Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008623

Physical Location & Seq

Genomic Coordinates Forward (+)

19148662 .. 19151080

Gene Structure 2419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGTGAAAGAAATAGATGGTGTGAGGAAAAACGAGAAGAAGAAGAGGAATGAAGGAATAAGTGAGATTGAGAAGAACACGAAAGCTATATTGGATCAAGTTGGTTTAGTGGATGCTCTTGATAATTGGTTCGATGGAGTTCTCACCATCGGCACATTTGGCTTTGACACCTTGAACTTCAAAGAAGAAGATGAAATGGATGATGATGAATGCGGGAGTGGGGATCTCGACTACGTCGTAATTGATGGCAGCATCATCAAGAACGTCGACCAAGAGTCGGATCCTCTTATCTCCGTTGAAAATAAGTTTTATGATCATCATGAAGATGTCGGGAATCTGTACGTACAGGCCGATACTGATCACTTTGGCTCGATCAAAACCGCTGAAACGCCAGCTGTCACGGCGGCAGCCGAGGCCGAGATAGAGCCACAGAAGAAGAGGACAACACTTGCGGAGCTTTTCATGGAGGACCACGACAAAGGTTATGACACGTGGCATTGCAAGAAACCCAATAACCCTAATCTTGACGGTGAGGAGGTTAAGTACTATAAACAAAACGGTTCAAAACTAAGCAAGAGGTTCTCGTTTGTTAAGAAGAAGCTGGTCATGTCAAAGTCCAAAGAGGAAGAAAACGACTTACGTCCAATCAAGAAAATGCGTCAGATGATAAAGAGGATGTTGAAGAAGAAGATCCATCCAGATGTCGATGCAACTAAGGCTTTAAAGAAGGACGTTCCATACAAGCCAACTCGGAACTGTGAAGCTCTCGAGTCACATTATCTTCTTAAAATTCAAGATTGCGTGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

30.78

Weight (kDa)

5.42

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46640 AT2G46640 AT2G46640 AT2G46640
fragaria_vesca	FvH4_7g17280
malus_domestica	MD00G1035800.v1.1 MD07G1155200.v1.1
prunus_persica	Prupe.2G194000_v2.0.a1
pyrus_communis	pycom01g10970 pycom01g10980 pycom07g15250
rosa_chinensis	RchiOBHm_Chr1g0360641
rosa_laevigata	RLG00000027791
rosa_multiflora	Rmu_sc0001910.1_g000004
rosa_roxburghii	Rroxscaffold_4G00295930
rosa_rugosa	Rorug01G0280600 Rorug01G0280700 Rorug01G0280800.1
rosa_samantha	Rh1AG292700 Rh1BG257400 Rh1CG275200 Rh1DG287300
rosa_wichuraiana	Rw1G025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	4 cut(s)	213, 381, 404, 452
AclWI	GGATC	5 cut(s)	102, 231, 275, 288, 685
AcsI	RAATTY	1 cut(s)	789
AcvI	CACGTG	1 cut(s)	492
AfaI	GTAC	3 cut(s)	341, 345, 545
AfiI	CCNNNNNNNGG	1 cut(s)	277
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	6 cut(s)	175, 181, 299, 564, 682, 794
AhdI	GACNNNNNGTC	1 cut(s)	274
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	5 cut(s)	86, 395, 457, 601, 764
AluI	AGCT	5 cut(s)	86, 395, 457, 601, 764
AlwI	GGATC	5 cut(s)	102, 231, 275, 288, 685
Ama87I	CYCGRG	1 cut(s)	767
AoxI	GGCC	3 cut(s)	348, 414, 804
ApeKI	GCWGC	2 cut(s)	249, 407
ApoI	RAATTY	1 cut(s)	789
AspS9I	GGNCC	1 cut(s)	469
AsuHPI	GGTGA	3 cut(s)	16, 136, 542
AvaI	CYCGRG	1 cut(s)	767
AvaII	GGWCC	1 cut(s)	469
BamHI	GGATCC	1 cut(s)	280
BbrPI	CACGTG	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	261, 419
BccI	CCATC	5 cut(s)	11, 128, 155, 239, 702
BceAI	ACGGC	1 cut(s)	417
BclI	TGATCA	2 cut(s)	313, 358
BfaI	CTAG	1 cut(s)	808
BisI	GCNGC	3 cut(s)	250, 405, 408
BlsI	GCNGC	3 cut(s)	251, 406, 409
BmcAI	AGTACT	1 cut(s)	545
Bme18I	GGWCC	1 cut(s)	469
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	767
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	1 cut(s)	282
BmsI	GCATC	3 cut(s)	103, 261, 697
BoxI	GACNNNNGTC	1 cut(s)	639
BsaAI	YACGTR	2 cut(s)	343, 492
BsaBI	GATNNNNATC	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	411
BsaXI	ACNNNNNCTCC	2 cut(s)	527, 557
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	496
Bse8I	GATNNNNATC	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	4 cut(s)	118, 205, 681, 694
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	496
BseRI	GAGGAG	1 cut(s)	548
BseXI	GCAGC	2 cut(s)	261, 419
BshFI	GGCC	3 cut(s)	350, 416, 806
BsiHKCI	CYCGRG	1 cut(s)	767
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	3 cut(s)	350, 416, 806
BsoBI	CYCGRG	1 cut(s)	767
Bsp143I	GATC	7 cut(s)	94, 223, 280, 313, 358, 372, 690
BspACI	CCGC	4 cut(s)	213, 381, 404, 452
BspANI	GGCC	3 cut(s)	350, 416, 806
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	5 cut(s)	102, 231, 275, 288, 685
BsrDI	GCAATG	1 cut(s)	496
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	7 cut(s)	94, 223, 280, 313, 358, 372, 690
Bst4CI	ACNGT	3 cut(s)	530, 560, 758
Bst6I	CTCTTC	2 cut(s)	38, 431
BstBAI	YACGTR	2 cut(s)	343, 492
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	2 cut(s)	569, 714
BstF5I	GGATG	4 cut(s)	118, 205, 681, 694
BstKTI	GATC	7 cut(s)	97, 226, 283, 316, 361, 375, 693
BstMBI	GATC	7 cut(s)	94, 223, 280, 313, 358, 372, 690
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 401, 413, 716
BstPAI	GACNNNNGTC	1 cut(s)	639
BstSNI	TACGTA	1 cut(s)	343
BstV1I	GCAGC	2 cut(s)	261, 419
BstX2I	RGATCY	3 cut(s)	223, 280, 690
BstYI	RGATCY	3 cut(s)	223, 280, 690
BsuRI	GGCC	3 cut(s)	350, 416, 806
BtsCI	GGATG	4 cut(s)	118, 205, 681, 694
Cac8I	GCNNGC	1 cut(s)	393
CciI	TCATGA	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	469
CseI	GACGC	1 cut(s)	647
Csp6I	GTAC	3 cut(s)	340, 344, 544
CviAII	CATG	3 cut(s)	320, 463, 607
CviQI	GTAC	3 cut(s)	340, 344, 544
DdeI	CTNAG	2 cut(s)	569, 714
DpnI	GATC	7 cut(s)	96, 225, 282, 315, 360, 374, 692
DpnII	GATC	7 cut(s)	94, 223, 280, 313, 358, 372, 690
DraI	TTTAAA	1 cut(s)	723
DriI	GACNNNNNGTC	1 cut(s)	274
Eam1104I	CTCTTC	2 cut(s)	38, 431
Eam1105I	GACNNNNNGTC	1 cut(s)	274
EarI	CTCTTC	2 cut(s)	38, 431
Eco105I	TACGTA	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	469
Eco72I	CACGTG	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	767
FaeI	CATG	3 cut(s)	323, 466, 610
FaiI	YATR	8 cut(s)	89, 312, 321, 464, 486, 549, 608, 739
FatI	CATG	3 cut(s)	319, 462, 606
FauI	CCCGC	1 cut(s)	206
FbaI	TGATCA	2 cut(s)	313, 358
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	3 cut(s)	250, 405, 408
FokI	GGATG	4 cut(s)	125, 212, 681, 688
Fsp4HI	GCNGC	3 cut(s)	250, 405, 408
FspBI	CTAG	1 cut(s)	808
GluI	GCNGC	3 cut(s)	250, 405, 408
HaeIII	GGCC	3 cut(s)	350, 416, 806
HgaI	GACGC	1 cut(s)	647
Hin1II	CATG	3 cut(s)	323, 466, 610
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	3 cut(s)	275, 334, 770
HphI	GGTGA	3 cut(s)	16, 136, 542
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	3 cut(s)	280, 663, 753
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	2 cut(s)	239, 269
HpyAV	CCTTC	2 cut(s)	47, 721
HpyCH4III	ACNGT	3 cut(s)	530, 560, 758
HpyCH4IV	ACGT	6 cut(s)	234, 264, 342, 491, 640, 732
HpyCH4V	TGCA	2 cut(s)	501, 710
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 401, 413, 716
HpyF3I	CTNAG	2 cut(s)	569, 714
HpySE526I	ACGT	6 cut(s)	234, 264, 342, 491, 640, 732
Hsp92II	CATG	3 cut(s)	323, 466, 610
Ksp22I	TGATCA	2 cut(s)	313, 358
Kzo9I	GATC	7 cut(s)	94, 223, 280, 313, 358, 372, 690
LmnI	GCTCC	1 cut(s)	454
LpnPI	CCDG	4 cut(s)	332, 405, 587, 711
Lsp1109I	GCAGC	2 cut(s)	261, 419
LweI	GCATC	3 cut(s)	103, 261, 697
MaeI	CTAG	1 cut(s)	808
MaeII	ACGT	6 cut(s)	234, 264, 342, 491, 640, 732
MaeIII	GTNAC	2 cut(s)	397, 771
MalI	GATC	7 cut(s)	96, 225, 282, 315, 360, 374, 692
MboI	GATC	7 cut(s)	94, 223, 280, 313, 358, 372, 690
MflI	RGATCY	3 cut(s)	223, 280, 690
MluCI	AATT	3 cut(s)	124, 240, 789
MlyI	GAGTC	2 cut(s)	284, 779
MmeI	TCCRAC	1 cut(s)	258
MseI	TTAA	4 cut(s)	540, 591, 722, 786
MslI	CAYNNNNRTG	2 cut(s)	324, 699
MspA1I	CMGCKG	2 cut(s)	383, 395
Mva1269I	GAATGC	1 cut(s)	215
MwoI	GCNNNNNNNGC	4 cut(s)	159, 401, 413, 716
NdeII	GATC	7 cut(s)	94, 223, 280, 313, 358, 372, 690
NlaIII	CATG	3 cut(s)	323, 466, 610
NlaIV	GGNNCC	1 cut(s)	282
NmeAIII	GCCGAG	2 cut(s)	436, 442
NmuCI	GTSAC	2 cut(s)	397, 771
PaeR7I	CTCGAG	1 cut(s)	767
PagI	TCATGA	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	2 cut(s)	234, 348
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	334
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	3 cut(s)	251, 406, 409
PleI	GAGTC	2 cut(s)	283, 778
PmaCI	CACGTG	1 cut(s)	492
PmlI	CACGTG	1 cut(s)	492
PpsI	GAGTC	2 cut(s)	283, 778
Ppu21I	YACGTR	2 cut(s)	343, 492
PshAI	GACNNNNGTC	1 cut(s)	639
PspCI	CACGTG	1 cut(s)	492
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	469
PsuI	RGATCY	3 cut(s)	223, 280, 690
PsyI	GACNNNGTC	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	3 cut(s)	341, 345, 545
RsaNI	GTAC	3 cut(s)	340, 344, 544
RseI	CAYNNNNRTG	2 cut(s)	324, 699
SalI	GTCGAC	1 cut(s)	266
SaqAI	TTAA	4 cut(s)	540, 591, 722, 786
SatI	GCNGC	3 cut(s)	250, 405, 408
Sau3AI	GATC	7 cut(s)	94, 223, 280, 313, 358, 372, 690
Sau96I	GGNCC	1 cut(s)	469
ScaI	AGTACT	1 cut(s)	545
SchI	GAGTC	2 cut(s)	284, 779
SfaNI	GCATC	3 cut(s)	103, 261, 697
Sfr274I	CTCGAG	1 cut(s)	767
SinI	GGWCC	1 cut(s)	469
SlaI	CTCGAG	1 cut(s)	767
SmiMI	CAYNNNNRTG	2 cut(s)	324, 699
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
SnaBI	TACGTA	1 cut(s)	343
Sse9I	AATT	3 cut(s)	124, 240, 789
SsiI	CCGC	4 cut(s)	213, 381, 404, 452
SspMI	CTAG	1 cut(s)	808
TaaI	ACNGT	3 cut(s)	530, 560, 758
TaiI	ACGT	6 cut(s)	237, 267, 345, 494, 643, 735
TaqI	TCGA	6 cut(s)	132, 228, 267, 371, 705, 768
TasI	AATT	3 cut(s)	124, 240, 789
TatI	WGTACW	1 cut(s)	543
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	4 cut(s)	540, 591, 722, 786
Tru9I	TTAA	4 cut(s)	540, 591, 722, 786
TseFI	GTSAC	2 cut(s)	397, 771
TseI	GCWGC	2 cut(s)	249, 407
Tsp45I	GTSAC	2 cut(s)	397, 771
TspDTI	ATGAA	5 cut(s)	66, 207, 222, 336, 451
TspGWI	ACGGA	1 cut(s)	283
Tth111I	GACNNNGTC	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	1 cut(s)	789
XhoI	CTCGAG	1 cut(s)	767
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	1 cut(s)	808
ZrmI	AGTACT	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.