Rorug01G0280700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0008623
Physical Location & Seq
Forward (+)
39404158 .. 39407051
2894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0280700.1

Sequence Viewer

Length: 1251 bp
ATGCTGACGCAACCCACAAACTGCATCAAACCCACCTCCAACATCCTCTTCTCTTCCAACTCTATCCCCAAGACTTTCTCAAAATTACATCCACGCCTTCCCCTGCATCCCAGAACCTTCTCATTCAAACTCCACTGCTCACAGTATCCAAACCCAACTCCATCCTCATCTTCTTCTTCTCCATTCCAACCCCTAATCTCAATCCTCCAGGTCATACCGGACTGGGCCGACGAAATCAAAGAGCGTGGCTTCAGACAGAACAGAACACTCTATGACCATGAGAAATGGGTTCACCACAGAAGCTCCTACCGCCACCTCCGCCACTTCCTCACCAGCCTTTCCTCGAGGGTGATTTTGTCTTTAATTCCTCCGGTGATTGCTTTCACCTTGGTGGCAGTGGTCATTGCCAGCTACAATACAGCAGTCGCATTGGAGTGGCTTCCGGAATTTTTCCCCATCTTGAGGTCCTCAACTCTGCCGTACCAGCTTACAGCGCCGGCATTGGCGCTGTTGTTGGTGTTCAGGACAGAGGCTTCTTATTCGAGGTTTGATGAAGGGAGGAAGGCTTGGACTAAAGTGATTGCCGGGGCTAATGATTTTGCCAGGCAGATCATTTCCGGAGTTGAGAATCCTGGTGATGCAGAGCTAAAGAAGGCACTTTTGCAGTATGTTGTGGCCTTCCCGGTTGCACTTAAGTGTCATGTCATTTATGGCTCAAATATGGGACGTGACCTCCAAAATTTGCTTGAACTAGATGACCTGCTAGTTGTTTTAAGCTCAAAACATGGACCTGGCTGCATTATTGAGTTCATCTCCCAGAACATCCGAATGCTAAAGTTGGAGGAATCAAGGAGAAATATGTTGGAATCAAATATGTCTTGTTTCCATGAAGGAATTGGCGTATGTGAAAATCTCATTGGTACTCCCATTCCTCTCTCTTATACACGCTTGACTTCAAGGTTTCTAGTCCTCTGGCATCTCACTCTCCCTATCATACTTTGGGATGACTGCCACTGGATTGTGGTACCTGCTACCTTTATTAGCGCTGCTTCATTGTTCTGCATTGAGGAAGTCGGTGTTCTCATTGAAGAGCCATTTCCAATGCTCGCCCTTGATGACCTTTGCAAATCTGTTCAAGAGAACGTACAGGAGGCTCTTGCAAGAGAAAAACTAATTCAAGCGCGGCTTACTGCAAAAGGAAGGACCCAAACCAAGAAGCAGCACTCGCCAAATGGTCAGCCGAAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

416

Amino Acids

46.95

Weight (kDa)

8.79

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bestrophin_2 PF25539 95 - 384 5.6e-85 Bacterial/Fungal Bestrophin protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 343
Acc36I ACCTGC 2 cut(s) 768, 1036
Acc65I GGTACC 1 cut(s) 1024
AccB1I GGYRCC 1 cut(s) 1024
AccII CGCG 1 cut(s) 1183
AccIII TCCGGA 2 cut(s) 442, 617
AciI CCGC 3 cut(s) 310, 319, 1183
AcsI RAATTY 2 cut(s) 446, 739
AcuI CTGAAG 1 cut(s) 235
AfaI GTAC 4 cut(s) 482, 922, 1026, 1146
AfeI AGCGCT 1 cut(s) 1045
AfiI CCNNNNNNNGG 1 cut(s) 462
AflII CTTAAG 1 cut(s) 692
AgsI TTSAA 6 cut(s) 127, 749, 957, 1088, 1136, 1178
AjiI CACGTC 1 cut(s) 728
AjnI CCWGG 4 cut(s) 207, 602, 631, 790
AjuI GAANNNNNNNTTGG 4 cut(s) 32, 64, 900, 932
AleI CACNNNNGTG 2 cut(s) 389, 694
AluBI AGCT 5 cut(s) 303, 411, 487, 646, 777
AluI AGCT 5 cut(s) 303, 411, 487, 646, 777
Ama87I CYCGRG 1 cut(s) 343
Aor13HI TCCGGA 2 cut(s) 442, 617
Aor51HI AGCGCT 1 cut(s) 1045
AoxI GGCC 2 cut(s) 225, 675
ApeKI GCWGC 3 cut(s) 795, 1046, 1219
ApoI RAATTY 2 cut(s) 446, 739
Asp718I GGTACC 1 cut(s) 1024
AspLEI GCGC 4 cut(s) 496, 508, 1046, 1183
AspS9I GGNCC 4 cut(s) 225, 465, 788, 1203
AsuC2I CCSGG 2 cut(s) 586, 683
AsuHPI GGTGA 6 cut(s) 284, 322, 361, 376, 385, 647
AvaI CYCGRG 1 cut(s) 343
AvaII GGWCC 3 cut(s) 465, 788, 1203
BanI GGYRCC 1 cut(s) 1024
BbvI GCAGC 3 cut(s) 782, 1033, 1231
BccI CCATC 2 cut(s) 169, 464
BceAI ACGGC 1 cut(s) 463
BciT130I CCWGG 4 cut(s) 209, 604, 633, 792
BciVI GTATCC 1 cut(s) 156
BcnI CCSGG 2 cut(s) 586, 683
BfaI CTAG 4 cut(s) 752, 764, 965, 1249
BfoI RGCGCY 3 cut(s) 497, 509, 1047
BfrI CTTAAG 1 cut(s) 692
BfuAI ACCTGC 2 cut(s) 768, 1036
BfuI GTATCC 1 cut(s) 156
BisI GCNGC 4 cut(s) 796, 1047, 1184, 1220
BlsI GCNGC 4 cut(s) 797, 1048, 1185, 1221
Bme1390I CCNGG 6 cut(s) 209, 586, 604, 633, 683, 792
Bme18I GGWCC 3 cut(s) 465, 788, 1203
BmeT110I CYCGRG 1 cut(s) 343
BmgBI CACGTC 1 cut(s) 728
BmgT120I GGNCC 4 cut(s) 225, 465, 788, 1203
BmiI GGNNCC 2 cut(s) 1026, 1205
BmrFI CCNGG 6 cut(s) 209, 586, 604, 633, 683, 792
BmrI ACTGGG 1 cut(s) 232
BmsI GCATC 4 cut(s) 33, 115, 628, 985
BmuI ACTGGG 1 cut(s) 232
BplI GAGNNNNNCTC 2 cut(s) 797, 829
BpmI CTGGAG 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 481
BpuMI CCSGG 2 cut(s) 586, 683
BsaJI CCNNGG 2 cut(s) 387, 585
BsaWI WCCGGW 4 cut(s) 217, 370, 442, 617
BsaXI ACNNNNNCTCC 4 cut(s) 287, 317, 717, 747
Bsc4I CCNNNNNNNGG 1 cut(s) 462
Bse118I RCCGGY 1 cut(s) 496
Bse1I ACTGG 2 cut(s) 227, 1019
Bse3DI GCAATG 1 cut(s) 402
BseAI TCCGGA 2 cut(s) 442, 617
BseBI CCWGG 4 cut(s) 209, 604, 633, 792
BseDI CCNNGG 2 cut(s) 387, 585
BseGI GGATG 6 cut(s) 42, 88, 106, 161, 822, 1009
BseLI CCNNNNNNNGG 1 cut(s) 462
BseMI GCAATG 1 cut(s) 402
BseNI ACTGG 2 cut(s) 227, 1019
BseXI GCAGC 3 cut(s) 782, 1033, 1231
Bsh1236I CGCG 1 cut(s) 1183
BshFI GGCC 2 cut(s) 227, 677
BshNI GGYRCC 1 cut(s) 1024
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 7 cut(s) 218, 371, 443, 497, 585, 618, 683
BslFI GGGAC 1 cut(s) 738
BslI CCNNNNNNNGG 1 cut(s) 462
BsmFI GGGAC 1 cut(s) 738
BsmI GAATGC 1 cut(s) 834
BsnI GGCC 2 cut(s) 227, 677
BsoBI CYCGRG 1 cut(s) 343
Bsp13I TCCGGA 2 cut(s) 442, 617
Bsp143I GATC 1 cut(s) 609
BspACI CCGC 3 cut(s) 310, 319, 1183
BspANI GGCC 2 cut(s) 227, 677
BspEI TCCGGA 2 cut(s) 442, 617
BspFNI CGCG 1 cut(s) 1183
BspLI GGNNCC 2 cut(s) 1026, 1205
BspMI ACCTGC 2 cut(s) 768, 1036
BspQI GCTCTTC 1 cut(s) 1083
BspT107I GGYRCC 1 cut(s) 1024
BspTI CTTAAG 1 cut(s) 692
BsrDI GCAATG 1 cut(s) 402
BsrFI RCCGGY 1 cut(s) 496
BsrI ACTGG 2 cut(s) 227, 1019
BssAI RCCGGY 1 cut(s) 496
BssECI CCNNGG 2 cut(s) 387, 585
BssMI GATC 1 cut(s) 609
BssT1I CCWWGG 1 cut(s) 387
Bst2UI CCWGG 4 cut(s) 209, 604, 633, 792
Bst4CI ACNGT 1 cut(s) 144
Bst6I CTCTTC 3 cut(s) 53, 58, 1083
BstAFI CTTAAG 1 cut(s) 692
BstC8I GCNNGC 3 cut(s) 409, 498, 1107
BstF5I GGATG 6 cut(s) 42, 88, 106, 161, 822, 1009
BstFNI CGCG 1 cut(s) 1183
BstH2I RGCGCY 3 cut(s) 497, 509, 1047
BstHHI GCGC 4 cut(s) 496, 508, 1046, 1183
BstKTI GATC 1 cut(s) 612
BstMBI GATC 1 cut(s) 609
BstMWI GCNNNNNNNGC 5 cut(s) 309, 318, 484, 493, 1225
BstNI CCWGG 4 cut(s) 209, 604, 633, 792
BstSCI CCNGG 6 cut(s) 207, 584, 602, 631, 681, 790
BstUI CGCG 1 cut(s) 1183
BstV1I GCAGC 3 cut(s) 782, 1033, 1231
BsuI GTATCC 1 cut(s) 156
BsuRI GGCC 2 cut(s) 227, 677
BtrI CACGTC 1 cut(s) 728
BtsCI GGATG 6 cut(s) 42, 88, 106, 161, 822, 1009
BtsI GCAGTG 2 cut(s) 133, 402
BtsIMutI CAGTG 3 cut(s) 133, 402, 1012
BveI ACCTGC 2 cut(s) 768, 1036
Cac8I GCNNGC 3 cut(s) 409, 498, 1107
CfoI GCGC 4 cut(s) 496, 508, 1046, 1183
Cfr10I RCCGGY 1 cut(s) 496
Cfr13I GGNCC 4 cut(s) 225, 465, 788, 1203
CseI GACGC 1 cut(s) 16
Csp6I GTAC 4 cut(s) 481, 921, 1025, 1145
CspCI CAANNNNNGTGG 2 cut(s) 226, 261
CviAII CATG 4 cut(s) 278, 701, 785, 887
CviQI GTAC 4 cut(s) 481, 921, 1025, 1145
DpnI GATC 1 cut(s) 611
DpnII GATC 1 cut(s) 609
Eam1104I CTCTTC 3 cut(s) 53, 58, 1083
EarI CTCTTC 3 cut(s) 53, 58, 1083
EciI GGCGGA 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 387
Eco47I GGWCC 3 cut(s) 465, 788, 1203
Eco47III AGCGCT 1 cut(s) 1045
Eco57I CTGAAG 1 cut(s) 235
Eco88I CYCGRG 1 cut(s) 343
EcoO109I RGGNCCY 2 cut(s) 465, 1203
EcoRII CCWGG 4 cut(s) 207, 602, 631, 790
EcoT14I CCWWGG 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 4 cut(s) 281, 704, 788, 890
FalI AAGNNNNNCTT 2 cut(s) 1170, 1202
FaqI GGGAC 1 cut(s) 738
FatI CATG 4 cut(s) 277, 700, 784, 886
Fnu4HI GCNGC 4 cut(s) 796, 1047, 1184, 1220
FokI GGATG 6 cut(s) 29, 75, 93, 148, 809, 1016
Fsp4HI GCNGC 4 cut(s) 796, 1047, 1184, 1220
FspBI CTAG 4 cut(s) 752, 764, 965, 1249
GlaI GCGC 4 cut(s) 495, 507, 1045, 1182
GluI GCNGC 4 cut(s) 796, 1047, 1184, 1220
GsuI CTGGAG 1 cut(s) 191
HaeII RGCGCY 3 cut(s) 497, 509, 1047
HaeIII GGCC 2 cut(s) 227, 677
HapII CCGG 7 cut(s) 218, 371, 443, 497, 585, 618, 683
HgaI GACGC 1 cut(s) 16
HhaI GCGC 4 cut(s) 496, 508, 1046, 1183
Hin1II CATG 4 cut(s) 281, 704, 788, 890
Hin6I GCGC 4 cut(s) 494, 506, 1044, 1181
HinP1I GCGC 4 cut(s) 494, 506, 1044, 1181
HinfI GANTC 3 cut(s) 628, 845, 866
HpaII CCGG 7 cut(s) 218, 371, 443, 497, 585, 618, 683
HphI GGTGA 6 cut(s) 284, 322, 361, 376, 385, 647
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 2 cut(s) 254, 827
Hpy188III TCNNGA 5 cut(s) 443, 460, 523, 618, 1136
Hpy8I GTNNAC 1 cut(s) 292
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 8 cut(s) 107, 127, 548, 556, 646, 688, 884, 1194
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4IV ACGT 2 cut(s) 727, 1143
HpyF10VI GCNNNNNNNGC 5 cut(s) 309, 318, 484, 493, 1225
HpySE526I ACGT 2 cut(s) 727, 1143
Hsp92II CATG 4 cut(s) 281, 704, 788, 890
HspAI GCGC 4 cut(s) 494, 506, 1044, 1181
Kpn2I TCCGGA 2 cut(s) 442, 617
KpnI GGTACC 1 cut(s) 1028
KroI GCCGGC 1 cut(s) 496
KroNI GCCGGC 1 cut(s) 498
Kzo9I GATC 1 cut(s) 609
LguI GCTCTTC 1 cut(s) 1083
LmnI GCTCC 1 cut(s) 308
Lsp1109I GCAGC 3 cut(s) 782, 1033, 1231
LweI GCATC 4 cut(s) 33, 115, 628, 985
MaeI CTAG 4 cut(s) 752, 764, 965, 1249
MaeII ACGT 2 cut(s) 727, 1143
MaeIII GTNAC 1 cut(s) 728
MalI GATC 1 cut(s) 611
MboI GATC 1 cut(s) 609
MboII GAAGA 6 cut(s) 40, 45, 162, 165, 168, 1100
MluCI AATT 6 cut(s) 83, 363, 446, 739, 894, 1173
MmeI TCCRAC 5 cut(s) 63, 81, 211, 819, 843
MroI TCCGGA 2 cut(s) 442, 617
MroNI GCCGGC 1 cut(s) 496
MseI TTAA 3 cut(s) 362, 693, 773
MslI CAYNNNNRTG 4 cut(s) 389, 433, 694, 827
MspCI CTTAAG 1 cut(s) 692
MspI CCGG 7 cut(s) 218, 371, 443, 497, 585, 618, 683
MspR9I CCNGG 6 cut(s) 209, 586, 604, 633, 683, 792
Mva1269I GAATGC 1 cut(s) 834
MvaI CCWGG 4 cut(s) 209, 604, 633, 792
MvnI CGCG 1 cut(s) 1183
MwoI GCNNNNNNNGC 5 cut(s) 309, 318, 484, 493, 1225
NaeI GCCGGC 1 cut(s) 498
NciI CCSGG 2 cut(s) 586, 683
NdeII GATC 1 cut(s) 609
NgoMIV GCCGGC 1 cut(s) 496
NlaIII CATG 4 cut(s) 281, 704, 788, 890
NlaIV GGNNCC 2 cut(s) 1026, 1205
NmuCI GTSAC 1 cut(s) 728
OliI CACNNNNGTG 2 cut(s) 389, 694
PaeR7I CTCGAG 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 1083
PctI GAATGC 1 cut(s) 834
PdiI GCCGGC 1 cut(s) 498
PfeI GAWTC 3 cut(s) 628, 845, 866
PkrI GCNGC 4 cut(s) 797, 1048, 1185, 1221
PpuMI RGGWCCY 2 cut(s) 465, 1203
Psp5II RGGWCCY 2 cut(s) 465, 1203
Psp6I CCWGG 4 cut(s) 207, 602, 631, 790
PspGI CCWGG 4 cut(s) 207, 602, 631, 790
PspN4I GGNNCC 2 cut(s) 1026, 1205
PspPI GGNCC 4 cut(s) 225, 465, 788, 1203
PspPPI RGGWCCY 2 cut(s) 465, 1203
PspXI VCTCGAGB 1 cut(s) 343
RsaI GTAC 4 cut(s) 482, 922, 1026, 1146
RsaNI GTAC 4 cut(s) 481, 921, 1025, 1145
RseI CAYNNNNRTG 4 cut(s) 389, 433, 694, 827
SapI GCTCTTC 1 cut(s) 1083
SaqAI TTAA 3 cut(s) 362, 693, 773
SatI GCNGC 4 cut(s) 796, 1047, 1184, 1220
Sau3AI GATC 1 cut(s) 609
Sau96I GGNCC 4 cut(s) 225, 465, 788, 1203
ScrFI CCNGG 6 cut(s) 209, 586, 604, 633, 683, 792
SfaNI GCATC 4 cut(s) 33, 115, 628, 985
Sfr274I CTCGAG 1 cut(s) 343
SinI GGWCC 3 cut(s) 465, 788, 1203
SlaI CTCGAG 1 cut(s) 343
SmiMI CAYNNNNRTG 4 cut(s) 389, 433, 694, 827
SmlI CTYRAG 3 cut(s) 343, 460, 692
SmoI CTYRAG 3 cut(s) 343, 460, 692
Sse9I AATT 6 cut(s) 83, 363, 446, 739, 894, 1173
SsiI CCGC 3 cut(s) 310, 319, 1183
SspMI CTAG 4 cut(s) 752, 764, 965, 1249
StyD4I CCNGG 6 cut(s) 207, 584, 602, 631, 681, 790
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 1 cut(s) 144
TaiI ACGT 2 cut(s) 730, 1146
TaqI TCGA 2 cut(s) 344, 542
TasI AATT 6 cut(s) 83, 363, 446, 739, 894, 1173
TauI GCSGC 1 cut(s) 1186
TfiI GAWTC 3 cut(s) 628, 845, 866
Tru1I TTAA 3 cut(s) 362, 693, 773
Tru9I TTAA 3 cut(s) 362, 693, 773
TscAI CASTG 3 cut(s) 140, 402, 1019
TseFI GTSAC 1 cut(s) 728
TseI GCWGC 3 cut(s) 795, 1046, 1219
Tsp45I GTSAC 1 cut(s) 728
TspDTI ATGAA 4 cut(s) 567, 799, 903, 1041
TspRI CASTG 3 cut(s) 140, 402, 1019
Vha464I CTTAAG 1 cut(s) 692
VpaK11BI GGWCC 3 cut(s) 465, 788, 1203
XapI RAATTY 2 cut(s) 446, 739
XcmI CCANNNNNNNNNTGG 1 cut(s) 893
XhoI CTCGAG 1 cut(s) 343
XspI CTAG 4 cut(s) 752, 764, 965, 1249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.