AT2G46410
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009823
Physical Location & Seq
Reverse (-)
19049021 .. 19050369
1349 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G46410.1

Sequence Viewer

Length: 285 bp
ATGTTTCGTTCAGACAAGGCGGAAAAAATGGATAAACGACGACGGAGACAGAGCAAAGCCAAGGCTTCTTGTTCCGAAGAGGTGAGTAGTATCGAATGGGAAGCTGTGAAGATGTCAGAAGAAGAAGAAGATCTCATTTCTCGGATGTATAAACTCGTTGGCGACAGGTGGGAGTTGATCGCCGGAAGGATCCCGGGACGGACGCCGGAGGAGATAGAGAGATATTGGCTTATGAAACACGGCGTCGTTTTTGCCAACAGACGAAGAGACTTTTTTAGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008544 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010016 GO:0010026 GO:0010033 GO:0010061 GO:0010063 GO:0010090 GO:0010091 GO:0010103 GO:0010374 GO:0010376 GO:0010453 GO:0010455 GO:0010468 GO:0010556 GO:0010769 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0042221 GO:0042493 GO:0042659 GO:0042660 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0046677 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0060284 GO:0060429 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0090698 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:1903888 GO:1903890 GO:1905421 GO:1905423 GO:2000024 GO:2000026 GO:2000039 GO:2000067 GO:2000112 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

94

Amino Acids

11.38

Weight (kDa)

9.6

Isoelectric Point (pI)

110.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 37 - 78 8.3e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009823)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01380 AT1G01380 AT1G01380 AT2G46410 AT4G01060 AT4G01060 AT4G01060
fragaria_vesca FvH4_7g16170
malus_domestica MD07G1147100.v1.1
prunus_persica Prupe.2G185200_v2.0.a1
pyrus_communis pycom01g10670
rosa_chinensis RchiOBHm_Chr1g0359121
rosa_laevigata RLG00000027899
rosa_multiflora Rmu_sc0008475.1_g000001
rosa_roxburghii Rroxscaffold_4G00297320
rosa_rugosa Rorug01G0267900
rosa_samantha Rh1AG281600 Rh1BG248400 Rh1CG265900 Rh1DG277100
rosa_wichuraiana Rw1G025030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 20
AclWI GGATC 2 cut(s) 184, 197
AcyI GRCGYC 2 cut(s) 203, 243
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
Alw26I GTCTC 2 cut(s) 40, 261
AlwI GGATC 2 cut(s) 184, 197
Ama87I CYCGRG 1 cut(s) 193
AsuC2I CCSGG 2 cut(s) 194, 195
AsuHPI GGTGA 1 cut(s) 94
AvaI CYCGRG 1 cut(s) 193
BamHI GGATCC 1 cut(s) 189
BceAI ACGGC 1 cut(s) 256
BcnI CCSGG 2 cut(s) 194, 195
BcoDI GTCTC 2 cut(s) 40, 261
BglII AGATCT 1 cut(s) 130
Bme1390I CCNGG 2 cut(s) 194, 195
BmeT110I CYCGRG 1 cut(s) 193
BmiI GGNNCC 1 cut(s) 191
BmrFI CCNGG 2 cut(s) 194, 195
BpuMI CCSGG 2 cut(s) 194, 195
BsaHI GRCGYC 2 cut(s) 203, 243
BsaJI CCNNGG 2 cut(s) 60, 193
BseDI CCNNGG 2 cut(s) 60, 193
BseGI GGATG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 224
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 3 cut(s) 183, 194, 206
BslFI GGGAC 1 cut(s) 210
BsmAI GTCTC 2 cut(s) 40, 261
BsmFI GGGAC 1 cut(s) 210
BsoBI CYCGRG 1 cut(s) 193
Bsp143I GATC 3 cut(s) 130, 177, 189
BspACI CCGC 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 191
BspPI GGATC 2 cut(s) 184, 197
BssECI CCNNGG 2 cut(s) 60, 193
BssMI GATC 3 cut(s) 130, 177, 189
BssNI GRCGYC 2 cut(s) 203, 243
BssT1I CCWWGG 1 cut(s) 60
Bst6I CTCTTC 2 cut(s) 72, 259
BstACI GRCGYC 2 cut(s) 203, 243
BstF5I GGATG 1 cut(s) 150
BstKTI GATC 3 cut(s) 133, 180, 192
BstMAI GTCTC 2 cut(s) 40, 261
BstMBI GATC 3 cut(s) 130, 177, 189
BstSCI CCNGG 2 cut(s) 192, 193
BstX2I RGATCY 2 cut(s) 130, 189
BstYI RGATCY 2 cut(s) 130, 189
BtsCI GGATG 1 cut(s) 150
Cfr9I CCCGGG 1 cut(s) 193
CseI GACGC 2 cut(s) 211, 232
CviJI RGCY 4 cut(s) 59, 65, 104, 229
CviKI_1 RGCY 4 cut(s) 59, 65, 104, 229
DpnI GATC 3 cut(s) 132, 179, 191
DpnII GATC 3 cut(s) 130, 177, 189
Eam1104I CTCTTC 2 cut(s) 72, 259
EarI CTCTTC 2 cut(s) 72, 259
EciI GGCGGA 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 60
Eco88I CYCGRG 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaiI YATR 2 cut(s) 150, 233
FaqI GGGAC 1 cut(s) 210
FokI GGATG 1 cut(s) 157
HapII CCGG 3 cut(s) 183, 194, 206
HgaI GACGC 2 cut(s) 211, 232
Hin1I GRCGYC 2 cut(s) 203, 243
HpaII CCGG 3 cut(s) 183, 194, 206
HphI GGTGA 1 cut(s) 94
Hpy188I TCNGA 4 cut(s) 13, 76, 118, 144
Hpy99I CGWCG 3 cut(s) 42, 45, 248
HpyAV CCTTC 1 cut(s) 180
Hsp92I GRCGYC 2 cut(s) 203, 243
Kzo9I GATC 3 cut(s) 130, 177, 189
LpnPI CCDG 4 cut(s) 151, 196, 207, 219
MalI GATC 3 cut(s) 132, 179, 191
MboI GATC 3 cut(s) 130, 177, 189
MboII GAAGA 7 cut(s) 89, 121, 131, 134, 137, 140, 276
MflI RGATCY 2 cut(s) 130, 189
MnlI CCTC 2 cut(s) 73, 202
MspI CCGG 3 cut(s) 183, 194, 206
MspR9I CCNGG 2 cut(s) 194, 195
NciI CCSGG 2 cut(s) 194, 195
NdeII GATC 3 cut(s) 130, 177, 189
NlaIV GGNNCC 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 191
PsuI RGATCY 2 cut(s) 130, 189
Sau3AI GATC 3 cut(s) 130, 177, 189
ScrFI CCNGG 2 cut(s) 194, 195
SetI ASST 3 cut(s) 84, 106, 170
SmaI CCCGGG 1 cut(s) 195
SsiI CCGC 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 192, 193
StyI CCWWGG 1 cut(s) 60
TaqI TCGA 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 248
TspGWI ACGGA 2 cut(s) 58, 214
TspMI CCCGGG 1 cut(s) 193
XmaI CCCGGG 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.