Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009823

Physical Location & Seq

Genomic Coordinates Reverse (-)

51084937 .. 51087805

Gene Structure 2869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG281600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCAGAGGTAAGCAGCATTGAGTGGGAGTTCATAAACATGTCGGAACAAGAAGAAGACCTCATTTGTAGAATGTACAAGCTCGTCGGAGACAGGTGGGGACTTATAGCCGGGAGGCTTCCGGGCCGGAAAGCAGAAGAAATAGAGAGGTTCTGGTTAATGAGACACGGAGAAGTATTTGCAAGTAGAAGAAGAACAGAGCAGGAGAAGTACCAGCAACCCCAGCAGCTTAATAATAGCAATAACATGAATAAGTCTACTAAGAATAGCAGGAGATACAATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

95

Amino Acids

11.43

Weight (kDa)

8.89

Isoelectric Point (pI)

88.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 54	3.9e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01380 AT1G01380 AT1G01380 AT2G46410 AT4G01060 AT4G01060 AT4G01060
fragaria_vesca	FvH4_7g16170
malus_domestica	MD07G1147100.v1.1
prunus_persica	Prupe.2G185200_v2.0.a1
pyrus_communis	pycom01g10670
rosa_chinensis	RchiOBHm_Chr1g0359121
rosa_laevigata	RLG00000027899
rosa_multiflora	Rmu_sc0008475.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297320
rosa_rugosa	Rorug01G0267900
rosa_samantha	Rh1AG281600 Rh1BG248400 Rh1CG265900 Rh1DG277100
rosa_wichuraiana	Rw1G025030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	257
AfaI	GTAC	2 cut(s)	77, 212
AflIII	ACRYGT	1 cut(s)	39
AluBI	AGCT	2 cut(s)	82, 229
AluI	AGCT	2 cut(s)	82, 229
Alw26I	GTCTC	2 cut(s)	84, 157
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	2 cut(s)	15, 226
AspS9I	GGNCC	1 cut(s)	124
AsuC2I	CCSGG	2 cut(s)	112, 123
BbsI	GAAGAC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	27, 238
BcnI	CCSGG	2 cut(s)	112, 123
BcoDI	GTCTC	2 cut(s)	84, 157
BisI	GCNGC	2 cut(s)	16, 227
BlsI	GCNGC	2 cut(s)	17, 228
Bme1390I	CCNGG	2 cut(s)	112, 123
BmgT120I	GGNCC	1 cut(s)	124
BmrFI	CCNGG	2 cut(s)	112, 123
BpiI	GAAGAC	1 cut(s)	63
BpuMI	CCSGG	2 cut(s)	112, 123
BseXI	GCAGC	2 cut(s)	27, 238
BseYI	CCCAGC	1 cut(s)	222
BshFI	GGCC	1 cut(s)	126
BsiSI	CCGG	3 cut(s)	111, 122, 127
BslFI	GGGAC	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	84, 157
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	126
Bsp1407I	TGTACA	1 cut(s)	75
BspANI	GGCC	1 cut(s)	126
BsrGI	TGTACA	1 cut(s)	75
BstAUI	TGTACA	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	261
BstMAI	GTCTC	2 cut(s)	84, 157
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	2 cut(s)	110, 121
BstV1I	GCAGC	2 cut(s)	27, 238
BstV2I	GAAGAC	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	124
Csp6I	GTAC	2 cut(s)	76, 211
CviAII	CATG	2 cut(s)	40, 247
CviJI	RGCY	5 cut(s)	82, 110, 118, 126, 229
CviKI_1	RGCY	5 cut(s)	82, 110, 118, 126, 229
CviQI	GTAC	2 cut(s)	76, 211
DdeI	CTNAG	1 cut(s)	261
FaeI	CATG	2 cut(s)	43, 250
FaiI	YATR	4 cut(s)	35, 41, 107, 248
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	2 cut(s)	39, 246
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	2 cut(s)	16, 227
Fsp4HI	GCNGC	2 cut(s)	16, 227
GluI	GCNGC	2 cut(s)	16, 227
GsaI	CCCAGC	1 cut(s)	226
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	3 cut(s)	111, 122, 127
Hin1II	CATG	2 cut(s)	43, 250
HpaII	CCGG	3 cut(s)	111, 122, 127
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	2 cut(s)	46, 89
Hpy188III	TCNNGA	1 cut(s)	285
Hpy8I	GTNNAC	1 cut(s)	258
Hpy99I	CGWCG	1 cut(s)	89
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	43, 250
LpnPI	CCDG	9 cut(s)	79, 124, 135, 139, 140, 188, 227, 236, 256
Lsp1109I	GCAGC	2 cut(s)	27, 238
MboII	GAAGA	5 cut(s)	65, 68, 149, 201, 204
MluCI	AATT	1 cut(s)	280
MmeI	TCCRAC	2 cut(s)	24, 67
MnlI	CCTC	3 cut(s)	71, 108, 141
MseI	TTAA	2 cut(s)	158, 231
MslI	CAYNNNNRTG	1 cut(s)	38
MspI	CCGG	3 cut(s)	111, 122, 127
MspR9I	CCNGG	2 cut(s)	112, 123
MwoI	GCNNNNNNNGC	1 cut(s)	223
NciI	CCSGG	2 cut(s)	112, 123
NlaIII	CATG	2 cut(s)	43, 250
NspI	RCATGY	1 cut(s)	43
PciI	ACATGT	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	17, 228
PscI	ACATGT	1 cut(s)	39
PspFI	CCCAGC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	124
RsaI	GTAC	2 cut(s)	77, 212
RsaNI	GTAC	2 cut(s)	76, 211
RseI	CAYNNNNRTG	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	158, 231
SatI	GCNGC	2 cut(s)	16, 227
Sau96I	GGNCC	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	112, 123
SetI	ASST	6 cut(s)	12, 63, 84, 98, 152, 231
SmiMI	CAYNNNNRTG	1 cut(s)	38
Sse9I	AATT	1 cut(s)	280
StyD4I	CCNGG	2 cut(s)	110, 121
TasI	AATT	1 cut(s)	280
TatI	WGTACW	1 cut(s)	75
Tru1I	TTAA	2 cut(s)	158, 231
Tru9I	TTAA	2 cut(s)	158, 231
TseI	GCWGC	2 cut(s)	15, 226
TspDTI	ATGAA	2 cut(s)	22, 263
TspGWI	ACGGA	1 cut(s)	183
XceI	RCATGY	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.