Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009823

Physical Location & Seq

Genomic Coordinates Forward (+)

38038285 .. 38040356

Gene Structure 2072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0267900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCCTTACGGGACGCTTGAAGTTGTTCTGGTGGATGCCAAGGACCTCTACGACACTGCTAGTTTTCTCACCAAAATGGATCCTTATGTCATTTTCACTGTCAAGACCCAAGAGAAAACAAGCACTGTGGCTCAAGGGGAAGGAACCAACCCGGAATGGAATGAAAATTTTTTATTCACAGTGACAGATGATGTGACCGAACTCCGTTTGAAAATAATGGACAAAGACACCTTCACCGCAGATGATTTTGTTGGAGAAGCAACCATTCCTCTAGAGCCACAATTGTTCACTGAAGGAAGCATTCCACCAACTTCATACAATGTTGTCAGCAAGCACCAGAAGTACCGTGGAGAGATCACAATTGGGCTCAATTTCACTCCTGATCGATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

130

Amino Acids

14.64

Weight (kDa)

4.38

Isoelectric Point (pI)

14.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	4 - 101	2.7e-22	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01380 AT1G01380 AT1G01380 AT2G46410 AT4G01060 AT4G01060 AT4G01060
fragaria_vesca	FvH4_7g16170
malus_domestica	MD07G1147100.v1.1
prunus_persica	Prupe.2G185200_v2.0.a1
pyrus_communis	pycom01g10670
rosa_chinensis	RchiOBHm_Chr1g0359121
rosa_laevigata	RLG00000027899
rosa_multiflora	Rmu_sc0008475.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297320
rosa_rugosa	Rorug01G0267900
rosa_samantha	Rh1AG281600 Rh1BG248400 Rh1CG265900 Rh1DG277100
rosa_wichuraiana	Rw1G025030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	3 cut(s)	74, 87, 381
AcsI	RAATTY	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	20, 211
AlwI	GGATC	3 cut(s)	74, 87, 381
ApoI	RAATTY	1 cut(s)	166
Asp700I	GAANNNNTTC	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	43
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	2 cut(s)	61, 226
AvaII	GGWCC	1 cut(s)	43
BamHI	GGATCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	369
BcnI	CCSGG	1 cut(s)	152
BfaI	CTAG	2 cut(s)	60, 272
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	2 cut(s)	81, 145
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	152
Bsa29I	ATCGAT	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	39, 346
BseCI	ATCGAT	1 cut(s)	385
BseDI	CCNNGG	2 cut(s)	39, 346
BseGI	GGATG	1 cut(s)	40
BshVI	ATCGAT	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	4 cut(s)	79, 354, 382, 386
BspACI	CCGC	1 cut(s)	237
BspDI	ATCGAT	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	81, 145
BspPI	GGATC	3 cut(s)	74, 87, 381
BssECI	CCNNGG	2 cut(s)	39, 346
BssMI	GATC	4 cut(s)	79, 354, 382, 386
BssT1I	CCWWGG	1 cut(s)	39
Bst4CI	ACNGT	4 cut(s)	100, 127, 181, 347
BstC8I	GCNNGC	1 cut(s)	332
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	4 cut(s)	82, 357, 385, 389
BstMBI	GATC	4 cut(s)	79, 354, 382, 386
BstSCI	CCNGG	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
Bsu15I	ATCGAT	1 cut(s)	385
BsuTUI	ATCGAT	1 cut(s)	385
BtgI	CCRYGG	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	40
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	5 cut(s)	54, 96, 123, 186, 288
Cac8I	GCNNGC	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	43
ClaI	ATCGAT	1 cut(s)	385
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	343
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviJI	RGCY	3 cut(s)	131, 277, 367
CviKI_1	RGCY	3 cut(s)	131, 277, 367
CviQI	GTAC	1 cut(s)	343
DpnI	GATC	4 cut(s)	81, 356, 384, 388
DpnII	GATC	4 cut(s)	79, 354, 382, 386
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	39
FaiI	YATR	2 cut(s)	87, 316
FaqI	GGGAC	1 cut(s)	25
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	1 cut(s)	369
FspBI	CTAG	2 cut(s)	60, 272
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	1 cut(s)	22
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	2 cut(s)	61, 226
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188III	TCNNGA	4 cut(s)	103, 272, 380, 390
Hpy8I	GTNNAC	1 cut(s)	288
HpyAV	CCTTC	3 cut(s)	134, 241, 287
HpyCH4III	ACNGT	4 cut(s)	100, 127, 181, 347
Kzo9I	GATC	4 cut(s)	79, 354, 382, 386
LpnPI	CCDG	3 cut(s)	14, 165, 350
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	2 cut(s)	60, 272
MaeIII	GTNAC	2 cut(s)	181, 193
MalI	GATC	4 cut(s)	81, 356, 384, 388
MboI	GATC	4 cut(s)	79, 354, 382, 386
MfeI	CAATTG	2 cut(s)	281, 360
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	4 cut(s)	166, 281, 360, 370
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	2 cut(s)	56, 279
MroXI	GAANNNNTTC	1 cut(s)	24
MslI	CAYNNNNRTG	1 cut(s)	74
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	152
MunI	CAATTG	2 cut(s)	281, 360
Mva1269I	GAATGC	1 cut(s)	300
NciI	CCSGG	1 cut(s)	152
NdeII	GATC	4 cut(s)	79, 354, 382, 386
NlaIV	GGNNCC	2 cut(s)	81, 145
NmuCI	GTSAC	2 cut(s)	181, 193
PctI	GAATGC	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	24
PpuMI	RGGWCCY	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	43
PspN4I	GGNNCC	2 cut(s)	81, 145
PspPI	GGNCC	1 cut(s)	43
PspPPI	RGGWCCY	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	74
Sau3AI	GATC	4 cut(s)	79, 354, 382, 386
Sau96I	GGNCC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	2 cut(s)	48, 233
SfaNI	GCATC	1 cut(s)	25
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	4 cut(s)	166, 281, 360, 370
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	2 cut(s)	60, 272
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	4 cut(s)	100, 127, 181, 347
TaqI	TCGA	1 cut(s)	385
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	4 cut(s)	166, 281, 360, 370
TscAI	CASTG	5 cut(s)	61, 103, 130, 186, 295
TseFI	GTSAC	2 cut(s)	181, 193
Tsp45I	GTSAC	2 cut(s)	181, 193
TspDTI	ATGAA	2 cut(s)	177, 303
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	5 cut(s)	61, 103, 130, 186, 295
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	1 cut(s)	166
XbaI	TCTAGA	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	2 cut(s)	60, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.