Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008623

Physical Location & Seq

Genomic Coordinates Forward (+)

17421214 .. 17424614

Gene Structure 3401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g15250.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAAGATCTTCAACTGGGTTCATAAGCGGCTTCATCACAAAGATGGATTTTCTGGAAGTGTGAAAAAGACTGAACTGGAAATGGAAACCAATGACAAGGGCACACAAGCATTTCTCAAGCAAGTCGGGCTTGTTGATGTTGACGGGCTTGACGGCTGGAGGGAGGGCATTTTAACGATAGGTACCTTCGGTTTCAATCCTCTAAAATCCTTCAACCAGAACGAATATTTTGTTTTGGAGAGCGAAGAGGACGATCAGGAAAACAATGGATTTTCACACAGTGATAATGATGACGACAATGATGAACATTATGATGATAATTTTGGAGATGAAGAACTGAATCCTTTAATGTTTAAAACATTTGGACACAGTTTTGAGGACGTTGGGTCAAACTCCGATGCCATTGAGAAACCAGCTGATGATGATCATGCCATCTTGACCGTTGGTGGTGTTCCTCTTACACCATTTGAAGGGTCCCACTATGAAATCAGTATTGCGTCACCTGATCTGTACTGTTCCGAGATCACCGATGAAGATCAAAGGAAGAAGAGAGGTCAAAGAATAACCCTAGCTGACCTATTCCAGGCTGATCATGTTCATGATGTTGGTCAACTGAATCTTGACTCCTGCAAAGTCCAGCCAGAAATGCAGAAAAAGGTGAATGTGGGAACAAAGAGTGGCCTAGCATTTGCCAAGAAGCTCATTCCTCGCGTCAAAGAGGATTCAAGTCCAATAAAAAATCTGCAACGACTGATGAGGAGGATGTTGAAGAGGAAGATCCATCCAGCTGAGCTTGATGTCAATGTTCACAAATCAGATGGCCTGAAGCAGCCCCGTGCAGTAGAACTCATCACCAATGTTGAAAGTGATGCCTCTGACTCAGTTTCTTTGCTTCCAATTCAAGGTGCTACTGCTTGTGTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

34.55

Weight (kDa)

5.0

Isoelectric Point (pI)

35.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46640 AT2G46640 AT2G46640 AT2G46640
fragaria_vesca	FvH4_7g17280
malus_domestica	MD00G1035800.v1.1 MD07G1155200.v1.1
prunus_persica	Prupe.2G194000_v2.0.a1
pyrus_communis	pycom01g10970 pycom01g10980 pycom07g15250
rosa_chinensis	RchiOBHm_Chr1g0360641
rosa_laevigata	RLG00000027791
rosa_multiflora	Rmu_sc0001910.1_g000004
rosa_roxburghii	Rroxscaffold_4G00295930
rosa_rugosa	Rorug01G0280600 Rorug01G0280700 Rorug01G0280800.1
rosa_samantha	Rh1AG292700 Rh1BG257400 Rh1CG275200 Rh1DG287300
rosa_wichuraiana	Rw1G025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	182
AccB1I	GGYRCC	1 cut(s)	182
AccII	CGCG	1 cut(s)	711
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	1 cut(s)	772
AcuI	CTGAAG	1 cut(s)	845
AdeI	CACNNNGTG	1 cut(s)	281
AfaI	GTAC	2 cut(s)	184, 512
AfiI	CCNNNNNNNGG	3 cut(s)	470, 583, 902
AgsI	TTSAA	8 cut(s)	13, 196, 214, 470, 726, 769, 863, 902
AhdI	GACNNNNNGTC	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	582
AluBI	AGCT	5 cut(s)	416, 572, 700, 788, 793
AluI	AGCT	5 cut(s)	416, 572, 700, 788, 793
AlwI	GGATC	1 cut(s)	772
AoxI	GGCC	2 cut(s)	679, 820
ApeKI	GCWGC	1 cut(s)	829
Asp700I	GAANNNNTTC	1 cut(s)	8
Asp718I	GGTACC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	474
AsuHPI	GGTGA	4 cut(s)	492, 517, 670, 844
AvaII	GGWCC	1 cut(s)	474
BaeGI	GKGCMC	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	841
BccI	CCATC	4 cut(s)	38, 440, 789, 812
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	584
BclI	TGATCA	2 cut(s)	424, 589
BfaI	CTAG	2 cut(s)	569, 683
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	2 cut(s)	29, 830
BlpI	GCTNAGC	1 cut(s)	789
BlsI	GCNGC	2 cut(s)	30, 831
Bme1390I	CCNGG	1 cut(s)	584
Bme18I	GGWCC	1 cut(s)	474
BmeRI	GACNNNNNGTC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	474
BmiI	GGNNCC	3 cut(s)	184, 475, 476
BmrFI	CCNGG	1 cut(s)	584
BmrI	ACTGGG	1 cut(s)	25
BmsI	GCATC	2 cut(s)	388, 859
BmuI	ACTGGG	1 cut(s)	25
BpmI	CTGGAG	1 cut(s)	178
Bpu1102I	GCTNAGC	1 cut(s)	789
BpuEI	CTTGAG	1 cut(s)	101
BsaBI	GATNNNNATC	2 cut(s)	423, 534
Bsc4I	CCNNNNNNNGG	3 cut(s)	470, 583, 902
Bse1I	ACTGG	2 cut(s)	20, 81
Bse8I	GATNNNNATC	2 cut(s)	423, 534
BseBI	CCWGG	1 cut(s)	584
BseGI	GGATG	2 cut(s)	768, 781
BseJI	GATNNNNATC	2 cut(s)	423, 534
BseLI	CCNNNNNNNGG	3 cut(s)	470, 583, 902
BseMII	CTCAG	2 cut(s)	780, 894
BseNI	ACTGG	2 cut(s)	20, 81
BseRI	GAGGAG	1 cut(s)	772
BseSI	GKGCMC	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	841
BsgI	GTGCAG	1 cut(s)	858
Bsh1236I	CGCG	1 cut(s)	711
BshFI	GGCC	2 cut(s)	681, 822
BshNI	GGYRCC	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	3 cut(s)	470, 583, 902
BsmFI	GGGAC	1 cut(s)	460
BsnI	GGCC	2 cut(s)	681, 822
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	8 cut(s)	6, 253, 424, 505, 522, 535, 589, 777
Bsp1720I	GCTNAGC	1 cut(s)	789
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	2 cut(s)	681, 822
BspCNI	CTCAG	2 cut(s)	781, 893
BspFNI	CGCG	1 cut(s)	711
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	3 cut(s)	184, 475, 476
BspPI	GGATC	1 cut(s)	772
BspT107I	GGYRCC	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	20, 81
BssMI	GATC	8 cut(s)	6, 253, 424, 505, 522, 535, 589, 777
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	4 cut(s)	281, 371, 442, 515
Bst6I	CTCTTC	3 cut(s)	240, 542, 764
BstDEI	CTNAG	2 cut(s)	789, 880
BstENI	CCTNNNNNAGG	1 cut(s)	581
BstF5I	GGATG	2 cut(s)	768, 781
BstFNI	CGCG	1 cut(s)	711
BstKTI	GATC	8 cut(s)	9, 256, 427, 508, 525, 538, 592, 780
BstMBI	GATC	8 cut(s)	6, 253, 424, 505, 522, 535, 589, 777
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 646
BstNI	CCWGG	1 cut(s)	584
BstSCI	CCNGG	1 cut(s)	582
BstSLI	GKGCMC	1 cut(s)	104
BstUI	CGCG	1 cut(s)	711
BstV1I	GCAGC	1 cut(s)	841
BstX2I	RGATCY	2 cut(s)	6, 777
BstYI	RGATCY	2 cut(s)	6, 777
BsuRI	GGCC	2 cut(s)	681, 822
BtsCI	GGATG	2 cut(s)	768, 781
BtsIMutI	CAGTG	1 cut(s)	286
CciI	TCATGA	1 cut(s)	598
Cfr13I	GGNCC	1 cut(s)	474
CseI	GACGC	2 cut(s)	486, 700
Csp6I	GTAC	2 cut(s)	183, 511
CviAII	CATG	3 cut(s)	428, 593, 599
CviQI	GTAC	2 cut(s)	183, 511
DdeI	CTNAG	2 cut(s)	789, 880
DpnI	GATC	8 cut(s)	8, 255, 426, 507, 524, 537, 591, 779
DpnII	GATC	8 cut(s)	6, 253, 424, 505, 522, 535, 589, 777
DraI	TTTAAA	1 cut(s)	355
DraIII	CACNNNGTG	1 cut(s)	281
DriI	GACNNNNNGTC	1 cut(s)	385
Eam1104I	CTCTTC	3 cut(s)	240, 542, 764
Eam1105I	GACNNNNNGTC	1 cut(s)	385
EarI	CTCTTC	3 cut(s)	240, 542, 764
Eco47I	GGWCC	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	845
EcoNI	CCTNNNNNAGG	1 cut(s)	581
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	582
FaeI	CATG	3 cut(s)	431, 596, 602
FaiI	YATR	6 cut(s)	24, 312, 429, 483, 594, 600
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	3 cut(s)	427, 592, 598
FbaI	TGATCA	2 cut(s)	424, 589
Fnu4HI	GCNGC	2 cut(s)	29, 830
FokI	GGATG	2 cut(s)	768, 775
Fsp4HI	GCNGC	2 cut(s)	29, 830
FspBI	CTAG	2 cut(s)	569, 683
GluI	GCNGC	2 cut(s)	29, 830
GsuI	CTGGAG	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	681, 822
HgaI	GACGC	2 cut(s)	486, 700
Hin1II	CATG	3 cut(s)	431, 596, 602
HincII	GTYRAC	2 cut(s)	142, 611
HindII	GTYRAC	2 cut(s)	142, 611
HinfI	GANTC	5 cut(s)	340, 616, 623, 722, 878
HphI	GGTGA	4 cut(s)	492, 517, 670, 844
Hpy166II	GTNNAC	3 cut(s)	142, 611, 808
Hpy188I	TCNGA	4 cut(s)	397, 520, 817, 877
Hpy188III	TCNNGA	5 cut(s)	54, 257, 436, 599, 620
Hpy8I	GTNNAC	3 cut(s)	142, 611, 808
HpyAV	CCTTC	3 cut(s)	196, 220, 464
HpyCH4III	ACNGT	4 cut(s)	281, 371, 442, 515
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	4 cut(s)	630, 649, 745, 839
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 646
HpyF3I	CTNAG	2 cut(s)	789, 880
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	3 cut(s)	431, 596, 602
KflI	GGGWCCC	1 cut(s)	474
KpnI	GGTACC	1 cut(s)	186
Ksp22I	TGATCA	2 cut(s)	424, 589
Kzo9I	GATC	8 cut(s)	6, 253, 424, 505, 522, 535, 589, 777
Lsp1109I	GCAGC	1 cut(s)	841
LweI	GCATC	2 cut(s)	388, 859
MaeI	CTAG	2 cut(s)	569, 683
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	498
MalI	GATC	8 cut(s)	8, 255, 426, 507, 524, 537, 591, 779
MboI	GATC	8 cut(s)	6, 253, 424, 505, 522, 535, 589, 777
MboII	GAAGA	8 cut(s)	16, 257, 344, 545, 556, 559, 781, 787
MflI	RGATCY	2 cut(s)	6, 777
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	2 cut(s)	319, 897
MlyI	GAGTC	2 cut(s)	617, 872
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	3 cut(s)	173, 347, 354
MslI	CAYNNNNRTG	3 cut(s)	42, 312, 597
MspA1I	CMGCKG	2 cut(s)	416, 788
MspR9I	CCNGG	1 cut(s)	584
MvaI	CCWGG	1 cut(s)	584
MvnI	CGCG	1 cut(s)	711
MwoI	GCNNNNNNNGC	2 cut(s)	127, 646
NdeII	GATC	8 cut(s)	6, 253, 424, 505, 522, 535, 589, 777
NlaIII	CATG	3 cut(s)	431, 596, 602
NlaIV	GGNNCC	3 cut(s)	184, 475, 476
NmuCI	GTSAC	1 cut(s)	498
PagI	TCATGA	1 cut(s)	598
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	340, 616, 722
PkrI	GCNGC	2 cut(s)	30, 831
PleI	GAGTC	2 cut(s)	617, 872
PpsI	GAGTC	2 cut(s)	617, 872
PpuMI	RGGWCCY	1 cut(s)	474
Psp5II	RGGWCCY	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	582
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	3 cut(s)	184, 475, 476
PspPI	GGNCC	1 cut(s)	474
PspPPI	RGGWCCY	1 cut(s)	474
PsuI	RGATCY	2 cut(s)	6, 777
PvuII	CAGCTG	2 cut(s)	416, 788
RsaI	GTAC	2 cut(s)	184, 512
RsaNI	GTAC	2 cut(s)	183, 511
RseI	CAYNNNNRTG	3 cut(s)	42, 312, 597
SaqAI	TTAA	3 cut(s)	173, 347, 354
SatI	GCNGC	2 cut(s)	29, 830
Sau3AI	GATC	8 cut(s)	6, 253, 424, 505, 522, 535, 589, 777
Sau96I	GGNCC	1 cut(s)	474
SchI	GAGTC	2 cut(s)	617, 872
ScrFI	CCNGG	1 cut(s)	584
SduI	GDGCHC	1 cut(s)	104
SfaNI	GCATC	2 cut(s)	388, 859
SinI	GGWCC	1 cut(s)	474
SmiMI	CAYNNNNRTG	3 cut(s)	42, 312, 597
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	2 cut(s)	319, 897
SsiI	CCGC	1 cut(s)	28
SspI	AATATT	1 cut(s)	227
SspMI	CTAG	2 cut(s)	569, 683
StyD4I	CCNGG	1 cut(s)	582
TaaI	ACNGT	4 cut(s)	281, 371, 442, 515
TaiI	ACGT	1 cut(s)	384
TasI	AATT	2 cut(s)	319, 897
TatI	WGTACW	1 cut(s)	510
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	3 cut(s)	340, 616, 722
Tru1I	TTAA	3 cut(s)	173, 347, 354
Tru9I	TTAA	3 cut(s)	173, 347, 354
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	498
TseI	GCWGC	1 cut(s)	829
Tsp45I	GTSAC	1 cut(s)	498
TspDTI	ATGAA	8 cut(s)	11, 17, 23, 318, 345, 498, 546, 587
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	474
XagI	CCTNNNNNAGG	1 cut(s)	581
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	569, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.