Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009823

Physical Location & Seq

Genomic Coordinates Forward (+)

460395 .. 461246

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G01060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGATAACCATCGCAGGACTAAGCAACCCAAGACCAACTCCATCGTTACTTCTTCTTCTGAAGGAACAGAAGTGAGTAGTCTTGAGTGGGAAGTTGTGAACATGAGTCAAGAAGAAGAAGATTTGGTCTCTCGAATGCATAAGCTTGTCGGTGACAGGTGGGAACTGATAGCTGGGAGGATCCCAGGAAGAACCGCTGGAGAAATTGAGAGGTTTTGGGTCATGAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010453 GO:0010454 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0023051 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0048364 GO:0048468 GO:0048469 GO:0048519 GO:0048523 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0071695 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1900032 GO:1900033 GO:1901363 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

77

Amino Acids

8.9

Weight (kDa)

5.65

Isoelectric Point (pI)

72.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	31 - 71	1.1e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01380 AT1G01380 AT1G01380 AT2G46410 AT4G01060 AT4G01060 AT4G01060
fragaria_vesca	FvH4_7g16170
malus_domestica	MD07G1147100.v1.1
prunus_persica	Prupe.2G185200_v2.0.a1
pyrus_communis	pycom01g10670
rosa_chinensis	RchiOBHm_Chr1g0359121
rosa_laevigata	RLG00000027899
rosa_multiflora	Rmu_sc0008475.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297320
rosa_rugosa	Rorug01G0267900
rosa_samantha	Rh1AG281600 Rh1BG248400 Rh1CG265900 Rh1DG277100
rosa_wichuraiana	Rw1G025030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	2 cut(s)	175, 188
AcuI	CTGAAG	1 cut(s)	81
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	2 cut(s)	145, 173
AluI	AGCT	2 cut(s)	145, 173
Alw26I	GTCTC	1 cut(s)	133
AlwI	GGATC	2 cut(s)	175, 188
AsuHPI	GGTGA	1 cut(s)	164
BamHI	GGATCC	1 cut(s)	180
BccI	CCATC	2 cut(s)	18, 50
BciT130I	CCWGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	184
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	184
BseJI	GATNNNNATC	1 cut(s)	9
BseYI	CCCAGC	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	133
BsmI	GAATGC	1 cut(s)	141
Bso31I	GGTCTC	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	1 cut(s)	195
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	182
BspPI	GGATC	2 cut(s)	175, 188
BspTNI	GGTCTC	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	21
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	180
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
CciI	TCATGA	1 cut(s)	222
CviAII	CATG	2 cut(s)	103, 223
CviJI	RGCY	2 cut(s)	145, 173
CviKI_1	RGCY	2 cut(s)	145, 173
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	184
EcoT22I	ATGCAT	1 cut(s)	141
FaeI	CATG	2 cut(s)	106, 226
FaiI	YATR	3 cut(s)	104, 141, 224
FatI	CATG	2 cut(s)	102, 222
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	219
Hin1II	CATG	2 cut(s)	106, 226
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	1 cut(s)	106
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	4 cut(s)	83, 110, 132, 223
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	56
HpyCH4V	TGCA	1 cut(s)	139
HpyF3I	CTNAG	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	106, 226
Kzo9I	GATC	1 cut(s)	180
LpnPI	CCDG	5 cut(s)	142, 159, 171, 183, 198
MaeIII	GTNAC	2 cut(s)	46, 152
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	6 cut(s)	45, 48, 125, 128, 131, 201
MflI	RGATCY	1 cut(s)	180
MluCI	AATT	2 cut(s)	204, 229
MlyI	GAGTC	1 cut(s)	115
MnlI	CCTC	2 cut(s)	171, 204
Mph1103I	ATGCAT	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	2 cut(s)	106, 226
NlaIV	GGNNCC	1 cut(s)	182
NmuCI	GTSAC	1 cut(s)	152
NsiI	ATGCAT	1 cut(s)	141
PagI	TCATGA	1 cut(s)	222
PctI	GAATGC	1 cut(s)	141
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	180
Sau3AI	GATC	1 cut(s)	180
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	4 cut(s)	147, 161, 175, 215
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	2 cut(s)	204, 229
SsiI	CCGC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	184
TaqI	TCGA	1 cut(s)	133
TasI	AATT	2 cut(s)	204, 229
TseFI	GTSAC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	152
Zsp2I	ATGCAT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.