacggaaagcagaatgtttctcttaaacaagaagcaggaacaccgagacagacaccagaaaaatcattcagttttgggcttagagtaaaaactgagaatttggacactaggggggagggaaaggagatatttccatcatattccttctctcccacgccaatagagtctgaaaacaatgtggtggaagaccttgtttttgctgcaactgagaacgatttcctgggtggtagctacgctcaaacattcgggtctccggcaacattcgaatcagactactttgcggcagtgtcaccatgccactttgtactagtaggcaatgatgtgcaaacttcagattctgatctcactcatgagatactatcggcctcaacttctgtggccaactcaccaattggggatttcgatttctcactagaggatttggatttttacccatttgaaaacaacccagaatctacttttccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

344

Amino Acids

38.09

Weight (kDa)

5.13

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46400
fragaria_vesca	FvH4_7g16150
malus_domestica	MD01G1078000.v1.1 MD07G1146900.v1.1
prunus_persica	Prupe.2G185100_v2.0.a1
pyrus_communis	pycom07g14630
rosa_chinensis	RchiOBHm_Chr1g0359091
rosa_laevigata	RLG00000027900
rosa_multiflora	Rmu_sc0020948.1_g000005
rosa_roxburghii	Rroxscaffold_4G00297350
rosa_rugosa	Rorug01G0267800
rosa_samantha	Rh1AG281300 Rh1BG248200 Rh1CG265800 Rh1DG276700
rosa_wichuraiana	Rw1G025020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	211
AciI	CCGC	1 cut(s)	848
AcoI	YGGCCR	2 cut(s)	397, 945
AcsI	RAATTY	2 cut(s)	113, 664
AcuI	CTGAAG	2 cut(s)	204, 882
AfaI	GTAC	2 cut(s)	153, 873
AfiI	CCNNNNNNNGG	2 cut(s)	52, 211
AgsI	TTSAA	4 cut(s)	126, 295, 491, 1007
AhlI	ACTAGT	1 cut(s)	874
AjnI	CCWGG	2 cut(s)	45, 786
AluBI	AGCT	4 cut(s)	58, 70, 130, 798
AluI	AGCT	4 cut(s)	58, 70, 130, 798
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	2 cut(s)	607, 822
AlwNI	CAGNNNCTG	1 cut(s)	905
AoxI	GGCC	3 cut(s)	397, 930, 945
ApeKI	GCWGC	1 cut(s)	767
ApoI	RAATTY	2 cut(s)	113, 664
ArsI	GACNNNNNNTTYG	2 cut(s)	746, 778
Asp700I	GAANNNNTTC	2 cut(s)	290, 782
AsuHPI	GGTGA	4 cut(s)	210, 542, 849, 945
AsuII	TTCGAA	1 cut(s)	831
BalI	TGGCCA	2 cut(s)	399, 947
BbsI	GAAGAC	2 cut(s)	283, 759
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	754
BccI	CCATC	3 cut(s)	353, 368, 709
BciT130I	CCWGG	2 cut(s)	47, 788
BcoDI	GTCTC	2 cut(s)	607, 822
BcuI	ACTAGT	1 cut(s)	874
BfaI	CTAG	7 cut(s)	429, 473, 554, 675, 875, 980, 1033
BfmI	CTRYAG	2 cut(s)	324, 379
BglII	AGATCT	1 cut(s)	258
BisI	GCNGC	2 cut(s)	768, 849
BlsI	GCNGC	2 cut(s)	769, 850
Bme1390I	CCNGG	2 cut(s)	47, 788
BmrFI	CCNGG	2 cut(s)	47, 788
BmsI	GCATC	2 cut(s)	434, 490
BpiI	GAAGAC	2 cut(s)	283, 759
Bpu14I	TTCGAA	1 cut(s)	831
BpuEI	CTTGAG	1 cut(s)	87
Bsa29I	ATCGAT	1 cut(s)	442
BsaBI	GATNNNNATC	1 cut(s)	906
BsaI	GGTCTC	1 cut(s)	822
BsaJI	CCNNGG	4 cut(s)	45, 46, 412, 787
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 211
Bse3DI	GCAATG	1 cut(s)	889
Bse8I	GATNNNNATC	1 cut(s)	906
BseBI	CCWGG	2 cut(s)	47, 788
BseCI	ATCGAT	1 cut(s)	442
BseDI	CCNNGG	4 cut(s)	45, 46, 412, 787
BseGI	GGATG	1 cut(s)	178
BseJI	GATNNNNATC	1 cut(s)	906
BseLI	CCNNNNNNNGG	2 cut(s)	52, 211
BseMI	GCAATG	1 cut(s)	889
BseMII	CTCAG	3 cut(s)	575, 651, 765
BseXI	GCAGC	1 cut(s)	754
BshFI	GGCC	3 cut(s)	399, 932, 947
BshVI	ATCGAT	1 cut(s)	442
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	821
BslI	CCNNNNNNNGG	2 cut(s)	52, 211
BsmAI	GTCTC	2 cut(s)	607, 822
BsnI	GGCC	3 cut(s)	399, 932, 947
Bso31I	GGTCTC	1 cut(s)	822
Bsp119I	TTCGAA	1 cut(s)	831
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	258, 907
BspACI	CCGC	1 cut(s)	848
BspANI	GGCC	3 cut(s)	399, 932, 947
BspCNI	CTCAG	3 cut(s)	574, 652, 766
BspDI	ATCGAT	1 cut(s)	442
BspHI	TCATGA	2 cut(s)	72, 916
BspMAI	CTGCAG	1 cut(s)	328
BspT104I	TTCGAA	1 cut(s)	831
BspTNI	GGTCTC	1 cut(s)	822
BsrDI	GCAATG	1 cut(s)	889
BssECI	CCNNGG	4 cut(s)	45, 46, 412, 787
BssMI	GATC	2 cut(s)	258, 907
BssT1I	CCWWGG	1 cut(s)	412
Bst2UI	CCWGG	2 cut(s)	47, 788
Bst6I	CTCTTC	1 cut(s)	97
BstBI	TTCGAA	1 cut(s)	831
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	4 cut(s)	561, 647, 660, 774
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	2 cut(s)	261, 910
BstMAI	GTCTC	2 cut(s)	607, 822
BstMBI	GATC	2 cut(s)	258, 907
BstNI	CCWGG	2 cut(s)	47, 788
BstSCI	CCNGG	2 cut(s)	45, 786
BstSFI	CTRYAG	2 cut(s)	324, 379
BstV1I	GCAGC	1 cut(s)	754
BstV2I	GAAGAC	2 cut(s)	283, 759
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
Bsu15I	ATCGAT	1 cut(s)	442
BsuRI	GGCC	3 cut(s)	399, 932, 947
BsuTUI	ATCGAT	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	858
BtsIMutI	CAGTG	1 cut(s)	858
Cac8I	GCNNGC	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	905
CciI	TCATGA	2 cut(s)	72, 916
ClaI	ATCGAT	1 cut(s)	442
Csp6I	GTAC	2 cut(s)	152, 872
CspCI	CAANNNNNGTGG	2 cut(s)	924, 959
CviAII	CATG	3 cut(s)	73, 861, 917
CviQI	GTAC	2 cut(s)	152, 872
DdeI	CTNAG	4 cut(s)	561, 647, 660, 774
DpnI	GATC	2 cut(s)	260, 909
DpnII	GATC	2 cut(s)	258, 907
EaeI	YGGCCR	2 cut(s)	397, 945
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	412
Eco31I	GGTCTC	1 cut(s)	822
Eco32I	GATATC	1 cut(s)	409
Eco57I	CTGAAG	2 cut(s)	204, 882
EcoRI	GAATTC	1 cut(s)	113
EcoRII	CCWGG	2 cut(s)	45, 786
EcoRV	GATATC	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	3 cut(s)	76, 864, 920
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FatI	CATG	3 cut(s)	72, 860, 916
FauNDI	CATATG	1 cut(s)	142
Fnu4HI	GCNGC	2 cut(s)	768, 849
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	2 cut(s)	768, 849
FspBI	CTAG	7 cut(s)	429, 473, 554, 675, 875, 980, 1033
GluI	GCNGC	2 cut(s)	768, 849
HaeIII	GGCC	3 cut(s)	399, 932, 947
HapII	CCGG	1 cut(s)	821
Hin1II	CATG	3 cut(s)	76, 864, 920
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	8 cut(s)	25, 76, 191, 215, 731, 833, 902, 1019
HpaI	GTTAAC	1 cut(s)	42
HpaII	CCGG	1 cut(s)	821
HphI	GGTGA	4 cut(s)	210, 542, 849, 945
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	7 cut(s)	184, 265, 499, 736, 838, 901, 907
Hpy188III	TCNNGA	7 cut(s)	73, 104, 118, 295, 345, 368, 917
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	5 cut(s)	46, 101, 179, 328, 721
HpyCH4V	TGCA	6 cut(s)	276, 326, 447, 503, 770, 892
HpyF3I	CTNAG	4 cut(s)	561, 647, 660, 774
Hsp92II	CATG	3 cut(s)	76, 864, 920
KspAI	GTTAAC	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	258, 907
LmnI	GCTCC	2 cut(s)	16, 55
Lsp1109I	GCAGC	1 cut(s)	754
LweI	GCATC	2 cut(s)	434, 490
MaeI	CTAG	7 cut(s)	429, 473, 554, 675, 875, 980, 1033
MaeIII	GTNAC	3 cut(s)	523, 548, 855
MalI	GATC	2 cut(s)	260, 909
MboI	GATC	2 cut(s)	258, 907
MboII	GAAGA	4 cut(s)	84, 129, 283, 764
MfeI	CAATTG	1 cut(s)	957
MflI	RGATCY	1 cut(s)	258
MhlI	GDGCHC	1 cut(s)	165
MlsI	TGGCCA	2 cut(s)	399, 947
MluCI	AATT	5 cut(s)	10, 113, 421, 664, 957
MluNI	TGGCCA	2 cut(s)	399, 947
MlyI	GAGTC	3 cut(s)	200, 209, 740
MmeI	TCCRAC	2 cut(s)	192, 365
MnlI	CCTC	5 cut(s)	312, 425, 676, 943, 976
Mox20I	TGGCCA	2 cut(s)	399, 947
MroXI	GAANNNNTTC	2 cut(s)	290, 782
MscI	TGGCCA	2 cut(s)	399, 947
MseI	TTAA	3 cut(s)	41, 566, 591
Msp20I	TGGCCA	2 cut(s)	399, 947
MspI	CCGG	1 cut(s)	821
MspR9I	CCNGG	2 cut(s)	47, 788
MunI	CAATTG	1 cut(s)	957
MvaI	CCWGG	2 cut(s)	47, 788
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	2 cut(s)	258, 907
NlaIII	CATG	3 cut(s)	76, 864, 920
NmuCI	GTSAC	2 cut(s)	548, 855
NspV	TTCGAA	1 cut(s)	831
PagI	TCATGA	2 cut(s)	72, 916
PasI	CCCWGGG	1 cut(s)	46
PdmI	GAANNNNTTC	2 cut(s)	290, 782
PfeI	GAWTC	5 cut(s)	25, 76, 833, 902, 1019
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	769, 850
PleI	GAGTC	3 cut(s)	199, 209, 739
PpsI	GAGTC	3 cut(s)	199, 209, 739
Psp6I	CCWGG	2 cut(s)	45, 786
PspGI	CCWGG	2 cut(s)	45, 786
PstI	CTGCAG	1 cut(s)	328
PstNI	CAGNNNCTG	1 cut(s)	905
PsuI	RGATCY	1 cut(s)	258
RsaI	GTAC	2 cut(s)	153, 873
RsaNI	GTAC	2 cut(s)	152, 872
SaqAI	TTAA	3 cut(s)	41, 566, 591
SatI	GCNGC	2 cut(s)	768, 849
Sau3AI	GATC	2 cut(s)	258, 907
SchI	GAGTC	3 cut(s)	200, 209, 740
ScrFI	CCNGG	2 cut(s)	47, 788
SduI	GDGCHC	1 cut(s)	165
SfaNI	GCATC	2 cut(s)	434, 490
SfcI	CTRYAG	2 cut(s)	324, 379
SfuI	TTCGAA	1 cut(s)	831
SmlI	CTYRAG	1 cut(s)	102
SmoI	CTYRAG	1 cut(s)	102
SpeI	ACTAGT	1 cut(s)	874
Sse9I	AATT	5 cut(s)	10, 113, 421, 664, 957
SsiI	CCGC	1 cut(s)	848
SspMI	CTAG	7 cut(s)	429, 473, 554, 675, 875, 980, 1033
StyD4I	CCNGG	2 cut(s)	45, 786
StyI	CCWWGG	1 cut(s)	412
TaqI	TCGA	3 cut(s)	442, 831, 969
TasI	AATT	5 cut(s)	10, 113, 421, 664, 957
TatI	WGTACW	1 cut(s)	871
TauI	GCSGC	1 cut(s)	851
TfiI	GAWTC	5 cut(s)	25, 76, 833, 902, 1019
Tru1I	TTAA	3 cut(s)	41, 566, 591
Tru9I	TTAA	3 cut(s)	41, 566, 591
TscAI	CASTG	1 cut(s)	858
TseFI	GTSAC	2 cut(s)	548, 855
TseI	GCWGC	1 cut(s)	767
Tsp45I	GTSAC	2 cut(s)	548, 855
TspDTI	ATGAA	5 cut(s)	84, 89, 129, 159, 216
TspGWI	ACGGA	2 cut(s)	316, 585
TspRI	CASTG	1 cut(s)	858
Van91I	CCANNNNNTGG	1 cut(s)	211
XapI	RAATTY	2 cut(s)	113, 664
XmnI	GAANNNNTTC	2 cut(s)	290, 782
XspI	CTAG	7 cut(s)	429, 473, 554, 675, 875, 980, 1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.