Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0014940

Physical Location & Seq

Genomic Coordinates Reverse (-)

21450190 .. 21453542

Gene Structure 3353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1146900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAGAAGAGGAAGAGCATGGAGTGGGAGCAGAAGAGTCTAAGCAATGAGCTAACTCAAGGGAAGGAGCTGGCGGAGCAGCTGATGAGCCACCTCCACCATTCTTCCTCACAAGAAACAAAAGACTTTCTGATTTCAAAGATACTTTTTTCATATGACAAGGCACTCTCACTGCTCACAGGCAGTGGGGATGGCTCTGACGGAGAATCCAAGCACATCGCAGCTCATGAAAGTATGTTGGAATCACCAACTTCATTTGGCAATAGTAGCCCATTGAGTGAGATCTCTGACCAAGATTGCAAGGACAAAAATGTCTTCAAAAAGAGGAAAACAATGCCCAGGTGGACTAAGGAAGTGAAGGTTTCCACTGGAACAGGGTTAGACGGGAGTCTTGATGATGGCTATAGTTGGAGAAAATATGGCCAAAAGGATATCCTTGGAACTAATCATCCAAGAGGCTACTACAGATGCACACATCGTGGCACACAGGGTTGCGTAGCGACCAAGCAAGTACAGAAATCAGATGCAGACCCAACAATCTTTGTGCTAACCTACAGGGGATTACATACTTGTAGCCAAGTCTCACGGTCAGCTAGGGTTAAAGAAGAGTTCAAAGGCAACCAAAATAAAACCCTAGAAGTCGAAAAACCGAATCAGTTTTCAACGGAGATGTCATTCAGTTTCGGAAGAGCAGGGCTTAGGGTTAAAACTGACCATTTGGACACTAGAGAGAATGATATATTTCCATCATTCTCCTTCCCTTCCACTCCGATTGAATCCGAAAATGTTGGGGACCATATTTTTAGCGCAATTATGATGGAGAGCAATTTGATGGATGACTATGCTCCGGTATTTGGATCTCCAGCAACAACATTTGAGTCGGACTACTTGACAGTGTCACCGTGCCATGTGAGCAGTTTCGGACTAGTGCATGAAGTGCAGACTTCAGAATCTGGTCTCACGGAGATAATCTCAGCTCCAACTTCAGTCACCAATTCACCAATTGGGGATTTTGACTTCTCAATTGATGATTTGGAATTTCACCCAGATTATTTTGGCTTAAAGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

357

Amino Acids

39.73

Weight (kDa)

5.48

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	132 - 191	5.3e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46400
fragaria_vesca	FvH4_7g16150
malus_domestica	MD01G1078000.v1.1 MD07G1146900.v1.1
prunus_persica	Prupe.2G185100_v2.0.a1
pyrus_communis	pycom07g14630
rosa_chinensis	RchiOBHm_Chr1g0359091
rosa_laevigata	RLG00000027900
rosa_multiflora	Rmu_sc0020948.1_g000005
rosa_roxburghii	Rroxscaffold_4G00297350
rosa_rugosa	Rorug01G0267800
rosa_samantha	Rh1AG281300 Rh1BG248200 Rh1CG265800 Rh1DG276700
rosa_wichuraiana	Rw1G025020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	311
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	1 cut(s)	865
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	1 cut(s)	1037
AcuI	CTGAAG	2 cut(s)	930, 969
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	1 cut(s)	513
AfiI	CCNNNNNNNGG	1 cut(s)	854
AgsI	TTSAA	5 cut(s)	138, 319, 613, 663, 776
AhlI	ACTAGT	1 cut(s)	925
AjnI	CCWGG	1 cut(s)	338
AloI	GAACNNNNNNTCC	2 cut(s)	433, 465
AluBI	AGCT	6 cut(s)	52, 70, 82, 224, 593, 977
AluI	AGCT	6 cut(s)	52, 70, 82, 224, 593, 977
Alw26I	GTCTC	2 cut(s)	586, 962
AlwI	GGATC	1 cut(s)	865
AlwNI	CAGNNNCTG	1 cut(s)	953
AoxI	GGCC	1 cut(s)	421
ApeKI	GCWGC	2 cut(s)	79, 221
ApoI	RAATTY	1 cut(s)	1037
AspLEI	GCGC	1 cut(s)	809
AspS9I	GGNCC	1 cut(s)	793
AsuHPI	GGTGA	5 cut(s)	237, 891, 982, 990, 1034
AvaII	GGWCC	1 cut(s)	793
BalI	TGGCCA	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	307
BbvI	GCAGC	2 cut(s)	91, 233
BccI	CCATC	5 cut(s)	185, 392, 754, 811, 826
BciT130I	CCWGG	1 cut(s)	340
BcoDI	GTCTC	2 cut(s)	586, 962
BcuI	ACTAGT	1 cut(s)	925
BfaI	CTAG	4 cut(s)	594, 635, 726, 926
BfmI	CTRYAG	3 cut(s)	403, 463, 553
BglII	AGATCT	1 cut(s)	282
BisI	GCNGC	2 cut(s)	80, 222
BlsI	GCNGC	2 cut(s)	81, 223
Bme1390I	CCNGG	1 cut(s)	340
Bme18I	GGWCC	1 cut(s)	793
BmgT120I	GGNCC	1 cut(s)	793
BmiI	GGNNCC	1 cut(s)	794
BmrFI	CCNGG	1 cut(s)	340
BmsI	GCATC	2 cut(s)	458, 514
BoxI	GACNNNNGTC	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	307
BplI	GAGNNNNNCTC	2 cut(s)	956, 988
BpmI	CTGGAG	1 cut(s)	846
Bpu10I	CCTNAGC	1 cut(s)	698
BpuEI	CTTGAG	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	962
BsaJI	CCNNGG	2 cut(s)	338, 436
BsaWI	WCCGGW	1 cut(s)	847
Bsc4I	CCNNNNNNNGG	1 cut(s)	854
Bse1I	ACTGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	340
BseDI	CCNNGG	2 cut(s)	338, 436
BseGI	GGATG	3 cut(s)	196, 448, 841
BseLI	CCNNNNNNNGG	1 cut(s)	854
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	987
BseNI	ACTGG	1 cut(s)	373
BseXI	GCAGC	2 cut(s)	91, 233
BsgI	GTGCAG	1 cut(s)	959
BshFI	GGCC	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	848
BslFI	GGGAC	1 cut(s)	806
BslI	CCNNNNNNNGG	1 cut(s)	854
BsmAI	GTCTC	2 cut(s)	586, 962
BsmFI	GGGAC	1 cut(s)	806
BsnI	GGCC	1 cut(s)	423
Bso31I	GGTCTC	1 cut(s)	962
Bsp143I	GATC	2 cut(s)	282, 857
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	423
BspCNI	CTCAG	1 cut(s)	986
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	794
BspPI	GGATC	1 cut(s)	865
BspQI	GCTCTTC	2 cut(s)	8, 682
BspTNI	GGTCTC	1 cut(s)	962
BsrDI	GCAATG	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	2 cut(s)	338, 436
BssMI	GATC	2 cut(s)	282, 857
BssT1I	CCWWGG	1 cut(s)	436
Bst2UI	CCWGG	1 cut(s)	340
Bst4CI	ACNGT	3 cut(s)	588, 895, 903
Bst6I	CTCTTC	5 cut(s)	2, 8, 29, 600, 682
BstAPI	GCANNNNNTGC	1 cut(s)	937
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	4 cut(s)	41, 348, 698, 973
BstF5I	GGATG	3 cut(s)	196, 448, 841
BstHHI	GCGC	1 cut(s)	809
BstKTI	GATC	2 cut(s)	285, 860
BstMAI	GTCTC	2 cut(s)	586, 962
BstMBI	GATC	2 cut(s)	282, 857
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 267, 912, 937
BstNI	CCWGG	1 cut(s)	340
BstPAI	GACNNNNGTC	1 cut(s)	387
BstSCI	CCNGG	1 cut(s)	338
BstSFI	CTRYAG	3 cut(s)	403, 463, 553
BstV1I	GCAGC	2 cut(s)	91, 233
BstV2I	GAAGAC	1 cut(s)	307
BstX2I	RGATCY	2 cut(s)	282, 857
BstYI	RGATCY	2 cut(s)	282, 857
BsuRI	GGCC	1 cut(s)	423
BtgZI	GCGATG	1 cut(s)	202
BtsCI	GGATG	3 cut(s)	196, 448, 841
BtsI	GCAGTG	2 cut(s)	170, 190
BtsIMutI	CAGTG	4 cut(s)	170, 190, 366, 900
Cac8I	GCNNGC	1 cut(s)	72
CaiI	CAGNNNCTG	1 cut(s)	953
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	1 cut(s)	809
Cfr13I	GGNCC	1 cut(s)	793
Csp6I	GTAC	1 cut(s)	512
CspCI	CAANNNNNGTGG	2 cut(s)	754, 789
CviAII	CATG	4 cut(s)	19, 227, 908, 932
CviQI	GTAC	1 cut(s)	512
DdeI	CTNAG	4 cut(s)	41, 348, 698, 973
DpnI	GATC	2 cut(s)	284, 859
DpnII	GATC	2 cut(s)	282, 857
DraIII	CACNNNGTG	1 cut(s)	479
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	5 cut(s)	2, 8, 29, 600, 682
EarI	CTCTTC	5 cut(s)	2, 8, 29, 600, 682
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	436
Eco31I	GGTCTC	1 cut(s)	962
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	793
Eco57I	CTGAAG	2 cut(s)	930, 969
EcoRII	CCWGG	1 cut(s)	338
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	4 cut(s)	22, 230, 911, 935
FaqI	GGGAC	1 cut(s)	806
FatI	CATG	4 cut(s)	18, 226, 907, 931
FauNDI	CATATG	1 cut(s)	154
Fnu4HI	GCNGC	2 cut(s)	80, 222
FokI	GGATG	3 cut(s)	203, 435, 848
Fsp4HI	GCNGC	2 cut(s)	80, 222
FspBI	CTAG	4 cut(s)	594, 635, 726, 926
GlaI	GCGC	1 cut(s)	808
GluI	GCNGC	2 cut(s)	80, 222
GsuI	CTGGAG	1 cut(s)	846
HaeIII	GGCC	1 cut(s)	423
HapII	CCGG	1 cut(s)	848
HhaI	GCGC	1 cut(s)	809
Hin1II	CATG	4 cut(s)	22, 230, 911, 935
Hin6I	GCGC	1 cut(s)	807
HinP1I	GCGC	1 cut(s)	807
HinfI	GANTC	8 cut(s)	37, 206, 242, 388, 652, 776, 878, 950
HpaII	CCGG	1 cut(s)	848
HphI	GGTGA	5 cut(s)	237, 891, 982, 990, 1034
Hpy166II	GTNNAC	1 cut(s)	345
Hpy188III	TCNNGA	2 cut(s)	227, 392
Hpy8I	GTNNAC	1 cut(s)	345
HpyAV	CCTTC	4 cut(s)	58, 352, 766, 771
HpyCH4III	ACNGT	3 cut(s)	588, 895, 903
HpyCH4V	TGCA	5 cut(s)	300, 471, 527, 931, 940
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 267, 912, 937
HpyF3I	CTNAG	4 cut(s)	41, 348, 698, 973
Hsp92II	CATG	4 cut(s)	22, 230, 911, 935
HspAI	GCGC	1 cut(s)	807
Kzo9I	GATC	2 cut(s)	282, 857
LguI	GCTCTTC	2 cut(s)	8, 682
LmnI	GCTCC	5 cut(s)	28, 67, 76, 850, 982
Lsp1109I	GCAGC	2 cut(s)	91, 233
LweI	GCATC	2 cut(s)	458, 514
MaeI	CTAG	4 cut(s)	594, 635, 726, 926
MaeIII	GTNAC	2 cut(s)	897, 988
MalI	GATC	2 cut(s)	284, 859
MboI	GATC	2 cut(s)	282, 857
MboII	GAAGA	7 cut(s)	19, 25, 46, 96, 307, 617, 699
MfeI	CAATTG	2 cut(s)	1002, 1023
MflI	RGATCY	2 cut(s)	282, 857
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	6 cut(s)	810, 826, 994, 1002, 1023, 1037
MluNI	TGGCCA	1 cut(s)	423
MlyI	GAGTC	3 cut(s)	46, 397, 887
MmeI	TCCRAC	4 cut(s)	219, 389, 861, 1004
MnlI	CCTC	5 cut(s)	3, 104, 118, 318, 449
Mox20I	TGGCCA	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	4 cut(s)	600, 705, 1061, 1069
Msp20I	TGGCCA	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	82
MspI	CCGG	1 cut(s)	848
MspR9I	CCNGG	1 cut(s)	340
MunI	CAATTG	2 cut(s)	1002, 1023
MvaI	CCWGG	1 cut(s)	340
MwoI	GCNNNNNNNGC	4 cut(s)	76, 267, 912, 937
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	2 cut(s)	282, 857
NlaIII	CATG	4 cut(s)	22, 230, 911, 935
NlaIV	GGNNCC	1 cut(s)	794
NmuCI	GTSAC	2 cut(s)	897, 988
PagI	TCATGA	1 cut(s)	226
PciSI	GCTCTTC	2 cut(s)	8, 682
PfeI	GAWTC	5 cut(s)	206, 242, 652, 776, 950
PflFI	GACNNNGTC	1 cut(s)	895
PkrI	GCNGC	2 cut(s)	81, 223
PleI	GAGTC	3 cut(s)	45, 396, 886
PpsI	GAGTC	3 cut(s)	45, 396, 886
PshAI	GACNNNNGTC	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	794
PspPI	GGNCC	1 cut(s)	793
PstNI	CAGNNNCTG	1 cut(s)	953
PsuI	RGATCY	2 cut(s)	282, 857
PsyI	GACNNNGTC	1 cut(s)	895
PvuII	CAGCTG	1 cut(s)	82
RsaI	GTAC	1 cut(s)	513
RsaNI	GTAC	1 cut(s)	512
SapI	GCTCTTC	2 cut(s)	8, 682
SaqAI	TTAA	4 cut(s)	600, 705, 1061, 1069
SatI	GCNGC	2 cut(s)	80, 222
Sau3AI	GATC	2 cut(s)	282, 857
Sau96I	GGNCC	1 cut(s)	793
SchI	GAGTC	3 cut(s)	46, 397, 887
ScrFI	CCNGG	1 cut(s)	340
SfaNI	GCATC	2 cut(s)	458, 514
SfcI	CTRYAG	3 cut(s)	403, 463, 553
SinI	GGWCC	1 cut(s)	793
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
SpeI	ACTAGT	1 cut(s)	925
Sse9I	AATT	6 cut(s)	810, 826, 994, 1002, 1023, 1037
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	4 cut(s)	594, 635, 726, 926
StyD4I	CCNGG	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	3 cut(s)	588, 895, 903
TaqI	TCGA	1 cut(s)	642
TasI	AATT	6 cut(s)	810, 826, 994, 1002, 1023, 1037
TatI	WGTACW	1 cut(s)	511
TfiI	GAWTC	5 cut(s)	206, 242, 652, 776, 950
Tru1I	TTAA	4 cut(s)	600, 705, 1061, 1069
Tru9I	TTAA	4 cut(s)	600, 705, 1061, 1069
TscAI	CASTG	4 cut(s)	177, 190, 373, 900
TseFI	GTSAC	2 cut(s)	897, 988
TseI	GCWGC	2 cut(s)	79, 221
Tsp45I	GTSAC	2 cut(s)	897, 988
TspDTI	ATGAA	4 cut(s)	141, 243, 243, 948
TspGWI	ACGGA	3 cut(s)	216, 680, 977
TspRI	CASTG	4 cut(s)	177, 190, 373, 900
Tth111I	GACNNNGTC	1 cut(s)	895
VpaK11BI	GGWCC	1 cut(s)	793
XapI	RAATTY	1 cut(s)	1037
XspI	CTAG	4 cut(s)	594, 635, 726, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.