Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0014940

Physical Location & Seq

Genomic Coordinates Reverse (-)

53069524 .. 53072660

Gene Structure 3137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG265800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGTACTCCTTACTTACCCAAATTAGTAATGTTTGAAATTGGTCGATCTGGTTCTGATTGTTTTGGATTTTTTGGATTATGCAGGAAAACAATGCCCAAGAGGACTGCCGAAGTGAAGGTTTGCTCTGGAACAGGACAAGATGGCTCTCTTGATGATGGCTATAGTTGGAGAAAATATGGCCAAAAGGATATCCTTGGTGCTAATTACCCAAGAGGCTACTATCGATGCACACATAGAAACACACAAGGTTGCCTAGCCACAAAGCAAGTTCAAAAATCAGATGCAGACCCAACAATCTTTATGGTAACTTATACAGGAGAACATACTTGTCACCTAGTCGCTCAGTTAAACGGAAAGCAGAATGTTTCTCTTAAACAAGAAGCAGGAACACCGAGACAGACACCAGAAAAATCATTCAGTTTTGGGCTTAGAGTTAAAACTGAGAATTTGGACACTAGGGGGGAGGGAAAGGAGATATTTCCATCATTTTCCTTCCCTCCCACGCCAATAGAGTCTGAAAACAATGTGGTGGAAGACCATGTTTTCGCTGCAACTGAGAACGATTTCCTGGGTGGTAGCTACGCTCAAACATTCGGGTCTCCGGCAACATTCGAATCAGACTACTTTGCGGCAGTGTCACCGTGCCACTTTGTACTAGGCAATGATGTGCAAACTTCAGATTCTGATCTCACTCATGAGATACTATCGGCCTCAACTTCTGTGGCCAACTCACCAATTGGGGATTTCGATTTCTCACTAGAGGATTTGGATTTTTACCCATTTGAAAACAACCCAGAATCTACTTTTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

271

Amino Acids

29.9

Weight (kDa)

4.92

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	52 - 112	1.2e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46400
fragaria_vesca	FvH4_7g16150
malus_domestica	MD01G1078000.v1.1 MD07G1146900.v1.1
prunus_persica	Prupe.2G185100_v2.0.a1
pyrus_communis	pycom07g14630
rosa_chinensis	RchiOBHm_Chr1g0359091
rosa_laevigata	RLG00000027900
rosa_multiflora	Rmu_sc0020948.1_g000005
rosa_roxburghii	Rroxscaffold_4G00297350
rosa_rugosa	Rorug01G0267800
rosa_samantha	Rh1AG281300 Rh1BG248200 Rh1CG265800 Rh1DG276700
rosa_wichuraiana	Rw1G025020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	632
AcoI	YGGCCR	2 cut(s)	181, 726
AcsI	RAATTY	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	663
AfaI	GTAC	2 cut(s)	7, 657
AgsI	TTSAA	3 cut(s)	38, 275, 788
AjnI	CCWGG	1 cut(s)	570
AluBI	AGCT	1 cut(s)	582
AluI	AGCT	1 cut(s)	582
Alw26I	GTCTC	2 cut(s)	391, 606
AlwNI	CAGNNNCTG	1 cut(s)	686
AoxI	GGCC	3 cut(s)	181, 711, 726
ApeKI	GCWGC	1 cut(s)	551
ApoI	RAATTY	1 cut(s)	448
ArsI	GACNNNNNNTTYG	2 cut(s)	530, 562
Asp700I	GAANNNNTTC	1 cut(s)	566
AsuHPI	GGTGA	3 cut(s)	326, 633, 726
AsuII	TTCGAA	1 cut(s)	615
BalI	TGGCCA	2 cut(s)	183, 728
BbsI	GAAGAC	1 cut(s)	543
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	3 cut(s)	137, 152, 493
BciT130I	CCWGG	1 cut(s)	572
BcoDI	GTCTC	2 cut(s)	391, 606
BfaI	CTAG	6 cut(s)	257, 338, 459, 659, 761, 814
BfmI	CTRYAG	1 cut(s)	163
BisI	GCNGC	2 cut(s)	552, 633
BlsI	GCNGC	2 cut(s)	553, 634
Bme1390I	CCNGG	1 cut(s)	572
BmrFI	CCNGG	1 cut(s)	572
BmsI	GCATC	2 cut(s)	218, 274
BpiI	GAAGAC	1 cut(s)	543
Bpu14I	TTCGAA	1 cut(s)	615
Bsa29I	ATCGAT	1 cut(s)	226
BsaBI	GATNNNNATC	1 cut(s)	687
BsaI	GGTCTC	1 cut(s)	606
BsaJI	CCNNGG	2 cut(s)	196, 571
Bse3DI	GCAATG	1 cut(s)	670
Bse8I	GATNNNNATC	1 cut(s)	687
BseBI	CCWGG	1 cut(s)	572
BseCI	ATCGAT	1 cut(s)	226
BseDI	CCNNGG	2 cut(s)	196, 571
BseJI	GATNNNNATC	1 cut(s)	687
BseMI	GCAATG	1 cut(s)	670
BseMII	CTCAG	3 cut(s)	359, 435, 549
BseXI	GCAGC	1 cut(s)	538
BshFI	GGCC	3 cut(s)	183, 713, 728
BshVI	ATCGAT	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	605
BsmAI	GTCTC	2 cut(s)	391, 606
BsnI	GGCC	3 cut(s)	183, 713, 728
Bso31I	GGTCTC	1 cut(s)	606
Bsp119I	TTCGAA	1 cut(s)	615
Bsp143I	GATC	2 cut(s)	47, 688
BspACI	CCGC	1 cut(s)	632
BspANI	GGCC	3 cut(s)	183, 713, 728
BspCNI	CTCAG	3 cut(s)	358, 436, 550
BspDI	ATCGAT	1 cut(s)	226
BspHI	TCATGA	1 cut(s)	697
BspT104I	TTCGAA	1 cut(s)	615
BspTNI	GGTCTC	1 cut(s)	606
BsrDI	GCAATG	1 cut(s)	670
BssECI	CCNNGG	2 cut(s)	196, 571
BssMI	GATC	2 cut(s)	47, 688
BssT1I	CCWWGG	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	1 cut(s)	645
BstBI	TTCGAA	1 cut(s)	615
BstDEI	CTNAG	4 cut(s)	345, 431, 444, 558
BstKTI	GATC	2 cut(s)	50, 691
BstMAI	GTCTC	2 cut(s)	391, 606
BstMBI	GATC	2 cut(s)	47, 688
BstNI	CCWGG	1 cut(s)	572
BstSCI	CCNGG	1 cut(s)	570
BstSFI	CTRYAG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	538
BstV2I	GAAGAC	1 cut(s)	543
Bsu15I	ATCGAT	1 cut(s)	226
BsuRI	GGCC	3 cut(s)	183, 713, 728
BsuTUI	ATCGAT	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	1 cut(s)	642
CaiI	CAGNNNCTG	1 cut(s)	686
CciI	TCATGA	1 cut(s)	697
ClaI	ATCGAT	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	6, 656
CspCI	CAANNNNNGTGG	2 cut(s)	705, 740
CviAII	CATG	2 cut(s)	542, 698
CviJI	RGCY	9 cut(s)	147, 162, 183, 219, 260, 430, 582, 713, 728
CviKI_1	RGCY	9 cut(s)	147, 162, 183, 219, 260, 430, 582, 713, 728
CviQI	GTAC	2 cut(s)	6, 656
DdeI	CTNAG	4 cut(s)	345, 431, 444, 558
DpnI	GATC	2 cut(s)	49, 690
DpnII	GATC	2 cut(s)	47, 688
EaeI	YGGCCR	2 cut(s)	181, 726
Eco130I	CCWWGG	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	606
Eco32I	GATATC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	663
EcoRII	CCWGG	1 cut(s)	570
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	196
FaeI	CATG	2 cut(s)	545, 701
FaiI	YATR	9 cut(s)	82, 165, 180, 237, 305, 315, 327, 543, 699
FatI	CATG	2 cut(s)	541, 697
Fnu4HI	GCNGC	2 cut(s)	552, 633
Fsp4HI	GCNGC	2 cut(s)	552, 633
FspBI	CTAG	6 cut(s)	257, 338, 459, 659, 761, 814
GluI	GCNGC	2 cut(s)	552, 633
HaeIII	GGCC	3 cut(s)	183, 713, 728
HapII	CCGG	1 cut(s)	605
Hin1II	CATG	2 cut(s)	545, 701
HinfI	GANTC	4 cut(s)	515, 617, 683, 800
HpaII	CCGG	1 cut(s)	605
HphI	GGTGA	3 cut(s)	326, 633, 726
Hpy188I	TCNGA	6 cut(s)	58, 283, 520, 622, 682, 688
Hpy188III	TCNNGA	3 cut(s)	129, 152, 698
HpyAV	CCTTC	2 cut(s)	112, 505
HpyCH4III	ACNGT	1 cut(s)	645
HpyCH4V	TGCA	5 cut(s)	84, 231, 287, 554, 673
HpyF3I	CTNAG	4 cut(s)	345, 431, 444, 558
Hsp92II	CATG	2 cut(s)	545, 701
Kzo9I	GATC	2 cut(s)	47, 688
Lsp1109I	GCAGC	1 cut(s)	538
LweI	GCATC	2 cut(s)	218, 274
MaeI	CTAG	6 cut(s)	257, 338, 459, 659, 761, 814
MaeIII	GTNAC	3 cut(s)	307, 332, 639
MalI	GATC	2 cut(s)	49, 690
MboI	GATC	2 cut(s)	47, 688
MboII	GAAGA	1 cut(s)	548
MfeI	CAATTG	1 cut(s)	738
MlsI	TGGCCA	2 cut(s)	183, 728
MluCI	AATT	5 cut(s)	23, 39, 205, 448, 738
MluNI	TGGCCA	2 cut(s)	183, 728
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	6 cut(s)	96, 209, 460, 510, 724, 757
Mox20I	TGGCCA	2 cut(s)	183, 728
MroXI	GAANNNNTTC	1 cut(s)	566
MscI	TGGCCA	2 cut(s)	183, 728
MseI	TTAA	3 cut(s)	350, 375, 438
Msp20I	TGGCCA	2 cut(s)	183, 728
MspI	CCGG	1 cut(s)	605
MspR9I	CCNGG	1 cut(s)	572
MunI	CAATTG	1 cut(s)	738
MvaI	CCWGG	1 cut(s)	572
NdeII	GATC	2 cut(s)	47, 688
NlaIII	CATG	2 cut(s)	545, 701
NmuCI	GTSAC	2 cut(s)	332, 639
NspV	TTCGAA	1 cut(s)	615
PagI	TCATGA	1 cut(s)	697
PdmI	GAANNNNTTC	1 cut(s)	566
PfeI	GAWTC	3 cut(s)	617, 683, 800
PkrI	GCNGC	2 cut(s)	553, 634
PleI	GAGTC	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
PstNI	CAGNNNCTG	1 cut(s)	686
RsaI	GTAC	2 cut(s)	7, 657
RsaNI	GTAC	2 cut(s)	6, 656
SaqAI	TTAA	3 cut(s)	350, 375, 438
SatI	GCNGC	2 cut(s)	552, 633
Sau3AI	GATC	2 cut(s)	47, 688
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	1 cut(s)	572
SetI	ASST	4 cut(s)	123, 253, 339, 584
SfaNI	GCATC	2 cut(s)	218, 274
SfcI	CTRYAG	1 cut(s)	163
SfuI	TTCGAA	1 cut(s)	615
Sse9I	AATT	5 cut(s)	23, 39, 205, 448, 738
SsiI	CCGC	1 cut(s)	632
SspMI	CTAG	6 cut(s)	257, 338, 459, 659, 761, 814
StyD4I	CCNGG	1 cut(s)	570
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	1 cut(s)	645
TaqI	TCGA	4 cut(s)	46, 226, 615, 750
TasI	AATT	5 cut(s)	23, 39, 205, 448, 738
TatI	WGTACW	1 cut(s)	655
TauI	GCSGC	1 cut(s)	635
TfiI	GAWTC	3 cut(s)	617, 683, 800
Tru1I	TTAA	3 cut(s)	350, 375, 438
Tru9I	TTAA	3 cut(s)	350, 375, 438
TscAI	CASTG	1 cut(s)	642
TseFI	GTSAC	2 cut(s)	332, 639
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	2 cut(s)	332, 639
TspGWI	ACGGA	1 cut(s)	369
TspRI	CASTG	1 cut(s)	642
XapI	RAATTY	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	566
XspI	CTAG	6 cut(s)	257, 338, 459, 659, 761, 814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.