pycom01g10980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0008623
Physical Location & Seq
Forward (+)
11772922 .. 11774344
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g10980.1

Sequence Viewer

Length: 282 bp
ATGCAGAAAAAGGTGAACGCGAGAACAAAGACCGGCCTATCATTTGCCAAGAAGCTCATTCTTCGCGTCAAAGAGGATTCAAGTCCAATAAAAAATCTGCAACGACTGATGAGGAGGATGTTGAAGAGGAAGATCCATCCAGCTGAGCATGATGTCAAGGTTGACAAATCAGATGGCCAGAAGCAGCCCGGTGCAGTAGAACTCGTCACCAAGGTTGAAAGTGATGCCTCTGAATCAGTTTCTTTGCTTCCAATTCAAGGTTCTACTGCTTGTGTCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.36

Weight (kDa)

10.07

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 20, 66
AclWI GGATC 1 cut(s) 127
AcoI YGGCCR 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 4 cut(s) 81, 124, 218, 257
AjuI GAANNNNNNNTTGG 2 cut(s) 244, 276
AluBI AGCT 2 cut(s) 55, 143
AluI AGCT 2 cut(s) 55, 143
AlwI GGATC 1 cut(s) 127
AoxI GGCC 2 cut(s) 34, 175
ApeKI GCWGC 1 cut(s) 184
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 2 cut(s) 25, 199
BalI TGGCCA 1 cut(s) 177
BbvI GCAGC 1 cut(s) 196
BccI CCATC 2 cut(s) 144, 167
BcnI CCSGG 1 cut(s) 189
BisI GCNGC 1 cut(s) 185
BlpI GCTNAGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 186
Bme1390I CCNGG 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 1 cut(s) 214
Bpu1102I GCTNAGC 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse118I RCCGGY 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 2 cut(s) 123, 136
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMII CTCAG 1 cut(s) 135
BseRI GAGGAG 1 cut(s) 127
BseXI GCAGC 1 cut(s) 196
BsgI GTGCAG 1 cut(s) 213
Bsh1236I CGCG 2 cut(s) 20, 66
BshFI GGCC 2 cut(s) 36, 177
BsiSI CCGG 2 cut(s) 33, 189
BslI CCNNNNNNNGG 1 cut(s) 257
BsnI GGCC 2 cut(s) 36, 177
Bsp143I GATC 1 cut(s) 132
Bsp1720I GCTNAGC 1 cut(s) 144
BspANI GGCC 2 cut(s) 36, 177
BspCNI CTCAG 1 cut(s) 136
BspFNI CGCG 2 cut(s) 20, 66
BspPI GGATC 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 123, 136
BstFNI CGCG 2 cut(s) 20, 66
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 187
BstUI CGCG 2 cut(s) 20, 66
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 132
BstYI RGATCY 1 cut(s) 132
BsuRI GGCC 2 cut(s) 36, 177
BtsCI GGATG 2 cut(s) 123, 136
Cfr10I RCCGGY 1 cut(s) 32
CseI GACGC 1 cut(s) 55
CviAII CATG 1 cut(s) 149
CviJI RGCY 5 cut(s) 36, 55, 143, 177, 187
CviKI_1 RGCY 5 cut(s) 36, 55, 143, 177, 187
DdeI CTNAG 1 cut(s) 144
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
EaeI YGGCCR 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 1 cut(s) 152
FaiI YATR 1 cut(s) 150
FatI CATG 1 cut(s) 148
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 2 cut(s) 123, 130
Fsp4HI GCNGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 185
HaeIII GGCC 2 cut(s) 36, 177
HapII CCGG 2 cut(s) 33, 189
HgaI GACGC 1 cut(s) 55
Hin1II CATG 1 cut(s) 152
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 2 cut(s) 77, 233
HpaII CCGG 2 cut(s) 33, 189
HphI GGTGA 2 cut(s) 25, 199
Hpy166II GTNNAC 2 cut(s) 16, 163
Hpy188I TCNGA 2 cut(s) 172, 232
Hpy8I GTNNAC 2 cut(s) 16, 163
HpyCH4V TGCA 3 cut(s) 4, 100, 194
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 1 cut(s) 152
Kzo9I GATC 1 cut(s) 132
LpnPI CCDG 4 cut(s) 46, 153, 191, 202
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 1 cut(s) 214
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 3 cut(s) 53, 136, 142
MflI RGATCY 1 cut(s) 132
MlsI TGGCCA 1 cut(s) 177
MluCI AATT 1 cut(s) 252
MluNI TGGCCA 1 cut(s) 177
MnlI CCTC 5 cut(s) 67, 105, 108, 120, 238
Mox20I TGGCCA 1 cut(s) 177
MscI TGGCCA 1 cut(s) 177
Msp20I TGGCCA 1 cut(s) 177
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 2 cut(s) 33, 189
MspR9I CCNGG 1 cut(s) 189
MvnI CGCG 2 cut(s) 20, 66
NciI CCSGG 1 cut(s) 189
NdeII GATC 1 cut(s) 132
NlaIII CATG 1 cut(s) 152
NmuCI GTSAC 1 cut(s) 205
PfeI GAWTC 2 cut(s) 77, 233
PkrI GCNGC 1 cut(s) 186
PsuI RGATCY 1 cut(s) 132
PvuII CAGCTG 1 cut(s) 143
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 1 cut(s) 132
ScrFI CCNGG 1 cut(s) 189
SetI ASST 6 cut(s) 15, 57, 145, 162, 216, 262
SfaNI GCATC 1 cut(s) 214
Sse9I AATT 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 187
StyI CCWWGG 1 cut(s) 210
TasI AATT 1 cut(s) 252
TfiI GAWTC 2 cut(s) 77, 233
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.