FvH4_7g17280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0008623
Physical Location & Seq
Forward (+)
14710753 .. 14713329
2577 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17280.t1

Sequence Viewer

Length: 1047 bp
ATGCCATTTACCCACAAACATAGCTACATTCTAGAGACCCCAGTCCTAGGCACGTGTCACTTTCTCATTCTCCAACCCACTTGGCCCCCTCCTTTTAAGCTTTCTTCTGCTTCATTCTTAGTCCATACTTCAATTTGTACTCATCATTCTCTTGCCCACCAATTCTGTTGTGAAGTCTGGCCAGAAGTTATGAAGATCTTCAACTGGGTTCATAAGAGGTTTCATCACAAGGTCCCTAAAGATGGGGTTGCCGGAAATGGGGACAATACTGAACCGGAAGGTAATACCGATAAGGACACACAAGCATTTCTGAGTCAAGTATCCCTTGTAGATGGGATCGATCATGGATGGAGAGATGGCATTTTAACAATTGGCACCTTTGGTTTCGACCCCCTAAAATCCTTCAACAACCAAAGTGACTACACGGTTTTGGAGAGCGAGGAGGATGGTAAGGAAAGCCAAGAACTTACACATGGTGGTGATGATTGTGACAATGATGAAGATACTGATAATGTCTGTGAAGAACTGAACCCTTTGATGTTTACAACATTTGGACACAGTTTTGAGGATATGGGGTCGAACTCTGATGCCATTGTTGCGGAACCGGATGTGATTTCTCTCACTCCATTTGAGGGGTTTAATGAAATCATTGCTGAACCTGATCATGATTCTGAGACTGATCATATGAAGAGCAAAGGTGAGAGGATAACACTCGCTGATTTATTCATGGCCGATGGTCATGATTTTCAGTCGCAGCTTGACTCTCGCAAGGTCCAACCAGAGTTGAAGAAAATGAGCACTACTCGAACAAGGAATGGTGGCCTGGGATTTGCCAAGAAGCTCATTCCTCGTGTCAAAGAGGAGTCAACTCCAATCAAGAATGTGCAACGACTGATGAGGAGGATGTTGAAGAGGAAGATCCATCCAGCAGACCTTGATGTCAAGAAGCCTACTACTGCGGTCGAACTCATCAGTACCAATGTGGAAACTGATGCTTCTGAATCTGTTTCTTTGCTTCCAATTCAAGGTGCTACTTCTGTGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

349

Amino Acids

38.96

Weight (kDa)

5.17

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 938
AccB1I GGYRCC 1 cut(s) 374
AciI CCGC 2 cut(s) 599, 959
AclWI GGATC 2 cut(s) 344, 913
AcoI YGGCCR 2 cut(s) 179, 729
AcvI CACGTG 1 cut(s) 54
AdeI CACNNNGTG 1 cut(s) 476
AfaI GTAC 2 cut(s) 139, 976
AfiI CCNNNNNNNGG 5 cut(s) 47, 242, 258, 632, 1025
AflIII ACRYGT 1 cut(s) 53
AgsI TTSAA 6 cut(s) 132, 202, 406, 787, 910, 1025
AjnI CCWGG 1 cut(s) 822
AluBI AGCT 4 cut(s) 24, 100, 757, 841
AluI AGCT 4 cut(s) 24, 100, 757, 841
Alw21I GWGCWC 1 cut(s) 800
Alw26I GTCTC 2 cut(s) 29, 668
AlwI GGATC 2 cut(s) 344, 913
AoxI GGCC 4 cut(s) 83, 179, 729, 820
ApeKI GCWGC 1 cut(s) 754
Asp700I GAANNNNTTC 1 cut(s) 197
AspA2I CCTAGG 1 cut(s) 46
AspS9I GGNCC 3 cut(s) 84, 232, 772
AsuHPI GGTGA 2 cut(s) 491, 710
AvaII GGWCC 2 cut(s) 232, 772
AvrII CCTAGG 1 cut(s) 46
BalI TGGCCA 1 cut(s) 181
BanI GGYRCC 1 cut(s) 374
BauI CACGAG 1 cut(s) 849
BbrPI CACGTG 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 800
BbvI GCAGC 1 cut(s) 766
BccI CCATC 7 cut(s) 236, 326, 342, 350, 440, 728, 930
BciT130I CCWGG 1 cut(s) 824
BciVI GTATCC 1 cut(s) 331
BclI TGATCA 2 cut(s) 661, 679
BcoDI GTCTC 2 cut(s) 29, 668
BfaI CTAG 2 cut(s) 32, 47
BfuI GTATCC 1 cut(s) 331
BglII AGATCT 1 cut(s) 195
BisI GCNGC 1 cut(s) 755
BlnI CCTAGG 1 cut(s) 46
BlsI GCNGC 1 cut(s) 756
Bme1390I CCNGG 1 cut(s) 824
Bme18I GGWCC 2 cut(s) 232, 772
BmgT120I GGNCC 3 cut(s) 84, 232, 772
BmiI GGNNCC 4 cut(s) 86, 234, 376, 603
BmrFI CCNGG 1 cut(s) 824
BmrI ACTGGG 2 cut(s) 35, 214
BmsI GCATC 2 cut(s) 577, 982
BmuI ACTGGG 2 cut(s) 35, 214
BoxI GACNNNNGTC 1 cut(s) 41
BplI GAGNNNNNCTC 2 cut(s) 787, 819
Bsa29I ATCGAT 1 cut(s) 339
BsaAI YACGTR 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 46, 823
BsaWI WCCGGW 2 cut(s) 274, 604
Bsc4I CCNNNNNNNGG 5 cut(s) 47, 242, 258, 632, 1025
Bse1I ACTGG 2 cut(s) 41, 209
Bse3DI GCAATG 1 cut(s) 648
BseBI CCWGG 1 cut(s) 824
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 2 cut(s) 46, 823
BseGI GGATG 5 cut(s) 353, 451, 613, 909, 922
BseLI CCNNNNNNNGG 5 cut(s) 47, 242, 258, 632, 1025
BseMI GCAATG 1 cut(s) 648
BseMII CTCAG 2 cut(s) 302, 663
BseNI ACTGG 2 cut(s) 41, 209
BseRI GAGGAG 3 cut(s) 455, 875, 913
BseXI GCAGC 1 cut(s) 766
Bsh1285I CGRYCG 1 cut(s) 963
BshFI GGCC 4 cut(s) 85, 181, 731, 822
BshNI GGYRCC 1 cut(s) 374
BshVI ATCGAT 1 cut(s) 339
BsiEI CGRYCG 1 cut(s) 963
BsiHKAI GWGCWC 1 cut(s) 800
BsiSI CCGG 3 cut(s) 252, 275, 605
BslFI GGGAC 2 cut(s) 218, 275
BslI CCNNNNNNNGG 5 cut(s) 47, 242, 258, 632, 1025
BsmAI GTCTC 2 cut(s) 29, 668
BsmFI GGGAC 2 cut(s) 218, 275
BsnI GGCC 4 cut(s) 85, 181, 731, 822
Bso31I GGTCTC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 800
Bsp143I GATC 6 cut(s) 195, 336, 340, 661, 679, 918
BspACI CCGC 2 cut(s) 599, 959
BspANI GGCC 4 cut(s) 85, 181, 731, 822
BspCNI CTCAG 2 cut(s) 303, 664
BspDI ATCGAT 1 cut(s) 339
BspHI TCATGA 2 cut(s) 664, 739
BspLI GGNNCC 4 cut(s) 86, 234, 376, 603
BspPI GGATC 2 cut(s) 344, 913
BspQI GCTCTTC 1 cut(s) 683
BspT107I GGYRCC 1 cut(s) 374
BspTNI GGTCTC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 648
BsrI ACTGG 2 cut(s) 41, 209
BssECI CCNNGG 2 cut(s) 46, 823
BssMI GATC 6 cut(s) 195, 336, 340, 661, 679, 918
BssSI CACGAG 1 cut(s) 849
BssT1I CCWWGG 1 cut(s) 46
Bst2BI CACGAG 1 cut(s) 849
Bst2UI CCWGG 1 cut(s) 824
Bst4CI ACNGT 2 cut(s) 427, 560
Bst6I CTCTTC 2 cut(s) 683, 905
BstBAI YACGTR 1 cut(s) 54
BstDEI CTNAG 3 cut(s) 118, 311, 672
BstF5I GGATG 5 cut(s) 353, 451, 613, 909, 922
BstKTI GATC 6 cut(s) 198, 339, 343, 664, 682, 921
BstMAI GTCTC 2 cut(s) 29, 668
BstMBI GATC 6 cut(s) 195, 336, 340, 661, 679, 918
BstMCI CGRYCG 1 cut(s) 963
BstMWI GCNNNNNNNGC 1 cut(s) 596
BstNI CCWGG 1 cut(s) 824
BstPAI GACNNNNGTC 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 822
BstV1I GCAGC 1 cut(s) 766
BstX2I RGATCY 2 cut(s) 195, 918
BstYI RGATCY 2 cut(s) 195, 918
Bsu15I ATCGAT 1 cut(s) 339
BsuI GTATCC 1 cut(s) 331
BsuRI GGCC 4 cut(s) 85, 181, 731, 822
BsuTUI ATCGAT 1 cut(s) 339
BtsCI GGATG 5 cut(s) 353, 451, 613, 909, 922
CciI TCATGA 2 cut(s) 664, 739
Cfr13I GGNCC 3 cut(s) 84, 232, 772
ClaI ATCGAT 1 cut(s) 339
Csp6I GTAC 2 cut(s) 138, 975
CviAII CATG 5 cut(s) 344, 473, 665, 727, 740
CviQI GTAC 2 cut(s) 138, 975
DdeI CTNAG 3 cut(s) 118, 311, 672
DpnI GATC 6 cut(s) 197, 338, 342, 663, 681, 920
DpnII GATC 6 cut(s) 195, 336, 340, 661, 679, 918
DraIII CACNNNGTG 1 cut(s) 476
DrdI GACNNNNNNGTC 1 cut(s) 938
DseDI GACNNNNNNGTC 1 cut(s) 938
EaeI YGGCCR 2 cut(s) 179, 729
Eam1104I CTCTTC 2 cut(s) 683, 905
EarI CTCTTC 2 cut(s) 683, 905
Eco130I CCWWGG 1 cut(s) 46
Eco31I GGTCTC 1 cut(s) 29
Eco47I GGWCC 2 cut(s) 232, 772
Eco72I CACGTG 1 cut(s) 54
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 822
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 5 cut(s) 347, 476, 668, 730, 743
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FaqI GGGAC 2 cut(s) 218, 275
FatI CATG 5 cut(s) 343, 472, 664, 726, 739
FauNDI CATATG 1 cut(s) 684
FbaI TGATCA 2 cut(s) 661, 679
Fnu4HI GCNGC 1 cut(s) 755
FokI GGATG 5 cut(s) 360, 458, 620, 909, 916
Fsp4HI GCNGC 1 cut(s) 755
FspBI CTAG 2 cut(s) 32, 47
GluI GCNGC 1 cut(s) 755
HaeIII GGCC 4 cut(s) 85, 181, 731, 822
HapII CCGG 3 cut(s) 252, 275, 605
Hin1II CATG 5 cut(s) 347, 476, 668, 730, 743
HincII GTYRAC 1 cut(s) 867
HindII GTYRAC 1 cut(s) 867
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 5 cut(s) 313, 668, 761, 863, 1001
HpaII CCGG 3 cut(s) 252, 275, 605
HphI GGTGA 2 cut(s) 491, 710
Hpy166II GTNNAC 2 cut(s) 543, 867
Hpy188I TCNGA 4 cut(s) 312, 586, 673, 1000
Hpy188III TCNNGA 5 cut(s) 32, 665, 740, 877, 943
Hpy8I GTNNAC 2 cut(s) 543, 867
HpyAV CCTTC 2 cut(s) 272, 412
HpyCH4III ACNGT 2 cut(s) 427, 560
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 1 cut(s) 886
HpyF10VI GCNNNNNNNGC 1 cut(s) 596
HpyF3I CTNAG 3 cut(s) 118, 311, 672
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 5 cut(s) 347, 476, 668, 730, 743
Ksp22I TGATCA 2 cut(s) 661, 679
Kzo9I GATC 6 cut(s) 195, 336, 340, 661, 679, 918
LguI GCTCTTC 1 cut(s) 683
Lsp1109I GCAGC 1 cut(s) 766
LweI GCATC 2 cut(s) 577, 982
MaeI CTAG 2 cut(s) 32, 47
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 3 cut(s) 56, 416, 488
MalI GATC 6 cut(s) 197, 338, 342, 663, 681, 920
MboI GATC 6 cut(s) 195, 336, 340, 661, 679, 918
MboII GAAGA 9 cut(s) 96, 190, 205, 512, 533, 700, 799, 922, 928
MfeI CAATTG 1 cut(s) 369
MflI RGATCY 2 cut(s) 195, 918
MhlI GDGCHC 1 cut(s) 800
MlsI TGGCCA 1 cut(s) 181
MluCI AATT 4 cut(s) 132, 161, 369, 1020
MluNI TGGCCA 1 cut(s) 181
MlyI GAGTC 3 cut(s) 322, 755, 872
MmeI TCCRAC 2 cut(s) 97, 799
Mox20I TGGCCA 1 cut(s) 181
MroXI GAANNNNTTC 1 cut(s) 197
MscI TGGCCA 1 cut(s) 181
MseI TTAA 3 cut(s) 96, 365, 639
MslI CAYNNNNRTG 1 cut(s) 477
Msp20I TGGCCA 1 cut(s) 181
MspI CCGG 3 cut(s) 252, 275, 605
MspR9I CCNGG 1 cut(s) 824
MunI CAATTG 1 cut(s) 369
MvaI CCWGG 1 cut(s) 824
MwoI GCNNNNNNNGC 1 cut(s) 596
NdeI CATATG 1 cut(s) 684
NdeII GATC 6 cut(s) 195, 336, 340, 661, 679, 918
NlaIII CATG 5 cut(s) 347, 476, 668, 730, 743
NlaIV GGNNCC 4 cut(s) 86, 234, 376, 603
NmuCI GTSAC 3 cut(s) 56, 416, 488
PagI TCATGA 2 cut(s) 664, 739
PciSI GCTCTTC 1 cut(s) 683
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 2 cut(s) 668, 1001
PkrI GCNGC 1 cut(s) 756
PleI GAGTC 3 cut(s) 321, 755, 871
PmaCI CACGTG 1 cut(s) 54
PmlI CACGTG 1 cut(s) 54
PpsI GAGTC 3 cut(s) 321, 755, 871
Ppu21I YACGTR 1 cut(s) 54
PpuMI RGGWCCY 1 cut(s) 232
PshAI GACNNNNGTC 1 cut(s) 41
Psp5II RGGWCCY 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 822
PspCI CACGTG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 822
PspN4I GGNNCC 4 cut(s) 86, 234, 376, 603
PspPI GGNCC 3 cut(s) 84, 232, 772
PspPPI RGGWCCY 1 cut(s) 232
PsuI RGATCY 2 cut(s) 195, 918
RsaI GTAC 2 cut(s) 139, 976
RsaNI GTAC 2 cut(s) 138, 975
RseI CAYNNNNRTG 1 cut(s) 477
SapI GCTCTTC 1 cut(s) 683
SaqAI TTAA 3 cut(s) 96, 365, 639
SatI GCNGC 1 cut(s) 755
Sau3AI GATC 6 cut(s) 195, 336, 340, 661, 679, 918
Sau96I GGNCC 3 cut(s) 84, 232, 772
SchI GAGTC 3 cut(s) 322, 755, 872
ScrFI CCNGG 1 cut(s) 824
SduI GDGCHC 1 cut(s) 800
SfaNI GCATC 2 cut(s) 577, 982
SinI GGWCC 2 cut(s) 232, 772
SmiMI CAYNNNNRTG 1 cut(s) 477
Sse9I AATT 4 cut(s) 132, 161, 369, 1020
SsiI CCGC 2 cut(s) 599, 959
SspMI CTAG 2 cut(s) 32, 47
StyD4I CCNGG 1 cut(s) 822
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 2 cut(s) 427, 560
TaiI ACGT 1 cut(s) 56
TaqI TCGA 5 cut(s) 339, 387, 578, 805, 963
TasI AATT 4 cut(s) 132, 161, 369, 1020
TatI WGTACW 1 cut(s) 137
TfiI GAWTC 2 cut(s) 668, 1001
Tru1I TTAA 3 cut(s) 96, 365, 639
Tru9I TTAA 3 cut(s) 96, 365, 639
TseFI GTSAC 3 cut(s) 56, 416, 488
TseI GCWGC 1 cut(s) 754
Tsp45I GTSAC 3 cut(s) 56, 416, 488
TspDTI ATGAA 8 cut(s) 102, 200, 206, 212, 513, 657, 701, 715
VpaK11BI GGWCC 2 cut(s) 232, 772
XbaI TCTAGA 1 cut(s) 31
XmaJI CCTAGG 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 2 cut(s) 32, 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.