AT2G47520
ERF Family

Ethylene-responsive transcription factor ERF071-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011065
Physical Location & Seq
Reverse (-)
19502776 .. 19503702
927 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G47520.1

Sequence Viewer

Length: 516 bp
ATGTGTGGGGGAGCTATCATTTCTGATTTCATCTGGTCGAAATCTGAGTCAGAACCGAGTCAACTCGGCTCTGTTAGCAGCAGGAAGAAGCGTAAACCCGTCTCAGTGAGTGAAGAAAGAGATGGGAAACGAGAGAGGAAGAATCTGTACAGAGGGATAAGGCAGAGGCCATGGGGCAAATGGGCAGCGGAGATTCGTGACCCGAGCAAAGGTGTACGTGTCTGGCTTGGCACATTCAAAACCGCCGACGAAGCTGCTCGAGCCTACGACGTTGCTGCCATCAAAATCCGTGGCCGGAAAGCCAAACTGAATTTCCCAAACACTCAAGTAGAAGAAGAAGCCGATACTAAACCAGGGGGGAATCAAAATGAGCTGATTTCGGAAAACCAAGTAGAGAGCTTATCGGAGGACCTGATGGCATTGGAGGATTACATGAGATTCTATCAGATTCCGGTTGCCGACGACCAATCGGCGACCGATATTGGAAATTTATGGAGCTATCAAGACTCCAATTAA

Protein Analysis

171

Amino Acids

19.35

Weight (kDa)

6.42

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 50 - 98 8.2e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47520
fragaria_vesca FvH4_2g26080 FvH4_2g26080 FvH4_2g26080
malus_domestica MD11G1306500.v1.1
prunus_persica Prupe.8G264900_v2.0.a1
pyrus_communis pycom03g23120 pycom11g26820
rosa_chinensis RchiOBHm_Chr6g0294441
rosa_laevigata RLG00000011869
rosa_multiflora Rmu_co8464789.1_g000002 Rmu_ssc0000248.1_g000011 Rmu_ssc0000248.1_g000012
rosa_roxburghii Rroxscaffold_7G00173330
rosa_rugosa Rorug06G0244700
rosa_samantha Rh6AG357200 Rh6BG364100 Rh6CG371200 Rh6DG358000
rosa_wichuraiana Rw6G031140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 188, 243
AcoI YGGCCR 1 cut(s) 292
AcsI RAATTY 2 cut(s) 310, 487
AfaI GTAC 2 cut(s) 149, 216
AfiI CCNNNNNNNGG 1 cut(s) 209
AflIII ACRYGT 1 cut(s) 217
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 352
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
AluBI AGCT 5 cut(s) 14, 254, 373, 399, 498
AluI AGCT 5 cut(s) 14, 254, 373, 399, 498
Alw26I GTCTC 1 cut(s) 106
Ama87I CYCGRG 2 cut(s) 202, 258
AoxI GGCC 2 cut(s) 167, 292
ApeKI GCWGC 4 cut(s) 78, 185, 254, 275
ApoI RAATTY 2 cut(s) 310, 487
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AspS9I GGNCC 1 cut(s) 409
AvaI CYCGRG 2 cut(s) 202, 258
AvaII GGWCC 1 cut(s) 409
BarI GAAGNNNNNNTAC 2 cut(s) 131, 163
BbvI GCAGC 4 cut(s) 90, 197, 241, 262
BccI CCATC 3 cut(s) 116, 287, 409
BcgI CGANNNNNNTGC 4 cut(s) 236, 257, 270, 291
BciT130I CCWGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 106
BisI GCNGC 4 cut(s) 79, 186, 255, 276
BlsI GCNGC 4 cut(s) 80, 187, 256, 277
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 1 cut(s) 409
BmeT110I CYCGRG 2 cut(s) 202, 258
BmgT120I GGNCC 1 cut(s) 409
BmrFI CCNGG 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 309
BsaAI YACGTR 1 cut(s) 218
BsaJI CCNNGG 3 cut(s) 170, 289, 353
BsaWI WCCGGW 1 cut(s) 451
Bsc4I CCNNNNNNNGG 1 cut(s) 209
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 3 cut(s) 170, 289, 353
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMII CTCAG 2 cut(s) 36, 117
BseXI GCAGC 4 cut(s) 90, 197, 241, 262
Bsh1285I CGRYCG 1 cut(s) 477
BshFI GGCC 2 cut(s) 169, 294
BsiEI CGRYCG 1 cut(s) 477
BsiHKCI CYCGRG 2 cut(s) 202, 258
BsiSI CCGG 2 cut(s) 295, 452
BslI CCNNNNNNNGG 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 106
BsmBI CGTCTC 1 cut(s) 106
BsnI GGCC 2 cut(s) 169, 294
BsoBI CYCGRG 2 cut(s) 202, 258
Bsp1407I TGTACA 1 cut(s) 147
Bsp19I CCATGG 1 cut(s) 170
BspACI CCGC 2 cut(s) 188, 243
BspANI GGCC 2 cut(s) 169, 294
BspCNI CTCAG 2 cut(s) 37, 116
BsrGI TGTACA 1 cut(s) 147
BssECI CCNNGG 3 cut(s) 170, 289, 353
BssT1I CCWWGG 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 354
BstAUI TGTACA 1 cut(s) 147
BstBAI YACGTR 1 cut(s) 218
BstDEI CTNAG 2 cut(s) 45, 103
BstDSI CCRYGG 2 cut(s) 170, 289
BstMAI GTCTC 1 cut(s) 106
BstMCI CGRYCG 1 cut(s) 477
BstMWI GCNNNNNNNGC 3 cut(s) 75, 251, 260
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstV1I GCAGC 4 cut(s) 90, 197, 241, 262
BsuRI GGCC 2 cut(s) 169, 294
BtgI CCRYGG 2 cut(s) 170, 289
BtsIMutI CAGTG 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 409
Csp6I GTAC 2 cut(s) 148, 215
CspCI CAANNNNNGTGG 2 cut(s) 271, 306
CviAII CATG 2 cut(s) 171, 433
CviQI GTAC 2 cut(s) 148, 215
DdeI CTNAG 2 cut(s) 45, 103
EaeI YGGCCR 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 409
Eco88I CYCGRG 2 cut(s) 202, 258
EcoO109I RGGNCCY 1 cut(s) 409
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 2 cut(s) 174, 436
FaiI YATR 3 cut(s) 172, 434, 493
FatI CATG 2 cut(s) 170, 432
Fnu4HI GCNGC 4 cut(s) 79, 186, 255, 276
Fsp4HI GCNGC 4 cut(s) 79, 186, 255, 276
GluI GCNGC 4 cut(s) 79, 186, 255, 276
HaeIII GGCC 2 cut(s) 169, 294
HapII CCGG 2 cut(s) 295, 452
Hin1II CATG 2 cut(s) 174, 436
HincII GTYRAC 1 cut(s) 62
HindII GTYRAC 1 cut(s) 62
HinfI GANTC 8 cut(s) 47, 58, 142, 193, 361, 438, 448, 506
HpaII CCGG 2 cut(s) 295, 452
Hpy166II GTNNAC 3 cut(s) 62, 95, 215
Hpy188I TCNGA 6 cut(s) 25, 46, 52, 382, 406, 447
Hpy188III TCNNGA 2 cut(s) 197, 503
Hpy8I GTNNAC 3 cut(s) 62, 95, 215
Hpy99I CGWCG 3 cut(s) 251, 272, 464
HpyCH4IV ACGT 2 cut(s) 217, 270
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 251, 260
HpyF3I CTNAG 2 cut(s) 45, 103
HpySE526I ACGT 2 cut(s) 217, 270
Hsp92II CATG 2 cut(s) 174, 436
LmnI GCTCC 2 cut(s) 11, 495
LpnPI CCDG 8 cut(s) 19, 67, 208, 308, 339, 366, 425, 465
Lsp1109I GCAGC 4 cut(s) 90, 197, 241, 262
MaeII ACGT 2 cut(s) 217, 270
MaeIII GTNAC 1 cut(s) 197
MboII GAAGA 5 cut(s) 97, 125, 151, 344, 347
MluCI AATT 3 cut(s) 310, 487, 511
MlyI GAGTC 3 cut(s) 56, 67, 500
MnlI CCTC 5 cut(s) 129, 146, 159, 400, 418
MseI TTAA 1 cut(s) 514
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 2 cut(s) 295, 452
MspR9I CCNGG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 3 cut(s) 75, 251, 260
NcoI CCATGG 1 cut(s) 170
NlaIII CATG 2 cut(s) 174, 436
NmeAIII GCCGAG 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 197
PaeR7I CTCGAG 1 cut(s) 258
PfeI GAWTC 5 cut(s) 142, 193, 361, 438, 448
PkrI GCNGC 4 cut(s) 80, 187, 256, 277
PleI GAGTC 3 cut(s) 55, 66, 500
PpsI GAGTC 3 cut(s) 55, 66, 500
Ppu21I YACGTR 1 cut(s) 218
PpuMI RGGWCCY 1 cut(s) 409
Psp5II RGGWCCY 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspPI GGNCC 1 cut(s) 409
PspPPI RGGWCCY 1 cut(s) 409
PspXI VCTCGAGB 1 cut(s) 258
RsaI GTAC 2 cut(s) 149, 216
RsaNI GTAC 2 cut(s) 148, 215
SaqAI TTAA 1 cut(s) 514
SatI GCNGC 4 cut(s) 79, 186, 255, 276
Sau96I GGNCC 1 cut(s) 409
SchI GAGTC 3 cut(s) 56, 67, 500
ScrFI CCNGG 1 cut(s) 354
SetI ASST 9 cut(s) 16, 214, 220, 256, 273, 375, 401, 414, 500
Sfr274I CTCGAG 1 cut(s) 258
SinI GGWCC 1 cut(s) 409
SlaI CTCGAG 1 cut(s) 258
SmlI CTYRAG 2 cut(s) 258, 324
SmoI CTYRAG 2 cut(s) 258, 324
Sse9I AATT 3 cut(s) 310, 487, 511
SsiI CCGC 2 cut(s) 188, 243
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 1 cut(s) 170
TaiI ACGT 2 cut(s) 220, 273
TaqI TCGA 2 cut(s) 38, 259
TaqII GACCGA 1 cut(s) 491
TasI AATT 3 cut(s) 310, 487, 511
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 5 cut(s) 142, 193, 361, 438, 448
Tru1I TTAA 1 cut(s) 514
Tru9I TTAA 1 cut(s) 514
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 4 cut(s) 78, 185, 254, 275
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 19
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 409
XapI RAATTY 2 cut(s) 310, 487
XcmI CCANNNNNNNNNTGG 1 cut(s) 177
XhoI CTCGAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.