Rh6AG357200

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0011065
Physical Location & Seq
Forward (+)
55658267 .. 55659675
1409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG357200.1

Sequence Viewer

Length: 930 bp
ATGTGTGGCGGTGCTATAATCGCTGAATTCATCCCTCGCAACCGCAGCCGTGTCTCCGGCTCTGAGATATGGCCCAACTCGTCCTTCGCGAAGCTCAATCCCGACAATTTCTTCAACTTAGATCTCACCCCACCTACTCACAAGGACTCACGTCCGAGCAAAACATCCCAACCCTTTTCAGGGGGTCTGGAAGAACAGAAGCCCGCCAAGAGGCAGAGGAAGAACCTCTACAGAGGCATCAGGCAGCGCCCATGGGGCAAATGGGCCGCTGAGATTCGCGACCCCAGAAAAGGAGTCCGAGTCTGGCTCGGTACCTTCAACACCGCTGAAGAAGCAGCCAGAGCTTATGACAGGGAAGCTCGCAAAATCCGTGGCAAGAAAGCCAAGGTTAATTTTCCTAATGAAGATGACCAAGAGTACCACCCCCATCAGACTTATCTGAAAAATTCCAATCCTCATCCAATTCAACCCAATACAGGTAATTTCAATGACAATCATATCCCAAAAGGCTTTGATATGGGTTTTGGTTACGATCTGAACCAGAGTGCAGCATTTCCCTCAAATTCAAATGGTTCAAATGGTTTTAACTCGGTGGTAGTTAATACTGACCCAATTGTTGTTTCTGGGGAAGAGAATTCTGGGTCTGGTTCAGAGGGGACTTACTCCTCTACAGGGTTGGTGGGGAAAGAGAAAGAGGAATCAACACAAAGTAATGCGATTATGGCCGCTGAGGAGAATGAAGTGCAGAAGCTTTCTGAGGAGCTACTGGCGTTTGAGAACTACATGAAGTTCTATCAGATTCCCTATCTGGATGGGCAGTCCACAGCCCCTGTAAATCCTGCGCATCAGGAAAGCATGGTTGGCGATCTGTGGAGCTTTGATGATGAGAATGGGAATGTTCCTGCTTCTGTCACATCTTCCTTTGATTGA

Protein Analysis

309

Amino Acids

34.37

Weight (kDa)

5.64

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 77 - 125 7.6e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47520
fragaria_vesca FvH4_2g26080 FvH4_2g26080 FvH4_2g26080
malus_domestica MD11G1306500.v1.1
prunus_persica Prupe.8G264900_v2.0.a1
pyrus_communis pycom03g23120 pycom11g26820
rosa_chinensis RchiOBHm_Chr6g0294441
rosa_laevigata RLG00000011869
rosa_multiflora Rmu_co8464789.1_g000002 Rmu_ssc0000248.1_g000011 Rmu_ssc0000248.1_g000012
rosa_roxburghii Rroxscaffold_7G00173330
rosa_rugosa Rorug06G0244700
rosa_samantha Rh6AG357200 Rh6BG364100 Rh6CG371200 Rh6DG358000
rosa_wichuraiana Rw6G031140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 843
Acc65I GGTACC 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 311
AccII CGCG 2 cut(s) 89, 279
AciI CCGC 6 cut(s) 9, 43, 204, 267, 324, 726
AcoI YGGCCR 1 cut(s) 723
AcsI RAATTY 4 cut(s) 26, 445, 562, 634
AcuI CTGAAG 1 cut(s) 348
AfaI GTAC 2 cut(s) 313, 419
AfiI CCNNNNNNNGG 6 cut(s) 179, 180, 210, 290, 476, 672
AgsI TTSAA 6 cut(s) 115, 319, 467, 487, 567, 576
AjiI CACGTC 1 cut(s) 152
AjuI GAANNNNNNNTTGG 6 cut(s) 68, 100, 604, 636, 843, 875
AluBI AGCT 6 cut(s) 94, 344, 359, 751, 763, 876
AluI AGCT 6 cut(s) 94, 344, 359, 751, 763, 876
Alw26I GTCTC 1 cut(s) 58
AlwNI CAGNNNCTG 1 cut(s) 830
AoxI GGCC 3 cut(s) 71, 264, 723
ApeKI GCWGC 4 cut(s) 45, 244, 335, 548
ApoI RAATTY 4 cut(s) 26, 445, 562, 634
Asp718I GGTACC 1 cut(s) 311
AspLEI GCGC 2 cut(s) 249, 844
AspS9I GGNCC 2 cut(s) 72, 264
AsuHPI GGTGA 1 cut(s) 118
BanI GGYRCC 1 cut(s) 311
BarI GAAGNNNNNNTAC 2 cut(s) 212, 244
BbvCI CCTCAGC 1 cut(s) 729
BbvI GCAGC 4 cut(s) 57, 256, 347, 560
BccI CCATC 2 cut(s) 435, 806
BceAI ACGGC 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 58
BfmI CTRYAG 2 cut(s) 229, 669
BfoI RGCGCY 1 cut(s) 250
BglI GCCNNNNNGGC 1 cut(s) 255
BglII AGATCT 1 cut(s) 121
BisI GCNGC 6 cut(s) 46, 245, 267, 336, 549, 726
BlsI GCNGC 6 cut(s) 47, 246, 268, 337, 550, 727
BmgBI CACGTC 1 cut(s) 152
BmgT120I GGNCC 2 cut(s) 72, 264
BmiI GGNNCC 1 cut(s) 313
BmsI GCATC 2 cut(s) 246, 853
BoxI GACNNNNGTC 1 cut(s) 150
BplI GAGNNNNNCTC 2 cut(s) 291, 323
Bpu10I CCTNAGC 1 cut(s) 729
BsaJI CCNNGG 3 cut(s) 251, 370, 384
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 6 cut(s) 179, 180, 210, 290, 476, 672
Bse1I ACTGG 1 cut(s) 771
BseDI CCNNGG 3 cut(s) 251, 370, 384
BseGI GGATG 4 cut(s) 30, 164, 457, 817
BseLI CCNNNNNNNGG 6 cut(s) 179, 180, 210, 290, 476, 672
BseMII CTCAG 4 cut(s) 54, 261, 720, 747
BseNI ACTGG 1 cut(s) 771
BseRI GAGGAG 3 cut(s) 655, 746, 773
BseXI GCAGC 4 cut(s) 57, 256, 347, 560
BsgI GTGCAG 2 cut(s) 567, 764
Bsh1236I CGCG 2 cut(s) 89, 279
BshFI GGCC 3 cut(s) 73, 266, 725
BshNI GGYRCC 1 cut(s) 311
BsiSI CCGG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 670
BslI CCNNNNNNNGG 6 cut(s) 179, 180, 210, 290, 476, 672
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 670
BsnI GGCC 3 cut(s) 73, 266, 725
Bsp143I GATC 3 cut(s) 121, 532, 865
Bsp19I CCATGG 1 cut(s) 251
Bsp68I TCGCGA 2 cut(s) 89, 279
BspACI CCGC 6 cut(s) 9, 43, 204, 267, 324, 726
BspANI GGCC 3 cut(s) 73, 266, 725
BspCNI CTCAG 4 cut(s) 55, 262, 721, 748
BspFNI CGCG 2 cut(s) 89, 279
BspLI GGNNCC 1 cut(s) 313
BspT107I GGYRCC 1 cut(s) 311
BsrI ACTGG 1 cut(s) 771
BssECI CCNNGG 3 cut(s) 251, 370, 384
BssMI GATC 3 cut(s) 121, 532, 865
BssT1I CCWWGG 2 cut(s) 251, 384
Bst6I CTCTTC 1 cut(s) 624
BstC8I GCNNGC 2 cut(s) 204, 361
BstDEI CTNAG 5 cut(s) 63, 118, 270, 729, 756
BstDSI CCRYGG 2 cut(s) 251, 370
BstF5I GGATG 4 cut(s) 30, 164, 457, 817
BstFNI CGCG 2 cut(s) 89, 279
BstH2I RGCGCY 1 cut(s) 250
BstHHI GCGC 2 cut(s) 249, 844
BstKTI GATC 3 cut(s) 124, 535, 868
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 3 cut(s) 121, 532, 865
BstMWI GCNNNNNNNGC 7 cut(s) 20, 45, 255, 332, 341, 722, 861
BstPAI GACNNNNGTC 1 cut(s) 150
BstSFI CTRYAG 2 cut(s) 229, 669
BstUI CGCG 2 cut(s) 89, 279
BstV1I GCAGC 4 cut(s) 57, 256, 347, 560
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 3 cut(s) 73, 266, 725
BtgI CCRYGG 2 cut(s) 251, 370
BtrI CACGTC 1 cut(s) 152
BtsCI GGATG 4 cut(s) 30, 164, 457, 817
BtuMI TCGCGA 2 cut(s) 89, 279
Cac8I GCNNGC 2 cut(s) 204, 361
CaiI CAGNNNCTG 1 cut(s) 830
CfoI GCGC 2 cut(s) 249, 844
Cfr13I GGNCC 2 cut(s) 72, 264
Csp6I GTAC 2 cut(s) 312, 418
CspCI CAANNNNNGTGG 2 cut(s) 352, 387
CviAII CATG 3 cut(s) 252, 784, 856
CviQI GTAC 2 cut(s) 312, 418
DdeI CTNAG 5 cut(s) 63, 118, 270, 729, 756
DpnI GATC 3 cut(s) 123, 534, 867
DpnII GATC 3 cut(s) 121, 532, 865
EaeI YGGCCR 1 cut(s) 723
Eam1104I CTCTTC 1 cut(s) 624
EarI CTCTTC 1 cut(s) 624
Eco130I CCWWGG 2 cut(s) 251, 384
Eco57I CTGAAG 1 cut(s) 348
EcoRI GAATTC 2 cut(s) 26, 634
EcoT14I CCWWGG 2 cut(s) 251, 384
ErhI CCWWGG 2 cut(s) 251, 384
FaeI CATG 3 cut(s) 255, 787, 859
FaiI YATR 9 cut(s) 17, 70, 253, 348, 498, 518, 722, 785, 857
FaqI GGGAC 1 cut(s) 670
FatI CATG 3 cut(s) 251, 783, 855
FauI CCCGC 1 cut(s) 211
Fnu4HI GCNGC 6 cut(s) 46, 245, 267, 336, 549, 726
FokI GGATG 4 cut(s) 17, 151, 444, 824
Fsp4HI GCNGC 6 cut(s) 46, 245, 267, 336, 549, 726
FspI TGCGCA 1 cut(s) 843
GlaI GCGC 2 cut(s) 248, 843
GluI GCNGC 6 cut(s) 46, 245, 267, 336, 549, 726
HaeII RGCGCY 1 cut(s) 250
HaeIII GGCC 3 cut(s) 73, 266, 725
HapII CCGG 1 cut(s) 57
HhaI GCGC 2 cut(s) 249, 844
Hin1II CATG 3 cut(s) 255, 787, 859
Hin6I GCGC 2 cut(s) 247, 842
HinP1I GCGC 2 cut(s) 247, 842
HindIII AAGCTT 1 cut(s) 749
HinfI GANTC 6 cut(s) 146, 274, 294, 300, 698, 799
HpaII CCGG 1 cut(s) 57
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 822
Hpy188I TCNGA 9 cut(s) 64, 156, 299, 432, 441, 537, 652, 757, 798
Hpy188III TCNNGA 6 cut(s) 88, 101, 188, 278, 809, 848
Hpy8I GTNNAC 1 cut(s) 822
HpyAV CCTTC 2 cut(s) 94, 325
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 2 cut(s) 548, 745
HpyF10VI GCNNNNNNNGC 7 cut(s) 20, 45, 255, 332, 341, 722, 861
HpyF3I CTNAG 5 cut(s) 63, 118, 270, 729, 756
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 3 cut(s) 255, 787, 859
HspAI GCGC 2 cut(s) 247, 842
KpnI GGTACC 1 cut(s) 315
Kzo9I GATC 3 cut(s) 121, 532, 865
LmnI GCTCC 2 cut(s) 760, 873
Lsp1109I GCAGC 4 cut(s) 57, 256, 347, 560
LweI GCATC 2 cut(s) 246, 853
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 2 cut(s) 527, 910
MalI GATC 3 cut(s) 123, 534, 867
MboI GATC 3 cut(s) 121, 532, 865
MboII GAAGA 7 cut(s) 103, 203, 232, 341, 416, 641, 909
MfeI CAATTG 1 cut(s) 612
MflI RGATCY 1 cut(s) 121
MluCI AATT 9 cut(s) 26, 106, 391, 445, 462, 481, 562, 612, 634
MlyI GAGTC 3 cut(s) 140, 303, 309
MseI TTAA 3 cut(s) 390, 585, 600
MspA1I CMGCKG 3 cut(s) 269, 326, 728
MspI CCGG 1 cut(s) 57
MunI CAATTG 1 cut(s) 612
MvnI CGCG 2 cut(s) 89, 279
MwoI GCNNNNNNNGC 7 cut(s) 20, 45, 255, 332, 341, 722, 861
NcoI CCATGG 1 cut(s) 251
NdeII GATC 3 cut(s) 121, 532, 865
NlaIII CATG 3 cut(s) 255, 787, 859
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 910
NruI TCGCGA 2 cut(s) 89, 279
NsbI TGCGCA 1 cut(s) 843
PcsI WCGNNNNNNNCGW 2 cut(s) 86, 367
PfeI GAWTC 3 cut(s) 274, 698, 799
PkrI GCNGC 6 cut(s) 47, 246, 268, 337, 550, 727
PleI GAGTC 3 cut(s) 140, 302, 308
PpsI GAGTC 3 cut(s) 140, 302, 308
PshAI GACNNNNGTC 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 2 cut(s) 72, 264
PstNI CAGNNNCTG 1 cut(s) 830
PsuI RGATCY 1 cut(s) 121
RruI TCGCGA 2 cut(s) 89, 279
RsaI GTAC 2 cut(s) 313, 419
RsaNI GTAC 2 cut(s) 312, 418
SaqAI TTAA 3 cut(s) 390, 585, 600
SatI GCNGC 6 cut(s) 46, 245, 267, 336, 549, 726
Sau3AI GATC 3 cut(s) 121, 532, 865
Sau96I GGNCC 2 cut(s) 72, 264
SchI GAGTC 3 cut(s) 140, 303, 309
SfaNI GCATC 2 cut(s) 246, 853
SfcI CTRYAG 2 cut(s) 229, 669
Sse9I AATT 9 cut(s) 26, 106, 391, 445, 462, 481, 562, 612, 634
SsiI CCGC 6 cut(s) 9, 43, 204, 267, 324, 726
StyI CCWWGG 2 cut(s) 251, 384
TaiI ACGT 1 cut(s) 154
TasI AATT 9 cut(s) 26, 106, 391, 445, 462, 481, 562, 612, 634
TauI GCSGC 2 cut(s) 269, 728
TfiI GAWTC 3 cut(s) 274, 698, 799
Tru1I TTAA 3 cut(s) 390, 585, 600
Tru9I TTAA 3 cut(s) 390, 585, 600
TseFI GTSAC 1 cut(s) 910
TseI GCWGC 4 cut(s) 45, 244, 335, 548
Tsp45I GTSAC 1 cut(s) 910
TspDTI ATGAA 4 cut(s) 19, 417, 753, 800
TspGWI ACGGA 1 cut(s) 359
XapI RAATTY 4 cut(s) 26, 445, 562, 634
XcmI CCANNNNNNNNNTGG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.