Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008623

Physical Location & Seq

Genomic Coordinates Forward (+)

54232934 .. 54235447

Gene Structure 2514 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG275200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAAGATCTTCAACTGGGTTCATAAGAGGTTTCATCACAAGGTCCTTAAAGATGAGGTTGCAGGAAATGGGGAAAAGATTGAACCGGAGAGTAATACCGATAAGGACACACAAGCATTTCTGAGACAAGTTTCCCTTGTGGATGGGCTTGATCAGGGATGGAGAGATGGCATTTTAACAATAGGCACCTTTGGTTTCGACCCCCTAAAACCCTTCAACAACCAAAATGACTACACGGTTTTGGAGAGCGAGGAGGATGGTAAGGAAGCCCAAGAAGTTTCACATGGTGGTGATGATTGTGACAGTGATGAAGATACTGATAATGGCGAGTATGAAGAACTGAACCCTTTGATGTTTACAACATTTGGACACAGTTTTGAGGAAACGGAGTCAAACTCTGAGGCCATTGTTGCGAAACCAGATGTGATTTTGGACATCGATGGTGTTCCTCTTGCTCCTTTTGAGGGGTCTAATGAAATCAGTAGTGAACCTGATCACGATTCTGAGAGTGATCAAAGGAAGCGCAAAGGTGAAAGGATAACACTGGCTGACTTATTCATGGCTGATGGTCATGATGTTCAATCGCAGCTTGACTCTCGCAAGGTCCAACCAGAGTTGAAGAAGAAAATGAACCCTCGAACAAGGAATGGTGGCCTGGCATTTGCCAAGAAGCTCATTCCTCGTGTCAAAGAGGATTCAACTCCAATCAAGAATGTGCAAAGACTGATGAGGAGGATGTTGAAGAGGAAGATCCATCCAGCAGACCTTGATGTCAAGAAGCCTACTAGTGCAGTCGAACTTACCAGTACCAATGTCGAAACTGATGCTTCTGAATCGGTTTCTTTGCTTCCAATTCGAGGTGCCACTTCTGTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

292

Amino Acids

32.73

Weight (kDa)

4.95

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46640 AT2G46640 AT2G46640 AT2G46640
fragaria_vesca	FvH4_7g17280
malus_domestica	MD00G1035800.v1.1 MD07G1155200.v1.1
prunus_persica	Prupe.2G194000_v2.0.a1
pyrus_communis	pycom01g10970 pycom01g10980 pycom07g15250
rosa_chinensis	RchiOBHm_Chr1g0360641
rosa_laevigata	RLG00000027791
rosa_multiflora	Rmu_sc0001910.1_g000004
rosa_roxburghii	Rroxscaffold_4G00295930
rosa_rugosa	Rorug01G0280600 Rorug01G0280700 Rorug01G0280800.1
rosa_samantha	Rh1AG292700 Rh1BG257400 Rh1CG275200 Rh1DG287300
rosa_wichuraiana	Rw1G025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	770
AccB1I	GGYRCC	2 cut(s)	185, 860
AclWI	GGATC	1 cut(s)	745
AdeI	CACNNNGTG	1 cut(s)	287
AfaI	GTAC	1 cut(s)	808
AfiI	CCNNNNNNNGG	2 cut(s)	464, 857
AgsI	TTSAA	7 cut(s)	13, 83, 217, 581, 619, 699, 742
AhlI	ACTAGT	1 cut(s)	785
AjnI	CCWGG	1 cut(s)	654
AleI	CACNNNNGTG	1 cut(s)	869
AluBI	AGCT	2 cut(s)	589, 673
AluI	AGCT	2 cut(s)	589, 673
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	1 cut(s)	745
AoxI	GGCC	2 cut(s)	402, 652
ApeKI	GCWGC	1 cut(s)	586
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	525
AspS9I	GGNCC	2 cut(s)	43, 604
AsuHPI	GGTGA	2 cut(s)	302, 542
AvaII	GGWCC	2 cut(s)	43, 604
BanI	GGYRCC	2 cut(s)	185, 860
BauI	CACGAG	1 cut(s)	681
BbvI	GCAGC	1 cut(s)	598
BccI	CCATC	7 cut(s)	137, 153, 161, 251, 434, 560, 762
BcgI	CGANNNNNNTGC	2 cut(s)	806, 840
BciT130I	CCWGG	1 cut(s)	656
BclI	TGATCA	3 cut(s)	151, 493, 511
BcoDI	GTCTC	1 cut(s)	118
BcuI	ACTAGT	1 cut(s)	785
BfaI	CTAG	1 cut(s)	786
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	1 cut(s)	587
BlsI	GCNGC	1 cut(s)	588
Bme1390I	CCNGG	1 cut(s)	656
Bme18I	GGWCC	2 cut(s)	43, 604
BmgT120I	GGNCC	2 cut(s)	43, 604
BmiI	GGNNCC	2 cut(s)	187, 862
BmrFI	CCNGG	1 cut(s)	656
BmrI	ACTGGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	814
BmuI	ACTGGG	1 cut(s)	25
BplI	GAGNNNNNCTC	2 cut(s)	380, 412
Bsa29I	ATCGAT	1 cut(s)	438
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	2 cut(s)	464, 857
Bse1I	ACTGG	3 cut(s)	20, 549, 804
BseBI	CCWGG	1 cut(s)	656
BseCI	ATCGAT	1 cut(s)	438
BseGI	GGATG	5 cut(s)	148, 164, 262, 741, 754
BseLI	CCNNNNNNNGG	2 cut(s)	464, 857
BseMII	CTCAG	3 cut(s)	113, 390, 495
BseNI	ACTGG	3 cut(s)	20, 549, 804
BseRI	GAGGAG	2 cut(s)	266, 745
BseXI	GCAGC	1 cut(s)	598
BsgI	GTGCAG	1 cut(s)	810
BshFI	GGCC	2 cut(s)	404, 654
BshNI	GGYRCC	2 cut(s)	185, 860
BshVI	ATCGAT	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	86
BslI	CCNNNNNNNGG	2 cut(s)	464, 857
BsmAI	GTCTC	1 cut(s)	118
BsnI	GGCC	2 cut(s)	404, 654
Bsp143I	GATC	5 cut(s)	6, 151, 493, 511, 750
BspANI	GGCC	2 cut(s)	404, 654
BspCNI	CTCAG	3 cut(s)	114, 391, 496
BspDI	ATCGAT	1 cut(s)	438
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	2 cut(s)	187, 862
BspPI	GGATC	1 cut(s)	745
BspT107I	GGYRCC	2 cut(s)	185, 860
BsrI	ACTGG	3 cut(s)	20, 549, 804
BssMI	GATC	5 cut(s)	6, 151, 493, 511, 750
BssSI	CACGAG	1 cut(s)	681
Bst2BI	CACGAG	1 cut(s)	681
Bst2UI	CCWGG	1 cut(s)	656
Bst4CI	ACNGT	3 cut(s)	238, 305, 374
Bst6I	CTCTTC	1 cut(s)	737
BstDEI	CTNAG	3 cut(s)	122, 399, 504
BstF5I	GGATG	5 cut(s)	148, 164, 262, 741, 754
BstHHI	GCGC	1 cut(s)	525
BstKTI	GATC	5 cut(s)	9, 154, 496, 514, 753
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	5 cut(s)	6, 151, 493, 511, 750
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	1 cut(s)	656
BstSCI	CCNGG	1 cut(s)	654
BstV1I	GCAGC	1 cut(s)	598
BstX2I	RGATCY	2 cut(s)	6, 750
BstYI	RGATCY	2 cut(s)	6, 750
Bsu15I	ATCGAT	1 cut(s)	438
BsuRI	GGCC	2 cut(s)	404, 654
BsuTUI	ATCGAT	1 cut(s)	438
BtsCI	GGATG	5 cut(s)	148, 164, 262, 741, 754
BtsIMutI	CAGTG	2 cut(s)	310, 542
CciI	TCATGA	1 cut(s)	571
CfoI	GCGC	1 cut(s)	525
Cfr13I	GGNCC	2 cut(s)	43, 604
ClaI	ATCGAT	1 cut(s)	438
Csp6I	GTAC	1 cut(s)	807
CviAII	CATG	3 cut(s)	284, 559, 572
CviJI	RGCY	9 cut(s)	148, 269, 404, 548, 563, 589, 654, 673, 781
CviKI_1	RGCY	9 cut(s)	148, 269, 404, 548, 563, 589, 654, 673, 781
CviQI	GTAC	1 cut(s)	807
DdeI	CTNAG	3 cut(s)	122, 399, 504
DpnI	GATC	5 cut(s)	8, 153, 495, 513, 752
DpnII	GATC	5 cut(s)	6, 151, 493, 511, 750
DraIII	CACNNNGTG	1 cut(s)	287
DrdI	GACNNNNNNGTC	1 cut(s)	770
DseDI	GACNNNNNNGTC	1 cut(s)	770
Eam1104I	CTCTTC	1 cut(s)	737
EarI	CTCTTC	1 cut(s)	737
Eco47I	GGWCC	2 cut(s)	43, 604
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	654
FaeI	CATG	3 cut(s)	287, 562, 575
FaiI	YATR	5 cut(s)	24, 285, 333, 560, 573
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FatI	CATG	3 cut(s)	283, 558, 571
FbaI	TGATCA	3 cut(s)	151, 493, 511
Fnu4HI	GCNGC	1 cut(s)	587
FokI	GGATG	5 cut(s)	155, 171, 269, 741, 748
Fsp4HI	GCNGC	1 cut(s)	587
FspBI	CTAG	1 cut(s)	786
GlaI	GCGC	1 cut(s)	524
GluI	GCNGC	1 cut(s)	587
HaeIII	GGCC	2 cut(s)	404, 654
HapII	CCGG	1 cut(s)	86
HhaI	GCGC	1 cut(s)	525
Hin1II	CATG	3 cut(s)	287, 562, 575
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HinfI	GANTC	5 cut(s)	389, 500, 593, 695, 833
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	2 cut(s)	302, 542
Hpy166II	GTNNAC	2 cut(s)	357, 488
Hpy188I	TCNGA	4 cut(s)	123, 400, 505, 832
Hpy188III	TCNNGA	4 cut(s)	497, 572, 709, 775
Hpy8I	GTNNAC	2 cut(s)	357, 488
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	3 cut(s)	238, 305, 374
HpyCH4V	TGCA	4 cut(s)	62, 718, 791, 874
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	3 cut(s)	122, 399, 504
Hsp92II	CATG	3 cut(s)	287, 562, 575
HspAI	GCGC	1 cut(s)	523
Ksp22I	TGATCA	3 cut(s)	151, 493, 511
Kzo9I	GATC	5 cut(s)	6, 151, 493, 511, 750
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	1 cut(s)	598
LweI	GCATC	1 cut(s)	814
MaeI	CTAG	1 cut(s)	786
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	5 cut(s)	8, 153, 495, 513, 752
MboI	GATC	5 cut(s)	6, 151, 493, 511, 750
MboII	GAAGA	7 cut(s)	16, 323, 347, 631, 634, 754, 760
MflI	RGATCY	2 cut(s)	6, 750
MluCI	AATT	1 cut(s)	852
MlyI	GAGTC	2 cut(s)	398, 587
MmeI	TCCRAC	1 cut(s)	631
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	48, 176
MslI	CAYNNNNRTG	2 cut(s)	288, 869
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	656
MvaI	CCWGG	1 cut(s)	656
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeII	GATC	5 cut(s)	6, 151, 493, 511, 750
NlaIII	CATG	3 cut(s)	287, 562, 575
NlaIV	GGNNCC	2 cut(s)	187, 862
NmuCI	GTSAC	1 cut(s)	299
OliI	CACNNNNGTG	1 cut(s)	869
PagI	TCATGA	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	500, 695, 833
PkrI	GCNGC	1 cut(s)	588
PleI	GAGTC	2 cut(s)	397, 587
PpsI	GAGTC	2 cut(s)	397, 587
PpuMI	RGGWCCY	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	654
PspGI	CCWGG	1 cut(s)	654
PspN4I	GGNNCC	2 cut(s)	187, 862
PspPI	GGNCC	2 cut(s)	43, 604
PspPPI	RGGWCCY	1 cut(s)	43
PsuI	RGATCY	2 cut(s)	6, 750
RsaI	GTAC	1 cut(s)	808
RsaNI	GTAC	1 cut(s)	807
RseI	CAYNNNNRTG	2 cut(s)	288, 869
SaqAI	TTAA	2 cut(s)	48, 176
SatI	GCNGC	1 cut(s)	587
Sau3AI	GATC	5 cut(s)	6, 151, 493, 511, 750
Sau96I	GGNCC	2 cut(s)	43, 604
SchI	GAGTC	2 cut(s)	398, 587
ScrFI	CCNGG	1 cut(s)	656
SfaNI	GCATC	1 cut(s)	814
SinI	GGWCC	2 cut(s)	43, 604
SmiMI	CAYNNNNRTG	2 cut(s)	288, 869
SpeI	ACTAGT	1 cut(s)	785
Sse9I	AATT	1 cut(s)	852
SspMI	CTAG	1 cut(s)	786
StyD4I	CCNGG	1 cut(s)	654
TaaI	ACNGT	3 cut(s)	238, 305, 374
TaqI	TCGA	6 cut(s)	198, 438, 637, 795, 816, 856
TasI	AATT	1 cut(s)	852
TfiI	GAWTC	3 cut(s)	500, 695, 833
Tru1I	TTAA	2 cut(s)	48, 176
Tru9I	TTAA	2 cut(s)	48, 176
TscAI	CASTG	2 cut(s)	310, 549
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	1 cut(s)	586
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	8 cut(s)	11, 17, 23, 324, 348, 489, 547, 644
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	2 cut(s)	310, 549
VpaK11BI	GGWCC	2 cut(s)	43, 604
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.