Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008623

Physical Location & Seq

Genomic Coordinates Forward (+)

11771627 .. 11772878

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAAGATCTTCAACTGGGTTCATAAGCGGCTTCATCAGAAGGTTGAGTTTGCTGGAAATGTGAAAAAAACTGAACTGGAAGTGGAAACCAATCACAAGGGTACACAAGCATTTCTCAAGCAAGTCGGACTAGTTAATGTTGATGGGCTTGACGGTTGGAGGGAGGGCATTTTAACGATAGGTACCTTGGGTTTCGATCCCGTAAAACCCTTCAACTCCCAGAACGAATATTTCGTTTTGGAGAGAGAAGAGCAAGAGCACGATCAGGAAAACAATGGATTTTCACACTGTGGTGATGACGACGACGAAGATTATGAACATTATGATGATAATTTTGGAGATGAAGAACTGAATCCTTTAATATTTAAAACATTTGGACACAGTTTTGAGGACGTTGGGTCAAACTCTGATGCCACTGAGAAACTAGTTGATGATGATCATGCGATCTTGACCGTTGATGGTGTTCCTCTTACACCATATGAAGGGTCCAACAATGAAATCAGTATTGCACCACCTGATCTGTACCGTTGCGAGATCACTGATGATGATCAAAGGAAGAAGAGAGGCCAAAGAATAACCCTAGCTGACCTATTCCAGGCTCGATCATGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

23.27

Weight (kDa)

4.51

Isoelectric Point (pI)

29.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46640 AT2G46640 AT2G46640 AT2G46640
fragaria_vesca	FvH4_7g17280
malus_domestica	MD00G1035800.v1.1 MD07G1155200.v1.1
prunus_persica	Prupe.2G194000_v2.0.a1
pyrus_communis	pycom01g10970 pycom01g10980 pycom07g15250
rosa_chinensis	RchiOBHm_Chr1g0360641
rosa_laevigata	RLG00000027791
rosa_multiflora	Rmu_sc0001910.1_g000004
rosa_roxburghii	Rroxscaffold_4G00295930
rosa_rugosa	Rorug01G0280600 Rorug01G0280700 Rorug01G0280800.1
rosa_samantha	Rh1AG292700 Rh1BG257400 Rh1CG275200 Rh1DG287300
rosa_wichuraiana	Rw1G025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	182
AccB1I	GGYRCC	1 cut(s)	182
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	1 cut(s)	191
AdeI	CACNNNGTG	1 cut(s)	290
AfaI	GTAC	3 cut(s)	103, 184, 524
AfiI	CCNNNNNNNGG	2 cut(s)	482, 595
AgsI	TTSAA	2 cut(s)	13, 214
AhdI	GACNNNNNGTC	1 cut(s)	397
AhlI	ACTAGT	2 cut(s)	130, 424
AjnI	CCWGG	1 cut(s)	594
AleI	CACNNNNGTG	1 cut(s)	291
AluBI	AGCT	1 cut(s)	584
AluI	AGCT	1 cut(s)	584
Alw21I	GWGCWC	1 cut(s)	261
AlwI	GGATC	1 cut(s)	191
AoxI	GGCC	1 cut(s)	565
Asp700I	GAANNNNTTC	1 cut(s)	8
Asp718I	GGTACC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	486
AsuHPI	GGTGA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	486
BanI	GGYRCC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	261
BccI	CCATC	2 cut(s)	137, 452
BciT130I	CCWGG	1 cut(s)	596
BclI	TGATCA	2 cut(s)	436, 547
BcuI	ACTAGT	2 cut(s)	130, 424
BfaI	CTAG	3 cut(s)	131, 425, 581
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	596
Bme18I	GGWCC	1 cut(s)	486
BmeRI	GACNNNNNGTC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	486
BmiI	GGNNCC	2 cut(s)	184, 487
BmrFI	CCNGG	1 cut(s)	596
BmrI	ACTGGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	400
BmuI	ACTGGG	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	101
BsaBI	GATNNNNATC	2 cut(s)	435, 546
BsaJI	CCNNGG	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	2 cut(s)	482, 595
Bse1I	ACTGG	2 cut(s)	20, 81
Bse8I	GATNNNNATC	2 cut(s)	435, 546
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	1 cut(s)	186
BseJI	GATNNNNATC	2 cut(s)	435, 546
BseLI	CCNNNNNNNGG	2 cut(s)	482, 595
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	2 cut(s)	20, 81
BshFI	GGCC	1 cut(s)	567
BshNI	GGYRCC	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	261
BslI	CCNNNNNNNGG	2 cut(s)	482, 595
BsnI	GGCC	1 cut(s)	567
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	9 cut(s)	6, 196, 262, 436, 444, 517, 534, 547, 602
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	1 cut(s)	567
BspCNI	CTCAG	1 cut(s)	409
BspHI	TCATGA	1 cut(s)	611
BspLI	GGNNCC	2 cut(s)	184, 487
BspPI	GGATC	1 cut(s)	191
BspQI	GCTCTTC	1 cut(s)	243
BspT107I	GGYRCC	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	20, 81
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	9 cut(s)	6, 196, 262, 436, 444, 517, 534, 547, 602
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	5 cut(s)	155, 290, 383, 454, 527
Bst6I	CTCTTC	2 cut(s)	243, 554
BstDEI	CTNAG	1 cut(s)	417
BstENI	CCTNNNNNAGG	1 cut(s)	593
BstKTI	GATC	9 cut(s)	9, 199, 265, 439, 447, 520, 537, 550, 605
BstMBI	GATC	9 cut(s)	6, 196, 262, 436, 444, 517, 534, 547, 602
BstNI	CCWGG	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	594
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	567
BtsIMutI	CAGTG	3 cut(s)	286, 414, 537
CciI	TCATGA	1 cut(s)	611
Cfr13I	GGNCC	1 cut(s)	486
Csp6I	GTAC	3 cut(s)	102, 183, 523
CviAII	CATG	3 cut(s)	440, 606, 612
CviJI	RGCY	5 cut(s)	31, 148, 567, 584, 599
CviKI_1	RGCY	5 cut(s)	31, 148, 567, 584, 599
CviQI	GTAC	3 cut(s)	102, 183, 523
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	9 cut(s)	8, 198, 264, 438, 446, 519, 536, 549, 604
DpnII	GATC	9 cut(s)	6, 196, 262, 436, 444, 517, 534, 547, 602
DraI	TTTAAA	1 cut(s)	367
DraIII	CACNNNGTG	1 cut(s)	290
DriI	GACNNNNNGTC	1 cut(s)	397
Eam1104I	CTCTTC	2 cut(s)	243, 554
Eam1105I	GACNNNNNGTC	1 cut(s)	397
EarI	CTCTTC	2 cut(s)	243, 554
Eco130I	CCWWGG	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	486
EcoNI	CCTNNNNNAGG	1 cut(s)	593
EcoRII	CCWGG	1 cut(s)	594
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	3 cut(s)	443, 609, 615
FaiI	YATR	8 cut(s)	24, 315, 324, 441, 478, 480, 607, 613
FatI	CATG	3 cut(s)	439, 605, 611
FauNDI	CATATG	1 cut(s)	478
FbaI	TGATCA	2 cut(s)	436, 547
Fnu4HI	GCNGC	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	3 cut(s)	131, 425, 581
GluI	GCNGC	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	567
Hin1II	CATG	3 cut(s)	443, 609, 615
HinfI	GANTC	1 cut(s)	352
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	3 cut(s)	39, 128, 409
Hpy188III	TCNNGA	3 cut(s)	266, 448, 612
Hpy8I	GTNNAC	1 cut(s)	104
Hpy99I	CGWCG	2 cut(s)	305, 308
HpyAV	CCTTC	3 cut(s)	34, 220, 476
HpyCH4III	ACNGT	5 cut(s)	155, 290, 383, 454, 527
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	1 cut(s)	509
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	3 cut(s)	443, 609, 615
KpnI	GGTACC	1 cut(s)	186
Ksp22I	TGATCA	2 cut(s)	436, 547
Kzo9I	GATC	9 cut(s)	6, 196, 262, 436, 444, 517, 534, 547, 602
LguI	GCTCTTC	1 cut(s)	243
LpnPI	CCDG	7 cut(s)	39, 62, 233, 251, 528, 581, 608
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	3 cut(s)	131, 425, 581
MaeII	ACGT	1 cut(s)	393
MalI	GATC	9 cut(s)	8, 198, 264, 438, 446, 519, 536, 549, 604
MboI	GATC	9 cut(s)	6, 196, 262, 436, 444, 517, 534, 547, 602
MboII	GAAGA	6 cut(s)	16, 260, 320, 356, 568, 571
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	1 cut(s)	331
MmeI	TCCRAC	3 cut(s)	106, 137, 513
MnlI	CCTC	5 cut(s)	153, 157, 382, 477, 557
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	4 cut(s)	135, 173, 359, 366
MslI	CAYNNNNRTG	3 cut(s)	291, 324, 610
MspR9I	CCNGG	1 cut(s)	596
MvaI	CCWGG	1 cut(s)	596
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	9 cut(s)	6, 196, 262, 436, 444, 517, 534, 547, 602
NlaIII	CATG	3 cut(s)	443, 609, 615
NlaIV	GGNNCC	2 cut(s)	184, 487
OliI	CACNNNNGTG	1 cut(s)	291
PagI	TCATGA	1 cut(s)	611
PciSI	GCTCTTC	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	594
PspN4I	GGNNCC	2 cut(s)	184, 487
PspPI	GGNCC	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	3 cut(s)	103, 184, 524
RsaNI	GTAC	3 cut(s)	102, 183, 523
RseI	CAYNNNNRTG	3 cut(s)	291, 324, 610
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	4 cut(s)	135, 173, 359, 366
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	9 cut(s)	6, 196, 262, 436, 444, 517, 534, 547, 602
Sau96I	GGNCC	1 cut(s)	486
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	7 cut(s)	45, 184, 188, 396, 517, 586, 591
SfaNI	GCATC	1 cut(s)	400
SinI	GGWCC	1 cut(s)	486
SmiMI	CAYNNNNRTG	3 cut(s)	291, 324, 610
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SpeI	ACTAGT	2 cut(s)	130, 424
Sse9I	AATT	1 cut(s)	331
SsiI	CCGC	1 cut(s)	28
SspI	AATATT	2 cut(s)	230, 363
SspMI	CTAG	3 cut(s)	131, 425, 581
StyD4I	CCNGG	1 cut(s)	594
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	5 cut(s)	155, 290, 383, 454, 527
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	2 cut(s)	195, 601
TasI	AATT	1 cut(s)	331
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	4 cut(s)	135, 173, 359, 366
Tru9I	TTAA	4 cut(s)	135, 173, 359, 366
TscAI	CASTG	3 cut(s)	293, 421, 544
TspDTI	ATGAA	8 cut(s)	11, 17, 23, 330, 357, 495, 510, 600
TspRI	CASTG	3 cut(s)	293, 421, 544
VpaK11BI	GGWCC	1 cut(s)	486
XagI	CCTNNNNNAGG	1 cut(s)	593
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	3 cut(s)	131, 425, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.