Rw1G025900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0008623
Physical Location & Seq
Forward (+)
52721048 .. 52723491
2444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G025900.1

Sequence Viewer

Length: 1044 bp
ATGTCATTTACCCACAAACATAGCTACATTCTAGGGGCCCCACTCCTAGGCACGTGTCACCATCTCATTCTCCAACCCACTTGGCCCGCTCCTTTTAAGTTTCTTCTACTCCATAATTATTCCATTCAGCTTCAATTTATACTCATCATTCTCTTGCCCACCAATTCTCTCATCTTCAACTGGGTTCATAAGAGGTTTCATCACAAGGTCCTTAAAGATGAGGTTGCAGGAAATGGGGAAAAGATTGAACCGGAGAGTAATACCGATAAGGACACACAAGCATTTCTGAGACAAGTTTCCCTTGTGGATGGGCTTGATCAGGGATGGAGAGATGGCATTTTAACAATAGGCACCTTTGGTTTCGACCCCCTAAAACCCTTCAACAACCAAAATGACTACACGGTTTTGGAGAGCGAGGAGGATGGTAAGGAAGCCCAAGAAGTTTCACATGGTGGTGATGATTGTGACAGTGATGAAGATACTGATAATGGCGAGTATGAAGAACTGAACCCTTTGATGTTTACAACATTTGGACACAGTTTTGAGGAAACGGAGTCAAACTCTGAGGCCATTGTTGCGAAACCAGATGTGATTTTGGACATCGATGGTGTTCCTCTTGCTCCTTTTGAGGGGTCTAATGAAATCAGTAGTGAACCTGATCACGATTCTGAGAGTGATCAAAGGAAGCGCAAAGGTGAAAGGATAACACTGGCTGACTTATTCATGGCTGATGGTCATGATGTTCAATCGCAGCTTGACTCTCGCAAGGTCCAACCAGAGTTGAAGAAGAAAATGAACCCTCGAACAAGGAATGGTGGCCTGGCATTTGCCAAGAAGCTCATTCCTCGTGTCAAAGAGGATTCAACTCCAATCAAGAATGTGCAAAGACTGATGAGGAGGATGTTGAAGAGGAAGATCCATCCAGCAGACCTTGATGTCAAGAAGCCTACTAGTGCAGTCGAACTTACCAGTACCAATGTCGAAACTGATGCTTCTGAATCGGTTTCTTTGCTTCCAATTCGAGGTGCCACTTCTGTGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

39.0

Weight (kDa)

5.26

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 935
AccB1I GGYRCC 2 cut(s) 350, 1025
AccBSI CCGCTC 1 cut(s) 89
AciI CCGC 1 cut(s) 87
AclWI GGATC 1 cut(s) 910
AcvI CACGTG 1 cut(s) 54
AdeI CACNNNGTG 1 cut(s) 452
AfaI GTAC 1 cut(s) 973
AfiI CCNNNNNNNGG 3 cut(s) 47, 629, 1022
AflIII ACRYGT 1 cut(s) 53
AgsI TTSAA 8 cut(s) 134, 178, 248, 382, 746, 784, 864, 907
AhlI ACTAGT 1 cut(s) 950
AjnI CCWGG 1 cut(s) 819
AleI CACNNNNGTG 1 cut(s) 1034
AluBI AGCT 4 cut(s) 24, 130, 754, 838
AluI AGCT 4 cut(s) 24, 130, 754, 838
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 1 cut(s) 910
AoxI GGCC 4 cut(s) 36, 83, 567, 817
ApaI GGGCCC 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 751
AspA2I CCTAGG 1 cut(s) 46
AspLEI GCGC 1 cut(s) 690
AspS9I GGNCC 5 cut(s) 36, 37, 84, 208, 769
AsuHPI GGTGA 3 cut(s) 50, 467, 707
AvaII GGWCC 2 cut(s) 208, 769
AvrII CCTAGG 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 40
BanI GGYRCC 2 cut(s) 350, 1025
BanII GRGCYC 1 cut(s) 40
BauI CACGAG 1 cut(s) 846
BbrPI CACGTG 1 cut(s) 54
BbvI GCAGC 1 cut(s) 763
BccI CCATC 8 cut(s) 69, 302, 318, 326, 416, 599, 725, 927
BcgI CGANNNNNNTGC 2 cut(s) 971, 1005
BciT130I CCWGG 1 cut(s) 821
BclI TGATCA 3 cut(s) 316, 658, 676
BcoDI GTCTC 1 cut(s) 283
BcuI ACTAGT 1 cut(s) 950
BfaI CTAG 3 cut(s) 32, 47, 951
BisI GCNGC 1 cut(s) 752
BlnI CCTAGG 1 cut(s) 46
BlsI GCNGC 1 cut(s) 753
Bme1390I CCNGG 1 cut(s) 821
Bme18I GGWCC 2 cut(s) 208, 769
BmgT120I GGNCC 5 cut(s) 36, 37, 84, 208, 769
BmiI GGNNCC 5 cut(s) 37, 38, 39, 352, 1027
BmrFI CCNGG 1 cut(s) 821
BmrI ACTGGG 1 cut(s) 190
BmsI GCATC 1 cut(s) 979
BmuI ACTGGG 1 cut(s) 190
BplI GAGNNNNNCTC 2 cut(s) 545, 577
Bsa29I ATCGAT 1 cut(s) 603
BsaAI YACGTR 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 46
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 629, 1022
Bse1I ACTGG 3 cut(s) 185, 714, 969
BseBI CCWGG 1 cut(s) 821
BseCI ATCGAT 1 cut(s) 603
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 5 cut(s) 313, 329, 427, 906, 919
BseLI CCNNNNNNNGG 3 cut(s) 47, 629, 1022
BseMII CTCAG 3 cut(s) 278, 555, 660
BseNI ACTGG 3 cut(s) 185, 714, 969
BseRI GAGGAG 2 cut(s) 431, 910
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 1 cut(s) 763
BsgI GTGCAG 1 cut(s) 975
BshFI GGCC 4 cut(s) 38, 85, 569, 819
BshNI GGYRCC 2 cut(s) 350, 1025
BshVI ATCGAT 1 cut(s) 603
BsiSI CCGG 1 cut(s) 251
BslI CCNNNNNNNGG 3 cut(s) 47, 629, 1022
BsmAI GTCTC 1 cut(s) 283
BsnI GGCC 4 cut(s) 38, 85, 569, 819
Bsp120I GGGCCC 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 4 cut(s) 316, 658, 676, 915
BspACI CCGC 1 cut(s) 87
BspANI GGCC 4 cut(s) 38, 85, 569, 819
BspCNI CTCAG 3 cut(s) 279, 556, 661
BspDI ATCGAT 1 cut(s) 603
BspHI TCATGA 1 cut(s) 736
BspLI GGNNCC 5 cut(s) 37, 38, 39, 352, 1027
BspPI GGATC 1 cut(s) 910
BspT107I GGYRCC 2 cut(s) 350, 1025
BsrBI CCGCTC 1 cut(s) 89
BsrI ACTGG 3 cut(s) 185, 714, 969
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 4 cut(s) 316, 658, 676, 915
BssSI CACGAG 1 cut(s) 846
BssT1I CCWWGG 1 cut(s) 46
Bst2BI CACGAG 1 cut(s) 846
Bst2UI CCWGG 1 cut(s) 821
Bst4CI ACNGT 3 cut(s) 403, 470, 539
Bst6I CTCTTC 1 cut(s) 902
BstBAI YACGTR 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 3 cut(s) 287, 564, 669
BstF5I GGATG 5 cut(s) 313, 329, 427, 906, 919
BstHHI GCGC 1 cut(s) 690
BstKTI GATC 4 cut(s) 319, 661, 679, 918
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 4 cut(s) 316, 658, 676, 915
BstMWI GCNNNNNNNGC 1 cut(s) 575
BstNI CCWGG 1 cut(s) 821
BstSCI CCNGG 1 cut(s) 819
BstSLI GKGCMC 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 763
BstX2I RGATCY 1 cut(s) 915
BstYI RGATCY 1 cut(s) 915
Bsu15I ATCGAT 1 cut(s) 603
BsuRI GGCC 4 cut(s) 38, 85, 569, 819
BsuTUI ATCGAT 1 cut(s) 603
BtsCI GGATG 5 cut(s) 313, 329, 427, 906, 919
BtsIMutI CAGTG 2 cut(s) 475, 707
Cac8I GCNNGC 1 cut(s) 87
CciI TCATGA 1 cut(s) 736
CfoI GCGC 1 cut(s) 690
Cfr13I GGNCC 5 cut(s) 36, 37, 84, 208, 769
ClaI ATCGAT 1 cut(s) 603
Csp6I GTAC 1 cut(s) 972
CviAII CATG 3 cut(s) 449, 724, 737
CviQI GTAC 1 cut(s) 972
DdeI CTNAG 3 cut(s) 287, 564, 669
DpnI GATC 4 cut(s) 318, 660, 678, 917
DpnII GATC 4 cut(s) 316, 658, 676, 915
DraIII CACNNNGTG 1 cut(s) 452
DrdI GACNNNNNNGTC 1 cut(s) 935
DseDI GACNNNNNNGTC 1 cut(s) 935
Eam1104I CTCTTC 1 cut(s) 902
EarI CTCTTC 1 cut(s) 902
Eco130I CCWWGG 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 40
Eco47I GGWCC 2 cut(s) 208, 769
Eco72I CACGTG 1 cut(s) 54
EcoO109I RGGNCCY 3 cut(s) 36, 37, 208
EcoRII CCWGG 1 cut(s) 819
EcoT14I CCWWGG 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 3 cut(s) 452, 727, 740
FaiI YATR 8 cut(s) 21, 114, 140, 189, 450, 498, 725, 738
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FatI CATG 3 cut(s) 448, 723, 736
FauI CCCGC 1 cut(s) 94
FbaI TGATCA 3 cut(s) 316, 658, 676
Fnu4HI GCNGC 1 cut(s) 752
FokI GGATG 5 cut(s) 320, 336, 434, 906, 913
FriOI GRGCYC 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 752
FspBI CTAG 3 cut(s) 32, 47, 951
GlaI GCGC 1 cut(s) 689
GluI GCNGC 1 cut(s) 752
HaeIII GGCC 4 cut(s) 38, 85, 569, 819
HapII CCGG 1 cut(s) 251
HhaI GCGC 1 cut(s) 690
Hin1II CATG 3 cut(s) 452, 727, 740
Hin6I GCGC 1 cut(s) 688
HinP1I GCGC 1 cut(s) 688
HinfI GANTC 5 cut(s) 554, 665, 758, 860, 998
HpaII CCGG 1 cut(s) 251
HphI GGTGA 3 cut(s) 50, 467, 707
Hpy166II GTNNAC 2 cut(s) 522, 653
Hpy188I TCNGA 4 cut(s) 288, 565, 670, 997
Hpy188III TCNNGA 4 cut(s) 662, 737, 874, 940
Hpy8I GTNNAC 2 cut(s) 522, 653
HpyAV CCTTC 1 cut(s) 388
HpyCH4III ACNGT 3 cut(s) 403, 470, 539
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 4 cut(s) 227, 883, 956, 1039
HpyF10VI GCNNNNNNNGC 1 cut(s) 575
HpyF3I CTNAG 3 cut(s) 287, 564, 669
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 3 cut(s) 452, 727, 740
HspAI GCGC 1 cut(s) 688
Ksp22I TGATCA 3 cut(s) 316, 658, 676
Kzo9I GATC 4 cut(s) 316, 658, 676, 915
LmnI GCTCC 2 cut(s) 94, 625
Lsp1109I GCAGC 1 cut(s) 763
LweI GCATC 1 cut(s) 979
MaeI CTAG 3 cut(s) 32, 47, 951
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 2 cut(s) 56, 464
MalI GATC 4 cut(s) 318, 660, 678, 917
MbiI CCGCTC 1 cut(s) 89
MboI GATC 4 cut(s) 316, 658, 676, 915
MboII GAAGA 8 cut(s) 95, 166, 488, 512, 796, 799, 919, 925
MflI RGATCY 1 cut(s) 915
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 4 cut(s) 115, 134, 163, 1017
MlyI GAGTC 2 cut(s) 563, 752
MmeI TCCRAC 2 cut(s) 97, 796
MseI TTAA 3 cut(s) 96, 213, 341
MslI CAYNNNNRTG 2 cut(s) 453, 1034
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 1 cut(s) 821
MvaI CCWGG 1 cut(s) 821
MwoI GCNNNNNNNGC 1 cut(s) 575
NdeII GATC 4 cut(s) 316, 658, 676, 915
NlaIII CATG 3 cut(s) 452, 727, 740
NlaIV GGNNCC 5 cut(s) 37, 38, 39, 352, 1027
NmuCI GTSAC 2 cut(s) 56, 464
OliI CACNNNNGTG 1 cut(s) 1034
PagI TCATGA 1 cut(s) 736
PfeI GAWTC 3 cut(s) 665, 860, 998
PkrI GCNGC 1 cut(s) 753
PleI GAGTC 2 cut(s) 562, 752
PmaCI CACGTG 1 cut(s) 54
PmlI CACGTG 1 cut(s) 54
PpsI GAGTC 2 cut(s) 562, 752
Ppu21I YACGTR 1 cut(s) 54
PpuMI RGGWCCY 1 cut(s) 208
Psp5II RGGWCCY 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 819
PspCI CACGTG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 819
PspN4I GGNNCC 5 cut(s) 37, 38, 39, 352, 1027
PspOMI GGGCCC 1 cut(s) 36
PspPI GGNCC 5 cut(s) 36, 37, 84, 208, 769
PspPPI RGGWCCY 1 cut(s) 208
PsuI RGATCY 1 cut(s) 915
RsaI GTAC 1 cut(s) 973
RsaNI GTAC 1 cut(s) 972
RseI CAYNNNNRTG 2 cut(s) 453, 1034
SaqAI TTAA 3 cut(s) 96, 213, 341
SatI GCNGC 1 cut(s) 752
Sau3AI GATC 4 cut(s) 316, 658, 676, 915
Sau96I GGNCC 5 cut(s) 36, 37, 84, 208, 769
SchI GAGTC 2 cut(s) 563, 752
ScrFI CCNGG 1 cut(s) 821
SduI GDGCHC 1 cut(s) 40
SfaNI GCATC 1 cut(s) 979
SinI GGWCC 2 cut(s) 208, 769
SmiMI CAYNNNNRTG 2 cut(s) 453, 1034
SpeI ACTAGT 1 cut(s) 950
Sse9I AATT 4 cut(s) 115, 134, 163, 1017
SsiI CCGC 1 cut(s) 87
SspMI CTAG 3 cut(s) 32, 47, 951
StyD4I CCNGG 1 cut(s) 819
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 3 cut(s) 403, 470, 539
TaiI ACGT 1 cut(s) 56
TaqI TCGA 6 cut(s) 363, 603, 802, 960, 981, 1021
TasI AATT 4 cut(s) 115, 134, 163, 1017
TfiI GAWTC 3 cut(s) 665, 860, 998
Tru1I TTAA 3 cut(s) 96, 213, 341
Tru9I TTAA 3 cut(s) 96, 213, 341
TscAI CASTG 2 cut(s) 475, 714
TseFI GTSAC 2 cut(s) 56, 464
TseI GCWGC 1 cut(s) 751
Tsp45I GTSAC 2 cut(s) 56, 464
TspDTI ATGAA 7 cut(s) 176, 188, 489, 513, 654, 712, 809
TspGWI ACGGA 1 cut(s) 566
TspRI CASTG 2 cut(s) 475, 714
VpaK11BI GGWCC 2 cut(s) 208, 769
XmaJI CCTAGG 1 cut(s) 46
XspI CTAG 3 cut(s) 32, 47, 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.