Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0009823

Physical Location & Seq

Genomic Coordinates Reverse (-)

37648336 .. 37650912

Gene Structure 2577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG248400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCAGAGGTAAGCAGCATTGAGTGGGAGTTCATAAACATGTCGGAACAAGAAGAAGATCTCATTTGTAGAATGTACAAGCTCGTCGGAGACAGGTGGGGACTTATAGCCGGGAGGCTTCCGGGCCGGAAAGCAGAAGAAATAGAGAGGTTCTGGTTAATGAGACACGGAGAAGTATTTGCAAGTAGAAGAACAGAGCAGGAGAAGTACCAGCAACCCCAGCAGCTTAATAATAGCAATAACATGAATAAGTCTACTAAGAATAGTAGGAGATATAATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

94

Amino Acids

11.27

Weight (kDa)

7.88

Isoelectric Point (pI)

82.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 54	3.8e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01380 AT1G01380 AT1G01380 AT2G46410 AT4G01060 AT4G01060 AT4G01060
fragaria_vesca	FvH4_7g16170
malus_domestica	MD07G1147100.v1.1
prunus_persica	Prupe.2G185200_v2.0.a1
pyrus_communis	pycom01g10670
rosa_chinensis	RchiOBHm_Chr1g0359121
rosa_laevigata	RLG00000027899
rosa_multiflora	Rmu_sc0008475.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297320
rosa_rugosa	Rorug01G0267900
rosa_samantha	Rh1AG281600 Rh1BG248400 Rh1CG265900 Rh1DG277100
rosa_wichuraiana	Rw1G025030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	254
AfaI	GTAC	2 cut(s)	77, 209
AflIII	ACRYGT	1 cut(s)	39
AluBI	AGCT	2 cut(s)	82, 226
AluI	AGCT	2 cut(s)	82, 226
Alw26I	GTCTC	2 cut(s)	84, 157
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	2 cut(s)	15, 223
AspS9I	GGNCC	1 cut(s)	124
AsuC2I	CCSGG	2 cut(s)	112, 123
BbvI	GCAGC	2 cut(s)	27, 235
BcnI	CCSGG	2 cut(s)	112, 123
BcoDI	GTCTC	2 cut(s)	84, 157
BglII	AGATCT	1 cut(s)	58
BisI	GCNGC	2 cut(s)	16, 224
BlsI	GCNGC	2 cut(s)	17, 225
Bme1390I	CCNGG	2 cut(s)	112, 123
BmgT120I	GGNCC	1 cut(s)	124
BmrFI	CCNGG	2 cut(s)	112, 123
BpuMI	CCSGG	2 cut(s)	112, 123
BseXI	GCAGC	2 cut(s)	27, 235
BseYI	CCCAGC	1 cut(s)	219
BshFI	GGCC	1 cut(s)	126
BsiSI	CCGG	3 cut(s)	111, 122, 127
BslFI	GGGAC	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	84, 157
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	126
Bsp1407I	TGTACA	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	58
BspANI	GGCC	1 cut(s)	126
BsrGI	TGTACA	1 cut(s)	75
BssMI	GATC	1 cut(s)	58
BstAUI	TGTACA	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	258
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	2 cut(s)	84, 157
BstMBI	GATC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	2 cut(s)	110, 121
BstV1I	GCAGC	2 cut(s)	27, 235
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	124
Csp6I	GTAC	2 cut(s)	76, 208
CviAII	CATG	2 cut(s)	40, 244
CviJI	RGCY	5 cut(s)	82, 110, 118, 126, 226
CviKI_1	RGCY	5 cut(s)	82, 110, 118, 126, 226
CviQI	GTAC	2 cut(s)	76, 208
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
FaeI	CATG	2 cut(s)	43, 247
FaiI	YATR	5 cut(s)	35, 41, 107, 245, 276
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	2 cut(s)	39, 243
FblI	GTMKAC	1 cut(s)	254
Fnu4HI	GCNGC	2 cut(s)	16, 224
Fsp4HI	GCNGC	2 cut(s)	16, 224
GluI	GCNGC	2 cut(s)	16, 224
GsaI	CCCAGC	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	3 cut(s)	111, 122, 127
Hin1II	CATG	2 cut(s)	43, 247
HpaII	CCGG	3 cut(s)	111, 122, 127
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	2 cut(s)	46, 89
Hpy188III	TCNNGA	1 cut(s)	282
Hpy8I	GTNNAC	1 cut(s)	255
Hpy99I	CGWCG	1 cut(s)	89
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	43, 247
Kzo9I	GATC	1 cut(s)	58
LpnPI	CCDG	8 cut(s)	79, 124, 135, 139, 140, 185, 224, 233
Lsp1109I	GCAGC	2 cut(s)	27, 235
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	4 cut(s)	65, 68, 149, 201
MflI	RGATCY	1 cut(s)	58
MluCI	AATT	1 cut(s)	277
MmeI	TCCRAC	2 cut(s)	24, 67
MnlI	CCTC	2 cut(s)	108, 141
MseI	TTAA	2 cut(s)	158, 228
MslI	CAYNNNNRTG	1 cut(s)	38
MspI	CCGG	3 cut(s)	111, 122, 127
MspR9I	CCNGG	2 cut(s)	112, 123
MwoI	GCNNNNNNNGC	1 cut(s)	220
NciI	CCSGG	2 cut(s)	112, 123
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	2 cut(s)	43, 247
NspI	RCATGY	1 cut(s)	43
PciI	ACATGT	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	17, 225
PscI	ACATGT	1 cut(s)	39
PspFI	CCCAGC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	2 cut(s)	77, 209
RsaNI	GTAC	2 cut(s)	76, 208
RseI	CAYNNNNRTG	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	158, 228
SatI	GCNGC	2 cut(s)	16, 224
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	112, 123
SetI	ASST	5 cut(s)	12, 84, 98, 152, 228
SmiMI	CAYNNNNRTG	1 cut(s)	38
Sse9I	AATT	1 cut(s)	277
StyD4I	CCNGG	2 cut(s)	110, 121
TasI	AATT	1 cut(s)	277
TatI	WGTACW	1 cut(s)	75
Tru1I	TTAA	2 cut(s)	158, 228
Tru9I	TTAA	2 cut(s)	158, 228
TseI	GCWGC	2 cut(s)	15, 223
TspDTI	ATGAA	2 cut(s)	22, 260
TspGWI	ACGGA	1 cut(s)	183
XceI	RCATGY	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.