Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009823

Physical Location & Seq

Genomic Coordinates Reverse (-)

21491307 .. 21493285

Gene Structure 1979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1147100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGACTGAACAAGAAGAAGATCTCATTTGCAGAATGTATAAGCTCGTCGGAGACAGGTGGGCTCTTATAGCTGGGAGGCTTCCAGGCCGGAAAGCGGAAGAAATAGAGAGGTTCTGGTTAATGAGACATGGAGAAGTATTTGCAAGTAGAAGAAGAACAGAGCTTAAGACGACCAATAACAGATACAACAACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

66

Amino Acids

7.84

Weight (kDa)

9.5

Isoelectric Point (pI)

70.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	2 - 41	3.1e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01380 AT1G01380 AT1G01380 AT2G46410 AT4G01060 AT4G01060 AT4G01060
fragaria_vesca	FvH4_7g16170
malus_domestica	MD07G1147100.v1.1
prunus_persica	Prupe.2G185200_v2.0.a1
pyrus_communis	pycom01g10670
rosa_chinensis	RchiOBHm_Chr1g0359121
rosa_laevigata	RLG00000027899
rosa_multiflora	Rmu_sc0008475.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297320
rosa_rugosa	Rorug01G0267900
rosa_samantha	Rh1AG281600 Rh1BG248400 Rh1CG265900 Rh1DG277100
rosa_wichuraiana	Rw1G025030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	94
AflII	CTTAAG	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	3 cut(s)	43, 71, 163
AluI	AGCT	3 cut(s)	43, 71, 163
Alw26I	GTCTC	2 cut(s)	45, 118
AoxI	GGCC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	2 cut(s)	45, 118
BfrI	CTTAAG	1 cut(s)	164
BglII	AGATCT	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	84
BsaXI	ACNNNNNCTCC	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseYI	CCCAGC	1 cut(s)	71
BshFI	GGCC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	2 cut(s)	45, 118
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	1 cut(s)	87
BspTI	CTTAAG	1 cut(s)	164
BssMI	GATC	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	84
BstAFI	CTTAAG	1 cut(s)	164
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	2 cut(s)	45, 118
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	87
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	6 cut(s)	43, 62, 71, 79, 87, 163
CviKI_1	RGCY	6 cut(s)	43, 62, 71, 79, 87, 163
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	64
FaeI	CATG	1 cut(s)	131
FaiI	YATR	3 cut(s)	39, 68, 129
FatI	CATG	1 cut(s)	127
FriOI	GRGCYC	1 cut(s)	64
GsaI	CCCAGC	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	1 cut(s)	88
Hin1II	CATG	1 cut(s)	131
HpaII	CCGG	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	50
Hpy188III	TCNNGA	1 cut(s)	195
Hpy99I	CGWCG	1 cut(s)	50
HpyCH4V	TGCA	2 cut(s)	30, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
Hsp92II	CATG	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	19
LpnPI	CCDG	6 cut(s)	40, 57, 69, 96, 100, 101
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	5 cut(s)	26, 29, 110, 162, 165
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	64
MmeI	TCCRAC	1 cut(s)	28
MnlI	CCTC	2 cut(s)	69, 102
MseI	TTAA	2 cut(s)	119, 165
MspCI	CTTAAG	1 cut(s)	164
MspI	CCGG	1 cut(s)	88
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	119, 165
Sau3AI	GATC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	5 cut(s)	45, 59, 73, 113, 165
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SsiI	CCGC	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	82
Tru1I	TTAA	2 cut(s)	119, 165
Tru9I	TTAA	2 cut(s)	119, 165
Vha464I	CTTAAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.