Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009823

Physical Location & Seq

Genomic Coordinates Reverse (-)

13900441 .. 13902580

Gene Structure 2140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g16170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGACGTCAAACGCCGCAGAAAACAAGCCAAGACTAGCAGCAGTTCCTTCTCTGAAGAGGTAAGCAGCATTGAGTGGGAGTTCATAAACATGTCGGAACAAGAGGAGGATCTCATTTGTAGAATGTACAAGCTCGTCGGAGACAGGTGGGCACTTATAGCCGGAAGGCTTCCGGGCCGGAAAGCGGAAGAAATAGAGAGGTTCTGGTTAATGAGACATGGAGAAGTATTTGCAAGTAGAAGAAGAACAGAGCAGGAGAAGTACCAGCAAACCCAGCAGCTTTGTCATAATAATAATAACAAGAACAAGTCTACCAAGAATAGTAGGAGATACAATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

114

Amino Acids

13.61

Weight (kDa)

9.74

Isoelectric Point (pI)

101.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	31 - 71	1.5e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01380 AT1G01380 AT1G01380 AT2G46410 AT4G01060 AT4G01060 AT4G01060
fragaria_vesca	FvH4_7g16170
malus_domestica	MD07G1147100.v1.1
prunus_persica	Prupe.2G185200_v2.0.a1
pyrus_communis	pycom01g10670
rosa_chinensis	RchiOBHm_Chr1g0359121
rosa_laevigata	RLG00000027899
rosa_multiflora	Rmu_sc0008475.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297320
rosa_rugosa	Rorug01G0267900
rosa_samantha	Rh1AG281600 Rh1BG248400 Rh1CG265900 Rh1DG277100
rosa_wichuraiana	Rw1G025030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	9
AccI	GTMKAC	1 cut(s)	311
AciI	CCGC	2 cut(s)	16, 185
AclWI	GGATC	1 cut(s)	117
AcuI	CTGAAG	1 cut(s)	75
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	2 cut(s)	128, 263
AfiI	CCNNNNNNNGG	1 cut(s)	184
AflIII	ACRYGT	1 cut(s)	90
AluBI	AGCT	2 cut(s)	133, 280
AluI	AGCT	2 cut(s)	133, 280
Alw26I	GTCTC	2 cut(s)	135, 208
AlwI	GGATC	1 cut(s)	117
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	3 cut(s)	39, 66, 277
AspS9I	GGNCC	1 cut(s)	175
AsuC2I	CCSGG	1 cut(s)	174
BaeGI	GKGCMC	1 cut(s)	154
BbvI	GCAGC	3 cut(s)	51, 78, 289
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	2 cut(s)	135, 208
BfaI	CTAG	1 cut(s)	36
BisI	GCNGC	4 cut(s)	16, 40, 67, 278
BlsI	GCNGC	4 cut(s)	17, 41, 68, 279
Bme1390I	CCNGG	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	3 cut(s)	51, 78, 289
BseYI	CCCAGC	1 cut(s)	273
BshFI	GGCC	1 cut(s)	177
BsiSI	CCGG	3 cut(s)	162, 173, 178
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	2 cut(s)	135, 208
BsnI	GGCC	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp1407I	TGTACA	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	2 cut(s)	16, 185
BspANI	GGCC	1 cut(s)	177
BspPI	GGATC	1 cut(s)	117
BsrGI	TGTACA	1 cut(s)	126
BssMI	GATC	1 cut(s)	109
BssNI	GRCGYC	1 cut(s)	6
Bst6I	CTCTTC	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	6
BstAUI	TGTACA	1 cut(s)	126
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	2 cut(s)	135, 208
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 274
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	172
BstSLI	GKGCMC	1 cut(s)	154
BstV1I	GCAGC	3 cut(s)	51, 78, 289
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	127, 262
CviAII	CATG	2 cut(s)	91, 218
CviJI	RGCY	6 cut(s)	29, 133, 161, 169, 177, 280
CviKI_1	RGCY	6 cut(s)	29, 133, 161, 169, 177, 280
CviQI	GTAC	2 cut(s)	127, 262
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	75
FaeI	CATG	2 cut(s)	94, 221
FaiI	YATR	5 cut(s)	86, 92, 158, 219, 288
FatI	CATG	2 cut(s)	90, 217
FblI	GTMKAC	1 cut(s)	311
Fnu4HI	GCNGC	4 cut(s)	16, 40, 67, 278
Fsp4HI	GCNGC	4 cut(s)	16, 40, 67, 278
FspBI	CTAG	1 cut(s)	36
GluI	GCNGC	4 cut(s)	16, 40, 67, 278
GsaI	CCCAGC	1 cut(s)	277
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	3 cut(s)	162, 173, 178
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	94, 221
HpaII	CCGG	3 cut(s)	162, 173, 178
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	3 cut(s)	55, 97, 140
Hpy188III	TCNNGA	1 cut(s)	339
Hpy8I	GTNNAC	1 cut(s)	312
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	58, 159
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 274
HpySE526I	ACGT	1 cut(s)	6
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	2 cut(s)	94, 221
Kzo9I	GATC	1 cut(s)	109
LpnPI	CCDG	8 cut(s)	130, 175, 186, 190, 191, 239, 278, 287
Lsp1109I	GCAGC	3 cut(s)	51, 78, 289
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	6
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	4 cut(s)	68, 200, 252, 255
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	1 cut(s)	334
MmeI	TCCRAC	2 cut(s)	75, 118
MnlI	CCTC	4 cut(s)	52, 97, 100, 192
MseI	TTAA	1 cut(s)	209
MslI	CAYNNNNRTG	1 cut(s)	89
MspI	CCGG	3 cut(s)	162, 173, 178
MspR9I	CCNGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	158, 274
NciI	CCSGG	1 cut(s)	174
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	2 cut(s)	94, 221
NspI	RCATGY	1 cut(s)	94
PciI	ACATGT	1 cut(s)	90
PkrI	GCNGC	4 cut(s)	17, 41, 68, 279
PscI	ACATGT	1 cut(s)	90
PspFI	CCCAGC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	2 cut(s)	128, 263
RsaNI	GTAC	2 cut(s)	127, 262
RseI	CAYNNNNRTG	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	4 cut(s)	16, 40, 67, 278
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	6 cut(s)	9, 63, 135, 149, 203, 282
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	334
SsiI	CCGC	2 cut(s)	16, 185
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	172
TaiI	ACGT	1 cut(s)	9
TasI	AATT	1 cut(s)	334
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TseI	GCWGC	3 cut(s)	39, 66, 277
TspDTI	ATGAA	1 cut(s)	73
XceI	RCATGY	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	311
XspI	CTAG	1 cut(s)	36
ZraI	GACGTC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.