Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0009823

Physical Location & Seq

Genomic Coordinates Reverse (-)

51605545 .. 51607018

Gene Structure 1474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G025030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGACGTCAAACGCCGCAGAAAACAAGCCAAGACTAGCAGCAAGGTGAGCAGCATTGAGTGGGAGTTCATAAACATGTCGGAACAAGAAGAAGATCTCATTTGTAGAATGTACAAGCTCGTCGGAGACAGGTGGGGACTTATAGCCGGGAGGCTTCCGGGCCGGAAAGCAGAAGAAATAGAGAGGTTCTGGTTAATGAGACACGGAGAAGTATTTGCAAGTAGAAGAAGAACAGAGCAGGAGAAGTACCAGCAACCCCAGCAGCTTAATAATAGCAATAACATGAATAAGTCTACTAAGAACAGCAGGAGATACAATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

107

Amino Acids

12.9

Weight (kDa)

10.13

Isoelectric Point (pI)

94.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	26 - 66	5.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01380 AT1G01380 AT1G01380 AT2G46410 AT4G01060 AT4G01060 AT4G01060
fragaria_vesca	FvH4_7g16170
malus_domestica	MD07G1147100.v1.1
prunus_persica	Prupe.2G185200_v2.0.a1
pyrus_communis	pycom01g10670
rosa_chinensis	RchiOBHm_Chr1g0359121
rosa_laevigata	RLG00000027899
rosa_multiflora	Rmu_sc0008475.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297320
rosa_rugosa	Rorug01G0267900
rosa_samantha	Rh1AG281600 Rh1BG248400 Rh1CG265900 Rh1DG277100
rosa_wichuraiana	Rw1G025030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	9
AccI	GTMKAC	1 cut(s)	293
AciI	CCGC	1 cut(s)	16
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	2 cut(s)	113, 248
AflIII	ACRYGT	1 cut(s)	75
AluBI	AGCT	2 cut(s)	118, 265
AluI	AGCT	2 cut(s)	118, 265
Alw26I	GTCTC	2 cut(s)	120, 193
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	3 cut(s)	39, 51, 262
AspS9I	GGNCC	1 cut(s)	160
AsuC2I	CCSGG	2 cut(s)	148, 159
AsuHPI	GGTGA	1 cut(s)	58
BbvI	GCAGC	3 cut(s)	51, 63, 274
BcnI	CCSGG	2 cut(s)	148, 159
BcoDI	GTCTC	2 cut(s)	120, 193
BfaI	CTAG	1 cut(s)	36
BglII	AGATCT	1 cut(s)	94
BisI	GCNGC	4 cut(s)	16, 40, 52, 263
BlsI	GCNGC	4 cut(s)	17, 41, 53, 264
Bme1390I	CCNGG	2 cut(s)	148, 159
BmgT120I	GGNCC	1 cut(s)	160
BmrFI	CCNGG	2 cut(s)	148, 159
BpuMI	CCSGG	2 cut(s)	148, 159
BsaHI	GRCGYC	1 cut(s)	6
BseXI	GCAGC	3 cut(s)	51, 63, 274
BseYI	CCCAGC	1 cut(s)	258
BshFI	GGCC	1 cut(s)	162
BsiSI	CCGG	3 cut(s)	147, 158, 163
BslFI	GGGAC	1 cut(s)	150
BsmAI	GTCTC	2 cut(s)	120, 193
BsmFI	GGGAC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	162
Bsp1407I	TGTACA	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	94
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	1 cut(s)	162
BsrGI	TGTACA	1 cut(s)	111
BssMI	GATC	1 cut(s)	94
BssNI	GRCGYC	1 cut(s)	6
BstACI	GRCGYC	1 cut(s)	6
BstAUI	TGTACA	1 cut(s)	111
BstDEI	CTNAG	1 cut(s)	297
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	2 cut(s)	120, 193
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 259
BstNSI	RCATGY	1 cut(s)	79
BstSCI	CCNGG	2 cut(s)	146, 157
BstV1I	GCAGC	3 cut(s)	51, 63, 274
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	160
Csp6I	GTAC	2 cut(s)	112, 247
CviAII	CATG	2 cut(s)	76, 283
CviJI	RGCY	6 cut(s)	29, 118, 146, 154, 162, 265
CviKI_1	RGCY	6 cut(s)	29, 118, 146, 154, 162, 265
CviQI	GTAC	2 cut(s)	112, 247
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
FaeI	CATG	2 cut(s)	79, 286
FaiI	YATR	4 cut(s)	71, 77, 143, 284
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	2 cut(s)	75, 282
FblI	GTMKAC	1 cut(s)	293
Fnu4HI	GCNGC	4 cut(s)	16, 40, 52, 263
Fsp4HI	GCNGC	4 cut(s)	16, 40, 52, 263
FspBI	CTAG	1 cut(s)	36
GluI	GCNGC	4 cut(s)	16, 40, 52, 263
GsaI	CCCAGC	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	3 cut(s)	147, 158, 163
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	79, 286
HpaII	CCGG	3 cut(s)	147, 158, 163
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188I	TCNGA	2 cut(s)	82, 125
Hpy188III	TCNNGA	1 cut(s)	321
Hpy8I	GTNNAC	1 cut(s)	294
Hpy99I	CGWCG	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 259
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	1 cut(s)	6
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	2 cut(s)	79, 286
Kzo9I	GATC	1 cut(s)	94
LpnPI	CCDG	9 cut(s)	115, 160, 171, 175, 176, 224, 263, 272, 292
Lsp1109I	GCAGC	3 cut(s)	51, 63, 274
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	6
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	5 cut(s)	101, 104, 185, 237, 240
MflI	RGATCY	1 cut(s)	94
MluCI	AATT	1 cut(s)	316
MmeI	TCCRAC	2 cut(s)	60, 103
MnlI	CCTC	2 cut(s)	144, 177
MseI	TTAA	2 cut(s)	194, 267
MslI	CAYNNNNRTG	1 cut(s)	74
MspI	CCGG	3 cut(s)	147, 158, 163
MspR9I	CCNGG	2 cut(s)	148, 159
MwoI	GCNNNNNNNGC	2 cut(s)	48, 259
NciI	CCSGG	2 cut(s)	148, 159
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	2 cut(s)	79, 286
NspI	RCATGY	1 cut(s)	79
PciI	ACATGT	1 cut(s)	75
PkrI	GCNGC	4 cut(s)	17, 41, 53, 264
PscI	ACATGT	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	94
RsaI	GTAC	2 cut(s)	113, 248
RsaNI	GTAC	2 cut(s)	112, 247
RseI	CAYNNNNRTG	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	194, 267
SatI	GCNGC	4 cut(s)	16, 40, 52, 263
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	1 cut(s)	160
ScrFI	CCNGG	2 cut(s)	148, 159
SetI	ASST	6 cut(s)	9, 48, 120, 134, 188, 267
SmiMI	CAYNNNNRTG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	316
SsiI	CCGC	1 cut(s)	16
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	146, 157
TaiI	ACGT	1 cut(s)	9
TasI	AATT	1 cut(s)	316
TatI	WGTACW	1 cut(s)	111
TauI	GCSGC	1 cut(s)	18
Tru1I	TTAA	2 cut(s)	194, 267
Tru9I	TTAA	2 cut(s)	194, 267
TseI	GCWGC	3 cut(s)	39, 51, 262
TspDTI	ATGAA	2 cut(s)	58, 299
TspGWI	ACGGA	1 cut(s)	219
XceI	RCATGY	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	293
XspI	CTAG	1 cut(s)	36
ZraI	GACGTC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.