Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0014940

Physical Location & Seq

Genomic Coordinates Forward (+)

16562347 .. 16564304

Gene Structure 1958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027900

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGAGAAGAGGAAGAGTATGATGGGTAATTGGGACCAAAAGATTCTAAAACATGAGTTAACCCAGGGGAAGGAGCTGGCAGAGAAGCTCATGAACCATCTCCACCACTCTTCATCATCCCAAGAAGGAGAATTCTTGATTTCAAAGCTACTATCTTCATATGAAAAGGCACTCTCTGTGCTCACAAGGGATGTTGGTTCTGAAGGAGAGTCTAAGCAAATCCAAGTGTTGGACTCAACTTGTTCATTTGGGACTAGTAGTAGCCCATTGAGTGAGATCTCTGACCAAGATTGCAAGAACAAGAATGTCTTCAAGAAAAGGAAAACAATGCCCAAGTGGACTGAAGAACTGAAGGTTTGCTCTGGAACAGGACAAGATGGCTCTCTTGATGATGGCTATAGTTGGAGAAAATATGGCCAAAAGGATATCCTTGGTGCTAATTACCCAAGAGGCTACTATCGATGCACACATAGAAACACACAAGGCTGTGTAGCCACAAAGCAAGTTCAAAAATCAGATGCAGACCCAACAATCTTTATGGTAACTTATACAGGAGTACATACTTGTCACCTAGTCGCTCAGTTAAACGGAAAGCAGAATGTTTCTCTTAAACAAGAAGCAGGAACACCGAGACAGACTCCAGAAAAATCGTTCAGTTTCGGGCTTAGAGTTAAAACTGAGAATTTGGACACTAGGGAGGAGGGAAAGGAGATATTTCAATCATTTTCCTTCTCTCCCACGCCAATAGAGTCTGAAAACAATGTGGTGGAAGACCATGTTTTCGCTGCAATTGAGAACGATTTCTTGGGTGGTAGCTACGCTCAAACATTCGGGTCTCCGGCAACATTCGAATCAGACTACTTTGCGGCAGTGTCACCATGCCACTTTGGACTAGTAGGCAATGATGTGCAAACTTCAGATTCTGATCTCACTCATGAGATATTATCGGCCTCAACTTCTGTGGCCAACTCACCAATTGGGGATTTCGGTTTCTCACTAGAGGATTTGGATTTTTACTCATTTGAAAACAACCCAGAATCTACTTTTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

351

Amino Acids

38.9

Weight (kDa)

5.28

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	130 - 190	1.1e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46400
fragaria_vesca	FvH4_7g16150
malus_domestica	MD01G1078000.v1.1 MD07G1146900.v1.1
prunus_persica	Prupe.2G185100_v2.0.a1
pyrus_communis	pycom07g14630
rosa_chinensis	RchiOBHm_Chr1g0359091
rosa_laevigata	RLG00000027900
rosa_multiflora	Rmu_sc0020948.1_g000005
rosa_roxburghii	Rroxscaffold_4G00297350
rosa_rugosa	Rorug01G0267800
rosa_samantha	Rh1AG281300 Rh1BG248200 Rh1CG265800 Rh1DG276700
rosa_wichuraiana	Rw1G025020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	229
AciI	CCGC	1 cut(s)	866
AcoI	YGGCCR	2 cut(s)	415, 963
AcsI	RAATTY	2 cut(s)	131, 682
AcuI	CTGAAG	4 cut(s)	222, 363, 371, 900
AfaI	GTAC	1 cut(s)	558
AfiI	CCNNNNNNNGG	2 cut(s)	70, 229
AgsI	TTSAA	5 cut(s)	144, 313, 509, 719, 1025
AhlI	ACTAGT	2 cut(s)	254, 892
AjnI	CCWGG	1 cut(s)	63
AjuI	GAANNNNNNNTTGG	2 cut(s)	788, 820
AluBI	AGCT	4 cut(s)	76, 88, 148, 816
AluI	AGCT	4 cut(s)	76, 88, 148, 816
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	2 cut(s)	625, 840
AlwNI	CAGNNNCTG	1 cut(s)	923
AoxI	GGCC	3 cut(s)	415, 948, 963
ApeKI	GCWGC	1 cut(s)	785
ApoI	RAATTY	2 cut(s)	131, 682
ArsI	GACNNNNNNTTYG	2 cut(s)	764, 796
Asp700I	GAANNNNTTC	2 cut(s)	308, 800
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	3 cut(s)	560, 867, 963
AsuII	TTCGAA	1 cut(s)	849
AvaII	GGWCC	1 cut(s)	34
BalI	TGGCCA	2 cut(s)	417, 965
BbsI	GAAGAC	2 cut(s)	301, 777
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	772
BccI	CCATC	4 cut(s)	16, 105, 371, 386
BciT130I	CCWGG	1 cut(s)	65
BcoDI	GTCTC	2 cut(s)	625, 840
BcuI	ACTAGT	2 cut(s)	254, 892
BfaI	CTAG	6 cut(s)	255, 572, 693, 893, 998, 1051
BfmI	CTRYAG	1 cut(s)	397
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	2 cut(s)	786, 867
BlsI	GCNGC	2 cut(s)	787, 868
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	2 cut(s)	452, 508
BpiI	GAAGAC	2 cut(s)	301, 777
BplI	GAGNNNNNCTC	2 cut(s)	622, 654
BpmI	CTGGAG	1 cut(s)	624
Bpu14I	TTCGAA	1 cut(s)	849
Bsa29I	ATCGAT	1 cut(s)	460
BsaBI	GATNNNNATC	1 cut(s)	924
BsaI	GGTCTC	1 cut(s)	840
BsaJI	CCNNGG	3 cut(s)	63, 64, 430
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 229
Bse3DI	GCAATG	1 cut(s)	907
Bse8I	GATNNNNATC	1 cut(s)	924
BseBI	CCWGG	1 cut(s)	65
BseCI	ATCGAT	1 cut(s)	460
BseDI	CCNNGG	3 cut(s)	63, 64, 430
BseGI	GGATG	2 cut(s)	116, 196
BseJI	GATNNNNATC	1 cut(s)	924
BseLI	CCNNNNNNNGG	2 cut(s)	70, 229
BseMI	GCAATG	1 cut(s)	907
BseMII	CTCAG	2 cut(s)	593, 669
BseRI	GAGGAG	1 cut(s)	713
BseXI	GCAGC	1 cut(s)	772
BshFI	GGCC	3 cut(s)	417, 950, 965
BshVI	ATCGAT	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	839
BslFI	GGGAC	2 cut(s)	47, 265
BslI	CCNNNNNNNGG	2 cut(s)	70, 229
BsmAI	GTCTC	2 cut(s)	625, 840
BsmFI	GGGAC	2 cut(s)	47, 265
BsnI	GGCC	3 cut(s)	417, 950, 965
Bso31I	GGTCTC	1 cut(s)	840
Bsp119I	TTCGAA	1 cut(s)	849
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	2 cut(s)	276, 925
BspACI	CCGC	1 cut(s)	866
BspANI	GGCC	3 cut(s)	417, 950, 965
BspCNI	CTCAG	2 cut(s)	592, 670
BspDI	ATCGAT	1 cut(s)	460
BspHI	TCATGA	2 cut(s)	90, 934
BspLI	GGNNCC	1 cut(s)	35
BspT104I	TTCGAA	1 cut(s)	849
BspTNI	GGTCTC	1 cut(s)	840
BsrDI	GCAATG	1 cut(s)	907
BssECI	CCNNGG	3 cut(s)	63, 64, 430
BssMI	GATC	2 cut(s)	276, 925
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	65
Bst6I	CTCTTC	3 cut(s)	2, 8, 115
BstBI	TTCGAA	1 cut(s)	849
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	4 cut(s)	213, 579, 665, 678
BstF5I	GGATG	2 cut(s)	116, 196
BstKTI	GATC	2 cut(s)	279, 928
BstMAI	GTCTC	2 cut(s)	625, 840
BstMBI	GATC	2 cut(s)	276, 925
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstSFI	CTRYAG	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	772
BstV2I	GAAGAC	2 cut(s)	301, 777
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
Bsu15I	ATCGAT	1 cut(s)	460
BsuRI	GGCC	3 cut(s)	417, 950, 965
BsuTUI	ATCGAT	1 cut(s)	460
BtsCI	GGATG	2 cut(s)	116, 196
BtsI	GCAGTG	1 cut(s)	876
BtsIMutI	CAGTG	1 cut(s)	876
Cac8I	GCNNGC	1 cut(s)	78
CaiI	CAGNNNCTG	1 cut(s)	923
CciI	TCATGA	2 cut(s)	90, 934
Cfr13I	GGNCC	1 cut(s)	34
ClaI	ATCGAT	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	557
CspCI	CAANNNNNGTGG	2 cut(s)	942, 977
CviAII	CATG	5 cut(s)	53, 91, 776, 879, 935
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	4 cut(s)	213, 579, 665, 678
DpnI	GATC	2 cut(s)	278, 927
DpnII	GATC	2 cut(s)	276, 925
EaeI	YGGCCR	2 cut(s)	415, 963
Eam1104I	CTCTTC	3 cut(s)	2, 8, 115
EarI	CTCTTC	3 cut(s)	2, 8, 115
Eco130I	CCWWGG	1 cut(s)	430
Eco31I	GGTCTC	1 cut(s)	840
Eco32I	GATATC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	4 cut(s)	222, 363, 371, 900
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	63
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	5 cut(s)	56, 94, 779, 882, 938
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FaqI	GGGAC	2 cut(s)	47, 265
FatI	CATG	5 cut(s)	52, 90, 775, 878, 934
FauNDI	CATATG	1 cut(s)	160
Fnu4HI	GCNGC	2 cut(s)	786, 867
FokI	GGATG	2 cut(s)	103, 203
Fsp4HI	GCNGC	2 cut(s)	786, 867
FspBI	CTAG	6 cut(s)	255, 572, 693, 893, 998, 1051
GluI	GCNGC	2 cut(s)	786, 867
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	3 cut(s)	417, 950, 965
HapII	CCGG	1 cut(s)	839
Hin1II	CATG	5 cut(s)	56, 94, 779, 882, 938
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HinfI	GANTC	8 cut(s)	43, 209, 233, 637, 749, 851, 920, 1037
HpaI	GTTAAC	1 cut(s)	60
HpaII	CCGG	1 cut(s)	839
HphI	GGTGA	3 cut(s)	560, 867, 963
Hpy166II	GTNNAC	2 cut(s)	60, 339
Hpy188I	TCNGA	7 cut(s)	202, 283, 517, 754, 856, 919, 925
Hpy188III	TCNNGA	7 cut(s)	91, 136, 313, 363, 386, 641, 935
Hpy8I	GTNNAC	2 cut(s)	60, 339
HpyAV	CCTTC	5 cut(s)	64, 119, 197, 346, 739
HpyCH4V	TGCA	5 cut(s)	294, 465, 521, 788, 910
HpyF3I	CTNAG	4 cut(s)	213, 579, 665, 678
Hsp92II	CATG	5 cut(s)	56, 94, 779, 882, 938
KspAI	GTTAAC	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	276, 925
LmnI	GCTCC	1 cut(s)	73
Lsp1109I	GCAGC	1 cut(s)	772
LweI	GCATC	2 cut(s)	452, 508
MaeI	CTAG	6 cut(s)	255, 572, 693, 893, 998, 1051
MaeIII	GTNAC	3 cut(s)	541, 566, 873
MalI	GATC	2 cut(s)	278, 927
MboI	GATC	2 cut(s)	276, 925
MboII	GAAGA	7 cut(s)	19, 25, 102, 147, 301, 356, 782
MfeI	CAATTG	2 cut(s)	789, 975
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	183
MlsI	TGGCCA	2 cut(s)	417, 965
MluCI	AATT	6 cut(s)	28, 131, 439, 682, 789, 975
MluNI	TGGCCA	2 cut(s)	417, 965
MlyI	GAGTC	4 cut(s)	218, 227, 631, 758
MmeI	TCCRAC	2 cut(s)	210, 383
MnlI	CCTC	6 cut(s)	3, 443, 691, 694, 961, 994
Mox20I	TGGCCA	2 cut(s)	417, 965
MroXI	GAANNNNTTC	2 cut(s)	308, 800
MscI	TGGCCA	2 cut(s)	417, 965
MseI	TTAA	4 cut(s)	59, 584, 609, 672
Msp20I	TGGCCA	2 cut(s)	417, 965
MspI	CCGG	1 cut(s)	839
MspR9I	CCNGG	1 cut(s)	65
MunI	CAATTG	2 cut(s)	789, 975
MvaI	CCWGG	1 cut(s)	65
NdeI	CATATG	1 cut(s)	160
NdeII	GATC	2 cut(s)	276, 925
NlaIII	CATG	5 cut(s)	56, 94, 779, 882, 938
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	2 cut(s)	566, 873
NspV	TTCGAA	1 cut(s)	849
PagI	TCATGA	2 cut(s)	90, 934
PasI	CCCWGGG	1 cut(s)	64
PdmI	GAANNNNTTC	2 cut(s)	308, 800
PfeI	GAWTC	4 cut(s)	43, 851, 920, 1037
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	787, 868
PleI	GAGTC	4 cut(s)	217, 227, 631, 757
PpsI	GAGTC	4 cut(s)	217, 227, 631, 757
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	923
PsuI	RGATCY	1 cut(s)	276
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
SaqAI	TTAA	4 cut(s)	59, 584, 609, 672
SatI	GCNGC	2 cut(s)	786, 867
Sau3AI	GATC	2 cut(s)	276, 925
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	4 cut(s)	218, 227, 631, 758
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	6 cut(s)	78, 90, 150, 357, 573, 818
SfaNI	GCATC	2 cut(s)	452, 508
SfcI	CTRYAG	1 cut(s)	397
SfuI	TTCGAA	1 cut(s)	849
SinI	GGWCC	1 cut(s)	34
SpeI	ACTAGT	2 cut(s)	254, 892
Sse9I	AATT	6 cut(s)	28, 131, 439, 682, 789, 975
SsiI	CCGC	1 cut(s)	866
SspMI	CTAG	6 cut(s)	255, 572, 693, 893, 998, 1051
StyD4I	CCNGG	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	430
TaqI	TCGA	2 cut(s)	460, 849
TasI	AATT	6 cut(s)	28, 131, 439, 682, 789, 975
TatI	WGTACW	1 cut(s)	556
TauI	GCSGC	1 cut(s)	869
TfiI	GAWTC	4 cut(s)	43, 851, 920, 1037
Tru1I	TTAA	4 cut(s)	59, 584, 609, 672
Tru9I	TTAA	4 cut(s)	59, 584, 609, 672
TscAI	CASTG	1 cut(s)	876
TseFI	GTSAC	2 cut(s)	566, 873
TseI	GCWGC	1 cut(s)	785
Tsp45I	GTSAC	2 cut(s)	566, 873
TspDTI	ATGAA	5 cut(s)	102, 107, 147, 177, 234
TspGWI	ACGGA	1 cut(s)	603
TspRI	CASTG	1 cut(s)	876
Van91I	CCANNNNNTGG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	2 cut(s)	131, 682
XmnI	GAANNNNTTC	2 cut(s)	308, 800
XspI	CTAG	6 cut(s)	255, 572, 693, 893, 998, 1051

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.