Rh1CG265900
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0009823
Physical Location & Seq
Reverse (-)
53116499 .. 53119429
2931 bp
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UTR
Exon/CDS
Intron
Rh1CG265900.1

Sequence Viewer

Length: 288 bp
ATGGCAGAGGTGAGCAGCATTGAGTGGGAGTTCATAAACATGTCGGAACAAGAAGAAGATCTCATTTGTAGAATGTACAAGCTCGTCGGAGACAGGTGGGGACTTATAGCCGGGAGGCTTCCGGGCCGGAAAGCAGAAGAAATAGAGAGGTTCTGGTTAATGAGACACGGAGAAGTATTTGCAAGTAGAAGAAGAACAGAGCAGGAGAAGTACCAGCAACCCCAGGAGCTTAATAATAGCAATAACATGAATAAGTCTACTAAGAACAGCAGGAGATACAATTCTTGA

Protein Analysis

95

Amino Acids

11.43

Weight (kDa)

7.88

Isoelectric Point (pI)

88.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 54 3.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009823)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01380 AT1G01380 AT1G01380 AT2G46410 AT4G01060 AT4G01060 AT4G01060
fragaria_vesca FvH4_7g16170
malus_domestica MD07G1147100.v1.1
prunus_persica Prupe.2G185200_v2.0.a1
pyrus_communis pycom01g10670
rosa_chinensis RchiOBHm_Chr1g0359121
rosa_laevigata RLG00000027899
rosa_multiflora Rmu_sc0008475.1_g000001
rosa_roxburghii Rroxscaffold_4G00297320
rosa_rugosa Rorug01G0267900
rosa_samantha Rh1AG281600 Rh1BG248400 Rh1CG265900 Rh1DG277100
rosa_wichuraiana Rw1G025030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 257
AfaI GTAC 2 cut(s) 77, 212
AflIII ACRYGT 1 cut(s) 39
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 2 cut(s) 82, 229
AluI AGCT 2 cut(s) 82, 229
Alw26I GTCTC 2 cut(s) 84, 157
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 124
AsuC2I CCSGG 2 cut(s) 112, 123
AsuHPI GGTGA 1 cut(s) 22
BbvI GCAGC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 224
BcnI CCSGG 2 cut(s) 112, 123
BcoDI GTCTC 2 cut(s) 84, 157
BglII AGATCT 1 cut(s) 58
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
Bme1390I CCNGG 3 cut(s) 112, 123, 224
BmgT120I GGNCC 1 cut(s) 124
BmrFI CCNGG 3 cut(s) 112, 123, 224
BpuMI CCSGG 2 cut(s) 112, 123
BsaJI CCNNGG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 27
BshFI GGCC 1 cut(s) 126
BsiSI CCGG 3 cut(s) 111, 122, 127
BslFI GGGAC 1 cut(s) 114
BsmAI GTCTC 2 cut(s) 84, 157
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 1 cut(s) 126
Bsp1407I TGTACA 1 cut(s) 75
Bsp143I GATC 1 cut(s) 58
BspANI GGCC 1 cut(s) 126
BsrGI TGTACA 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 224
BstAUI TGTACA 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 261
BstKTI GATC 1 cut(s) 61
BstMAI GTCTC 2 cut(s) 84, 157
BstMBI GATC 1 cut(s) 58
BstNI CCWGG 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 43
BstSCI CCNGG 3 cut(s) 110, 121, 222
BstV1I GCAGC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 124
Csp6I GTAC 2 cut(s) 76, 211
CviAII CATG 2 cut(s) 40, 247
CviJI RGCY 5 cut(s) 82, 110, 118, 126, 229
CviKI_1 RGCY 5 cut(s) 82, 110, 118, 126, 229
CviQI GTAC 2 cut(s) 76, 211
DdeI CTNAG 1 cut(s) 261
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 222
FaeI CATG 2 cut(s) 43, 250
FaiI YATR 4 cut(s) 35, 41, 107, 248
FaqI GGGAC 1 cut(s) 114
FatI CATG 2 cut(s) 39, 246
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 1 cut(s) 16
Fsp4HI GCNGC 1 cut(s) 16
GluI GCNGC 1 cut(s) 16
HaeIII GGCC 1 cut(s) 126
HapII CCGG 3 cut(s) 111, 122, 127
Hin1II CATG 2 cut(s) 43, 250
HpaII CCGG 3 cut(s) 111, 122, 127
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 2 cut(s) 46, 89
Hpy188III TCNNGA 1 cut(s) 285
Hpy8I GTNNAC 1 cut(s) 258
Hpy99I CGWCG 1 cut(s) 89
HpyCH4V TGCA 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 261
Hsp92II CATG 2 cut(s) 43, 250
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 226
Lsp1109I GCAGC 1 cut(s) 27
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 5 cut(s) 65, 68, 149, 201, 204
MflI RGATCY 1 cut(s) 58
MluCI AATT 1 cut(s) 280
MmeI TCCRAC 2 cut(s) 24, 67
MnlI CCTC 2 cut(s) 108, 141
MseI TTAA 2 cut(s) 158, 231
MslI CAYNNNNRTG 1 cut(s) 38
MspI CCGG 3 cut(s) 111, 122, 127
MspR9I CCNGG 3 cut(s) 112, 123, 224
MvaI CCWGG 1 cut(s) 224
NciI CCSGG 2 cut(s) 112, 123
NdeII GATC 1 cut(s) 58
NlaIII CATG 2 cut(s) 43, 250
NspI RCATGY 1 cut(s) 43
PciI ACATGT 1 cut(s) 39
PkrI GCNGC 1 cut(s) 17
PscI ACATGT 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspPI GGNCC 1 cut(s) 124
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 2 cut(s) 77, 212
RsaNI GTAC 2 cut(s) 76, 211
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 2 cut(s) 158, 231
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 1 cut(s) 58
Sau96I GGNCC 1 cut(s) 124
ScrFI CCNGG 3 cut(s) 112, 123, 224
SetI ASST 5 cut(s) 12, 84, 98, 152, 231
SmiMI CAYNNNNRTG 1 cut(s) 38
Sse9I AATT 1 cut(s) 280
StyD4I CCNGG 3 cut(s) 110, 121, 222
TasI AATT 1 cut(s) 280
TatI WGTACW 1 cut(s) 75
Tru1I TTAA 2 cut(s) 158, 231
Tru9I TTAA 2 cut(s) 158, 231
TseI GCWGC 1 cut(s) 15
TspDTI ATGAA 2 cut(s) 22, 263
TspGWI ACGGA 1 cut(s) 183
XceI RCATGY 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.