Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009823

Physical Location & Seq

Genomic Coordinates Reverse (-)

11474077 .. 11475953

Gene Structure 1877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10670.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTCTACAGGGATAACTACAATTGTCTACAGGGACAACTACAAGTCAACAGAATTTTATTTTGTTTGTTCGTTTTATCCCTCATCAAATTTTACTTGGGTTCCTCTCCCTCTGTTCAGTCTAAGATTCTCTCAAATTCACTACCACCAACTTTTGAAAAAAAAGAAAAAGAAGAAAGAAGCCATGGACAGACGCCGCAGAAAACAAGCCAAGACTAGCACTTCTCGCTCTGAAGAGGTGAGCAGCATTGAGTGGGAGTTCATAAACATGACTGAACAAGAAGAAGATCTCATTTGCAGAATGTATAAGCTCGTCGGAGACAGGTGGGCTCTTATAGCTGGGAGGATTCCAGGTCGGAAAGCAGAAGAAATAGAGAGGTTCTGGTTGATGAGACATGGAGAAGTATTTGCGAGTAGAAGAAGAACGGAGCTTACGACGACCAATAACCGATACAATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

154

Amino Acids

18.44

Weight (kDa)

9.87

Isoelectric Point (pI)

72.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01380 AT1G01380 AT1G01380 AT2G46410 AT4G01060 AT4G01060 AT4G01060
fragaria_vesca	FvH4_7g16170
malus_domestica	MD07G1147100.v1.1
prunus_persica	Prupe.2G185200_v2.0.a1
pyrus_communis	pycom01g10670
rosa_chinensis	RchiOBHm_Chr1g0359121
rosa_laevigata	RLG00000027899
rosa_multiflora	Rmu_sc0008475.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297320
rosa_rugosa	Rorug01G0267900
rosa_samantha	Rh1AG281600 Rh1BG248400 Rh1CG265900 Rh1DG277100
rosa_wichuraiana	Rw1G025030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	5, 27
AciI	CCGC	1 cut(s)	196
AcsI	RAATTY	3 cut(s)	53, 88, 135
AcuI	CTGAAG	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	3 cut(s)	310, 338, 430
AluI	AGCT	3 cut(s)	310, 338, 430
Alw26I	GTCTC	2 cut(s)	312, 385
ApeKI	GCWGC	1 cut(s)	243
ApoI	RAATTY	3 cut(s)	53, 88, 135
AsuHPI	GGTGA	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	255
BciT130I	CCWGG	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	312, 385
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	2 cut(s)	6, 28
BglII	AGATCT	1 cut(s)	286
BisI	GCNGC	2 cut(s)	196, 244
BlsI	GCNGC	2 cut(s)	197, 245
Bme1390I	CCNGG	1 cut(s)	351
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	255
BseYI	CCCAGC	1 cut(s)	338
BslFI	GGGAC	1 cut(s)	47
BsmAI	GTCTC	2 cut(s)	312, 385
BsmFI	GGGAC	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	286
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	1 cut(s)	286
BssNI	GRCGYC	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	351
Bst6I	CTCTTC	1 cut(s)	228
BstACI	GRCGYC	1 cut(s)	193
BstDEI	CTNAG	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	183
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	2 cut(s)	312, 385
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	2 cut(s)	225, 335
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	349
BstSFI	CTRYAG	2 cut(s)	6, 28
BstV1I	GCAGC	1 cut(s)	255
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BtgI	CCRYGG	1 cut(s)	183
CseI	GACGC	1 cut(s)	201
CviAII	CATG	3 cut(s)	184, 268, 395
CviJI	RGCY	6 cut(s)	182, 209, 310, 329, 338, 430
CviKI_1	RGCY	6 cut(s)	182, 209, 310, 329, 338, 430
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	3 cut(s)	187, 271, 398
FaiI	YATR	6 cut(s)	185, 263, 269, 306, 335, 396
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	3 cut(s)	183, 267, 394
FblI	GTMKAC	2 cut(s)	5, 27
Fnu4HI	GCNGC	2 cut(s)	196, 244
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	2 cut(s)	196, 244
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	2 cut(s)	196, 244
GsaI	CCCAGC	1 cut(s)	342
HgaI	GACGC	1 cut(s)	201
Hin1I	GRCGYC	1 cut(s)	193
Hin1II	CATG	3 cut(s)	187, 271, 398
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	2 cut(s)	126, 346
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	3 cut(s)	6, 28, 48
Hpy188I	TCNGA	3 cut(s)	232, 317, 357
Hpy188III	TCNNGA	1 cut(s)	459
Hpy8I	GTNNAC	3 cut(s)	6, 28, 48
Hpy99I	CGWCG	2 cut(s)	317, 439
HpyCH4V	TGCA	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	2 cut(s)	225, 335
HpyF3I	CTNAG	1 cut(s)	122
Hsp92I	GRCGYC	1 cut(s)	193
Hsp92II	CATG	3 cut(s)	187, 271, 398
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	1 cut(s)	427
LpnPI	CCDG	6 cut(s)	16, 307, 324, 336, 363, 367
Lsp1109I	GCAGC	1 cut(s)	255
MaeI	CTAG	1 cut(s)	216
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	7 cut(s)	184, 245, 293, 296, 377, 429, 432
MfeI	CAATTG	1 cut(s)	21
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	5 cut(s)	21, 53, 88, 135, 454
MmeI	TCCRAC	2 cut(s)	295, 335
MnlI	CCTC	6 cut(s)	91, 114, 120, 229, 336, 369
MslI	CAYNNNNRTG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	351
MunI	CAATTG	1 cut(s)	21
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	2 cut(s)	225, 335
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	3 cut(s)	187, 271, 398
NlaIV	GGNNCC	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	1 cut(s)	431
PfeI	GAWTC	2 cut(s)	126, 346
PkrI	GCNGC	2 cut(s)	197, 245
Psp6I	CCWGG	1 cut(s)	349
PspFI	CCCAGC	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	102
PsrI	GAACNNNNNNTAC	2 cut(s)	415, 447
PsuI	RGATCY	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	266
SatI	GCNGC	2 cut(s)	196, 244
Sau3AI	GATC	1 cut(s)	286
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	7 cut(s)	240, 312, 326, 340, 355, 380, 432
SfcI	CTRYAG	2 cut(s)	6, 28
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	5 cut(s)	21, 53, 88, 135, 454
SsiI	CCGC	1 cut(s)	196
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	183
TasI	AATT	5 cut(s)	21, 53, 88, 135, 454
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	2 cut(s)	126, 346
TseI	GCWGC	1 cut(s)	243
TspDTI	ATGAA	1 cut(s)	250
TspGWI	ACGGA	1 cut(s)	440
XapI	RAATTY	3 cut(s)	53, 88, 135
XmiI	GTMKAC	2 cut(s)	5, 27
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.