Prupe.2G194000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0008623
Physical Location & Seq
Forward (+)
23233979 .. 23236950
2972 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G194000.1

Sequence Viewer

Length: 909 bp
ATGAAGATCTTCAACTGGGTTCATAAGAGGCTTCATCAAAGGGTCGTCAAGGATGGGTTTGCTGGGAATGTGAAAAAGAGTGAACTGGAAACCAATGACAAGGACACACAAGCATTTCTCAAACAAGTTGGCCTTGTTAATGTGGATGGGCTTGATGGTTGGAGGGATGGCATTTTAACTATAGGCACCTTTGGTTTCGACCCCCTAAAACCCTCTACCCACCAAAACGAATATTTCGTTCTGGAGAGCGAAGAAGACGATCAGGAAAGCCATGGATTTTCACACAGTGGTAATGATGATGATGATGATGATGATGAACATTATGATCATAGTGTTGAAGATGAAGAACTGAACCCTTTAATGTTTACAACATTTGAACACAGCTTTGAGGATATTGGGTCAAATTTTGATGCCATTGTTCAGAAACCAGCTGATGTGATCCTGACCGTTGATGGTGTCCCTCTTACTCCATTTGAGGGGTCCAGTGAAATCAGTACTAAACCTGATCAGAGTGCTAATGATCAGAGCAAGAATAAGAAAGGTCAGAGAATTACACTGGCTGACTTGTTCCAGGCTGATGTTCCTGATGTTGGTCAACTGAAGCTTGACTCTGGCAAGGTCCAGCCAGAAATGGAGAAAAAAATGAATGCCAGAACAAGGAGTGGCCTAGCATTTGCCAAGAAACTCATCCCTCGCGTCAAAGATGATTCAAGTCCAATCAAAAATATGCAACGACTGATGAGGAGGATGTTGAAGAGGAAGATCCATCCAGCTGAGCTTGAAGTCAAGATTCACAAATCAGATGGCCAGAAGCAGCCCAGTGCGGTAGAGCTCATCTCCAATGTCGAAAATGATGCTTATGAATCGGTTTCTTTGCTTCCAATTCAAGGTGCCCCTTGTGTGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

33.92

Weight (kDa)

5.06

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 185, 890
AccII CGCG 1 cut(s) 696
AciI CCGC 1 cut(s) 824
AclWI GGATC 2 cut(s) 433, 757
AcoI YGGCCR 1 cut(s) 805
AcsI RAATTY 1 cut(s) 403
AcuI CTGAAG 1 cut(s) 620
AdeI CACNNNGTG 1 cut(s) 287
AfaI GTAC 1 cut(s) 496
AfiI CCNNNNNNNGG 4 cut(s) 476, 590, 657, 887
AgsI TTSAA 7 cut(s) 13, 338, 377, 711, 754, 782, 887
AjnI CCWGG 1 cut(s) 570
AluBI AGCT 6 cut(s) 384, 431, 604, 773, 778, 832
AluI AGCT 6 cut(s) 384, 431, 604, 773, 778, 832
Alw21I GWGCWC 2 cut(s) 834, 906
Alw44I GTGCAC 1 cut(s) 902
AlwI GGATC 2 cut(s) 433, 757
AoxI GGCC 3 cut(s) 130, 664, 805
ApaLI GTGCAC 1 cut(s) 902
ApeKI GCWGC 1 cut(s) 814
ApoI RAATTY 1 cut(s) 403
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 480, 619
AvaII GGWCC 2 cut(s) 480, 619
BaeGI GKGCMC 2 cut(s) 895, 906
BalI TGGCCA 1 cut(s) 807
BanI GGYRCC 2 cut(s) 185, 890
BanII GRGCYC 1 cut(s) 834
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 2 cut(s) 834, 906
BbvI GCAGC 1 cut(s) 826
BccI CCATC 7 cut(s) 47, 140, 149, 161, 446, 774, 797
BcgI CGANNNNNNTGC 2 cut(s) 836, 870
BciT130I CCWGG 1 cut(s) 572
BclI TGATCA 3 cut(s) 325, 505, 520
BfaI CTAG 1 cut(s) 668
BfmI CTRYAG 1 cut(s) 180
BglII AGATCT 1 cut(s) 6
BisI GCNGC 1 cut(s) 815
BlpI GCTNAGC 1 cut(s) 774
BlsI GCNGC 1 cut(s) 816
BmcAI AGTACT 1 cut(s) 496
Bme1390I CCNGG 1 cut(s) 572
Bme18I GGWCC 2 cut(s) 480, 619
BmgT120I GGNCC 2 cut(s) 480, 619
BmiI GGNNCC 3 cut(s) 187, 481, 892
BmrFI CCNGG 1 cut(s) 572
BmrI ACTGGG 2 cut(s) 25, 813
BmsI GCATC 2 cut(s) 400, 844
BmuI ACTGGG 2 cut(s) 25, 813
BpiI GAAGAC 1 cut(s) 261
BplI GAGNNNNNCTC 2 cut(s) 821, 853
BpmI CTGGAG 1 cut(s) 263
Bpu1102I GCTNAGC 1 cut(s) 774
BsaJI CCNNGG 1 cut(s) 271
Bsc4I CCNNNNNNNGG 4 cut(s) 476, 590, 657, 887
Bse1I ACTGG 5 cut(s) 20, 90, 483, 561, 819
BseBI CCWGG 1 cut(s) 572
BseDI CCNNGG 1 cut(s) 271
BseGI GGATG 6 cut(s) 58, 151, 172, 687, 753, 766
BseLI CCNNNNNNNGG 4 cut(s) 476, 590, 657, 887
BseMII CTCAG 1 cut(s) 765
BseNI ACTGG 5 cut(s) 20, 90, 483, 561, 819
BseRI GAGGAG 1 cut(s) 757
BseSI GKGCMC 2 cut(s) 895, 906
BseXI GCAGC 1 cut(s) 826
BseYI CCCAGC 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 696
BshFI GGCC 3 cut(s) 132, 666, 807
BshNI GGYRCC 2 cut(s) 185, 890
BsiHKAI GWGCWC 2 cut(s) 834, 906
BslFI GGGAC 1 cut(s) 443
BslI CCNNNNNNNGG 4 cut(s) 476, 590, 657, 887
BsmFI GGGAC 1 cut(s) 443
BsmI GAATGC 1 cut(s) 652
BsnI GGCC 3 cut(s) 132, 666, 807
Bsp1286I GDGCHC 3 cut(s) 834, 895, 906
Bsp143I GATC 7 cut(s) 6, 259, 325, 438, 505, 520, 762
Bsp1720I GCTNAGC 1 cut(s) 774
Bsp19I CCATGG 1 cut(s) 271
BspACI CCGC 1 cut(s) 824
BspANI GGCC 3 cut(s) 132, 666, 807
BspCNI CTCAG 1 cut(s) 766
BspFNI CGCG 1 cut(s) 696
BspLI GGNNCC 3 cut(s) 187, 481, 892
BspPI GGATC 2 cut(s) 433, 757
BspT107I GGYRCC 2 cut(s) 185, 890
BsrI ACTGG 5 cut(s) 20, 90, 483, 561, 819
BssECI CCNNGG 1 cut(s) 271
BssMI GATC 7 cut(s) 6, 259, 325, 438, 505, 520, 762
BssT1I CCWWGG 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 572
Bst4CI ACNGT 2 cut(s) 287, 448
Bst6I CTCTTC 1 cut(s) 749
BstDEI CTNAG 1 cut(s) 774
BstDSI CCRYGG 1 cut(s) 271
BstF5I GGATG 6 cut(s) 58, 151, 172, 687, 753, 766
BstFNI CGCG 1 cut(s) 696
BstKTI GATC 7 cut(s) 9, 262, 328, 441, 508, 523, 765
BstMBI GATC 7 cut(s) 6, 259, 325, 438, 505, 520, 762
BstNI CCWGG 1 cut(s) 572
BstSCI CCNGG 1 cut(s) 570
BstSFI CTRYAG 1 cut(s) 180
BstSLI GKGCMC 2 cut(s) 895, 906
BstUI CGCG 1 cut(s) 696
BstV1I GCAGC 1 cut(s) 826
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 2 cut(s) 6, 762
BstYI RGATCY 2 cut(s) 6, 762
BsuRI GGCC 3 cut(s) 132, 666, 807
BtgI CCRYGG 1 cut(s) 271
BtsCI GGATG 6 cut(s) 58, 151, 172, 687, 753, 766
BtsIMutI CAGTG 5 cut(s) 292, 490, 554, 826, 904
Cfr13I GGNCC 2 cut(s) 480, 619
CseI GACGC 1 cut(s) 685
Csp6I GTAC 1 cut(s) 495
CviAII CATG 1 cut(s) 272
CviQI GTAC 1 cut(s) 495
DdeI CTNAG 1 cut(s) 774
DpnI GATC 7 cut(s) 8, 261, 327, 440, 507, 522, 764
DpnII GATC 7 cut(s) 6, 259, 325, 438, 505, 520, 762
DraIII CACNNNGTG 1 cut(s) 287
EaeI YGGCCR 1 cut(s) 805
Eam1104I CTCTTC 1 cut(s) 749
EarI CTCTTC 1 cut(s) 749
Ecl136II GAGCTC 1 cut(s) 832
Eco130I CCWWGG 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 834
Eco47I GGWCC 2 cut(s) 480, 619
Eco53kI GAGCTC 1 cut(s) 832
Eco57I CTGAAG 1 cut(s) 620
EcoICRI GAGCTC 1 cut(s) 832
EcoRII CCWGG 1 cut(s) 570
EcoT14I CCWWGG 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 834
ErhI CCWWGG 1 cut(s) 271
FaeI CATG 1 cut(s) 275
FaiI YATR 7 cut(s) 24, 182, 273, 324, 330, 728, 861
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FaqI GGGAC 1 cut(s) 443
FatI CATG 1 cut(s) 271
FbaI TGATCA 3 cut(s) 325, 505, 520
Fnu4HI GCNGC 1 cut(s) 815
FokI GGATG 6 cut(s) 65, 158, 179, 674, 753, 760
FriOI GRGCYC 1 cut(s) 834
Fsp4HI GCNGC 1 cut(s) 815
FspBI CTAG 1 cut(s) 668
GluI GCNGC 1 cut(s) 815
GsaI CCCAGC 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 3 cut(s) 132, 666, 807
HgaI GACGC 1 cut(s) 685
Hin1II CATG 1 cut(s) 275
HincII GTYRAC 1 cut(s) 596
HindII GTYRAC 1 cut(s) 596
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 4 cut(s) 608, 707, 790, 863
Hpy166II GTNNAC 4 cut(s) 83, 366, 596, 904
Hpy188I TCNGA 5 cut(s) 423, 510, 525, 546, 802
Hpy188III TCNNGA 5 cut(s) 242, 263, 442, 584, 787
Hpy8I GTNNAC 4 cut(s) 83, 366, 596, 904
HpyCH4III ACNGT 2 cut(s) 287, 448
HpyCH4V TGCA 2 cut(s) 730, 904
HpyF3I CTNAG 1 cut(s) 774
Hsp92II CATG 1 cut(s) 275
Ksp22I TGATCA 3 cut(s) 325, 505, 520
Kzo9I GATC 7 cut(s) 6, 259, 325, 438, 505, 520, 762
Lsp1109I GCAGC 1 cut(s) 826
LweI GCATC 2 cut(s) 400, 844
MaeI CTAG 1 cut(s) 668
MalI GATC 7 cut(s) 8, 261, 327, 440, 507, 522, 764
MboI GATC 7 cut(s) 6, 259, 325, 438, 505, 520, 762
MboII GAAGA 7 cut(s) 16, 263, 266, 350, 356, 766, 772
MflI RGATCY 2 cut(s) 6, 762
MhlI GDGCHC 3 cut(s) 834, 895, 906
MlsI TGGCCA 1 cut(s) 807
MluCI AATT 3 cut(s) 403, 549, 882
MluNI TGGCCA 1 cut(s) 807
MlyI GAGTC 1 cut(s) 602
MmeI TCCRAC 1 cut(s) 140
Mox20I TGGCCA 1 cut(s) 807
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 807
MseI TTAA 3 cut(s) 138, 176, 359
Msp20I TGGCCA 1 cut(s) 807
MspA1I CMGCKG 2 cut(s) 431, 773
MspR9I CCNGG 1 cut(s) 572
Mva1269I GAATGC 1 cut(s) 652
MvaI CCWGG 1 cut(s) 572
MvnI CGCG 1 cut(s) 696
NcoI CCATGG 1 cut(s) 271
NdeII GATC 7 cut(s) 6, 259, 325, 438, 505, 520, 762
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 3 cut(s) 187, 481, 892
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PctI GAATGC 1 cut(s) 652
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 3 cut(s) 707, 790, 863
PkrI GCNGC 1 cut(s) 816
PleI GAGTC 1 cut(s) 602
PpsI GAGTC 1 cut(s) 602
Psp124BI GAGCTC 1 cut(s) 834
Psp6I CCWGG 1 cut(s) 570
PspFI CCCAGC 1 cut(s) 62
PspGI CCWGG 1 cut(s) 570
PspN4I GGNNCC 3 cut(s) 187, 481, 892
PspPI GGNCC 2 cut(s) 480, 619
PsuI RGATCY 2 cut(s) 6, 762
PvuII CAGCTG 2 cut(s) 431, 773
RsaI GTAC 1 cut(s) 496
RsaNI GTAC 1 cut(s) 495
SacI GAGCTC 1 cut(s) 834
SaqAI TTAA 3 cut(s) 138, 176, 359
SatI GCNGC 1 cut(s) 815
Sau3AI GATC 7 cut(s) 6, 259, 325, 438, 505, 520, 762
Sau96I GGNCC 2 cut(s) 480, 619
ScaI AGTACT 1 cut(s) 496
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 1 cut(s) 572
SduI GDGCHC 3 cut(s) 834, 895, 906
SfaNI GCATC 2 cut(s) 400, 844
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 2 cut(s) 480, 619
Sse9I AATT 3 cut(s) 403, 549, 882
SsiI CCGC 1 cut(s) 824
SspI AATATT 1 cut(s) 233
SspMI CTAG 1 cut(s) 668
SstI GAGCTC 1 cut(s) 834
StyD4I CCNGG 1 cut(s) 570
StyI CCWWGG 1 cut(s) 271
TaaI ACNGT 2 cut(s) 287, 448
TaqI TCGA 2 cut(s) 198, 846
TasI AATT 3 cut(s) 403, 549, 882
TatI WGTACW 1 cut(s) 494
TfiI GAWTC 3 cut(s) 707, 790, 863
Tru1I TTAA 3 cut(s) 138, 176, 359
Tru9I TTAA 3 cut(s) 138, 176, 359
TscAI CASTG 4 cut(s) 292, 490, 561, 826
TseI GCWGC 1 cut(s) 814
TspDTI ATGAA 7 cut(s) 11, 17, 23, 330, 357, 659, 876
TspRI CASTG 4 cut(s) 292, 490, 561, 826
VneI GTGCAC 1 cut(s) 902
VpaK11BI GGWCC 2 cut(s) 480, 619
XapI RAATTY 1 cut(s) 403
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 668
ZrmI AGTACT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.