Rroxscaffold_7G00173330

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011065
Physical Location & Seq
Reverse (-)
13377030 .. 13378177
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00173330.1

Sequence Viewer

Length: 948 bp
ATGTGTGGCGGTGCTATAATCGCTGAATTCATCCCTCGCAACCGCGGCCGCCGTGGCTCCGCTTCGTCTGACATATGGCCCAACTCGCCCTTCGAGAAGCTCAATCCCGACGATTTCTTCAACTTAGATCTCACCCCACCTACTCACAAGTACTCACCTCCGAGCAAAACATCCCAACCTTTTTCAGGGGGTCTGGAAGAACAGAAGCCCGCCAAGAGGCAGAGGAAGAACCTCTACAGAGGCATCAGGCAGCGCCCATGGGGCAAATGGGCCGCTGAGATTCGTGACCCCAGAAAAGGAGTCCGAGTCTGGCTCGGTACCTTCAACACCGCTGAAGAAGCAGCCAGAGCTTATGACAGGGAGGCTCGCAAAATCCGTGGCAAGAAAGCCAAGGTTAATTTTCCTAATGAAGATGACCAAGAGTACCCCCATCAGACTTATCTGAAAAATTCCAATCCTCATCCATTTCAACCCAATACAGGTAATTTCAATGGCAATCATATGCCAAAGGGATTTGATATGGGTTTTGGTTATGATCTGAATCAGAGTGCAGCATTTCCCTCAAATTCAAATGGTTCAGATGGTTTTAACTCGGTGGTGGTTAAGACTGACCCAATTGTTGTTTCTGGGGAAGAAAATTCTGGGTCTGGTTCAGAGGGGACTTACTCCTCTACAGGGTTGGTGGGTTGCAATCACAATGGGAAAGAGAGAGAGGAATCAACACAAGGTAATGCGATTGTGGCCGTTGAGGAGAATGAAGTGCAGAAGCTTTCTGAGGAGCTACTGGCGTTTGAGAACTACATGAAGTTCTATCAGATTCCCTATCTGGACGGGCAGTCCACAGCCCCTGTAAATCCTGCTGCGCAGGTAAGCATGGTTGGCGATCTGTGGAGCTTTGATGATGAGAATCAGAATGTTCCTGCTTCTGTCACATCTTCCTTCGATTGA

Protein Analysis

315

Amino Acids

34.97

Weight (kDa)

5.68

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 79 - 127 7.8e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47520
fragaria_vesca FvH4_2g26080 FvH4_2g26080 FvH4_2g26080
malus_domestica MD11G1306500.v1.1
prunus_persica Prupe.8G264900_v2.0.a1
pyrus_communis pycom03g23120 pycom11g26820
rosa_chinensis RchiOBHm_Chr6g0294441
rosa_laevigata RLG00000011869
rosa_multiflora Rmu_co8464789.1_g000002 Rmu_ssc0000248.1_g000011 Rmu_ssc0000248.1_g000012
rosa_roxburghii Rroxscaffold_7G00173330
rosa_rugosa Rorug06G0244700
rosa_samantha Rh6AG357200 Rh6BG364100 Rh6CG371200 Rh6DG358000
rosa_wichuraiana Rw6G031140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 864
Acc36I ACCTGC 1 cut(s) 856
Acc65I GGTACC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 317
AccII CGCG 1 cut(s) 45
AciI CCGC 8 cut(s) 9, 43, 45, 49, 60, 210, 273, 330
AcoI YGGCCR 2 cut(s) 46, 741
AcsI RAATTY 4 cut(s) 26, 448, 565, 637
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 3 cut(s) 152, 319, 425
AfiI CCNNNNNNNGG 5 cut(s) 185, 216, 296, 479, 675
AgsI TTSAA 5 cut(s) 121, 325, 470, 490, 570
AhdI GACNNNNNGTC 1 cut(s) 835
AjuI GAANNNNNNNTTGG 4 cut(s) 74, 106, 607, 639
AluBI AGCT 5 cut(s) 100, 350, 769, 781, 894
AluI AGCT 5 cut(s) 100, 350, 769, 781, 894
AlwNI CAGNNNCTG 1 cut(s) 848
AoxI GGCC 4 cut(s) 46, 77, 270, 741
ApeKI GCWGC 4 cut(s) 250, 341, 551, 860
ApoI RAATTY 4 cut(s) 26, 448, 565, 637
Asp718I GGTACC 1 cut(s) 317
AspLEI GCGC 2 cut(s) 255, 865
AspS9I GGNCC 2 cut(s) 78, 270
AsuHPI GGTGA 2 cut(s) 124, 147
BanI GGYRCC 1 cut(s) 317
BarI GAAGNNNNNNTAC 2 cut(s) 218, 250
BbvI GCAGC 4 cut(s) 262, 353, 563, 847
BccI CCATC 2 cut(s) 438, 575
BceAI ACGGC 2 cut(s) 36, 728
BfmI CTRYAG 2 cut(s) 235, 672
BfoI RGCGCY 1 cut(s) 256
BfuAI ACCTGC 1 cut(s) 856
BglI GCCNNNNNGGC 2 cut(s) 54, 261
BglII AGATCT 1 cut(s) 127
BisI GCNGC 7 cut(s) 46, 49, 251, 273, 342, 552, 861
BlsI GCNGC 7 cut(s) 47, 50, 252, 274, 343, 553, 862
BmcAI AGTACT 1 cut(s) 152
BmeRI GACNNNNNGTC 1 cut(s) 835
BmgT120I GGNCC 2 cut(s) 78, 270
BmiI GGNNCC 2 cut(s) 58, 319
BmsI GCATC 1 cut(s) 252
BplI GAGNNNNNCTC 2 cut(s) 297, 329
BsaBI GATNNNNATC 2 cut(s) 540, 906
BsaJI CCNNGG 5 cut(s) 43, 52, 257, 376, 390
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 5 cut(s) 185, 216, 296, 479, 675
Bse1I ACTGG 1 cut(s) 789
Bse8I GATNNNNATC 2 cut(s) 540, 906
BseDI CCNNGG 5 cut(s) 43, 52, 257, 376, 390
BseGI GGATG 3 cut(s) 30, 170, 460
BseJI GATNNNNATC 2 cut(s) 540, 906
BseLI CCNNNNNNNGG 5 cut(s) 185, 216, 296, 479, 675
BseMII CTCAG 2 cut(s) 267, 765
BseNI ACTGG 1 cut(s) 789
BseRI GAGGAG 3 cut(s) 658, 764, 791
BseX3I CGGCCG 1 cut(s) 46
BseXI GCAGC 4 cut(s) 262, 353, 563, 847
BsgI GTGCAG 2 cut(s) 570, 782
Bsh1236I CGCG 1 cut(s) 45
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 4 cut(s) 48, 79, 272, 743
BshNI GGYRCC 1 cut(s) 317
BsiEI CGRYCG 1 cut(s) 49
BslFI GGGAC 1 cut(s) 673
BslI CCNNNNNNNGG 5 cut(s) 185, 216, 296, 479, 675
BsmFI GGGAC 1 cut(s) 673
BsnI GGCC 4 cut(s) 48, 79, 272, 743
Bsp143I GATC 3 cut(s) 127, 535, 883
Bsp19I CCATGG 1 cut(s) 257
BspACI CCGC 8 cut(s) 9, 43, 45, 49, 60, 210, 273, 330
BspANI GGCC 4 cut(s) 48, 79, 272, 743
BspCNI CTCAG 2 cut(s) 268, 766
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 2 cut(s) 58, 319
BspMI ACCTGC 1 cut(s) 856
BspT107I GGYRCC 1 cut(s) 317
BsrI ACTGG 1 cut(s) 789
BssECI CCNNGG 5 cut(s) 43, 52, 257, 376, 390
BssMI GATC 3 cut(s) 127, 535, 883
BssT1I CCWWGG 2 cut(s) 257, 390
BstC8I GCNNGC 2 cut(s) 210, 367
BstDEI CTNAG 3 cut(s) 124, 276, 774
BstDSI CCRYGG 4 cut(s) 43, 52, 257, 376
BstENI CCTNNNNNAGG 1 cut(s) 183
BstF5I GGATG 3 cut(s) 30, 170, 460
BstFNI CGCG 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 256
BstHHI GCGC 2 cut(s) 255, 865
BstKTI GATC 3 cut(s) 130, 538, 886
BstMBI GATC 3 cut(s) 127, 535, 883
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 9 cut(s) 20, 45, 54, 85, 261, 338, 347, 740, 879
BstSFI CTRYAG 2 cut(s) 235, 672
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 4 cut(s) 262, 353, 563, 847
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BstZI CGGCCG 1 cut(s) 46
BsuRI GGCC 4 cut(s) 48, 79, 272, 743
BtgI CCRYGG 4 cut(s) 43, 52, 257, 376
BtsCI GGATG 3 cut(s) 30, 170, 460
BveI ACCTGC 1 cut(s) 856
Cac8I GCNNGC 2 cut(s) 210, 367
CaiI CAGNNNCTG 1 cut(s) 848
CciNI GCGGCCGC 1 cut(s) 46
CfoI GCGC 2 cut(s) 255, 865
Cfr13I GGNCC 2 cut(s) 78, 270
Cfr42I CCGCGG 1 cut(s) 46
Csp6I GTAC 3 cut(s) 151, 318, 424
CspCI CAANNNNNGTGG 2 cut(s) 358, 393
CviAII CATG 3 cut(s) 258, 802, 874
CviQI GTAC 3 cut(s) 151, 318, 424
DdeI CTNAG 3 cut(s) 124, 276, 774
DpnI GATC 3 cut(s) 129, 537, 885
DpnII GATC 3 cut(s) 127, 535, 883
DriI GACNNNNNGTC 1 cut(s) 835
EaeI YGGCCR 2 cut(s) 46, 741
EagI CGGCCG 1 cut(s) 46
Eam1105I GACNNNNNGTC 1 cut(s) 835
EclXI CGGCCG 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 257, 390
Eco52I CGGCCG 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 354
EcoNI CCTNNNNNAGG 1 cut(s) 183
EcoRI GAATTC 1 cut(s) 26
EcoT14I CCWWGG 2 cut(s) 257, 390
ErhI CCWWGG 2 cut(s) 257, 390
FaeI CATG 3 cut(s) 261, 805, 877
FaqI GGGAC 1 cut(s) 673
FatI CATG 3 cut(s) 257, 801, 873
FauI CCCGC 1 cut(s) 217
FauNDI CATATG 2 cut(s) 74, 501
Fnu4HI GCNGC 7 cut(s) 46, 49, 251, 273, 342, 552, 861
FokI GGATG 3 cut(s) 17, 157, 447
Fsp4HI GCNGC 7 cut(s) 46, 49, 251, 273, 342, 552, 861
FspI TGCGCA 1 cut(s) 864
GlaI GCGC 2 cut(s) 254, 864
GluI GCNGC 7 cut(s) 46, 49, 251, 273, 342, 552, 861
HaeII RGCGCY 1 cut(s) 256
HaeIII GGCC 4 cut(s) 48, 79, 272, 743
HhaI GCGC 2 cut(s) 255, 865
Hin1II CATG 3 cut(s) 261, 805, 877
Hin6I GCGC 2 cut(s) 253, 863
HinP1I GCGC 2 cut(s) 253, 863
HindIII AAGCTT 1 cut(s) 767
HinfI GANTC 7 cut(s) 280, 300, 306, 541, 716, 817, 907
HphI GGTGA 2 cut(s) 124, 147
Hpy166II GTNNAC 1 cut(s) 840
Hpy188III TCNNGA 5 cut(s) 94, 107, 194, 284, 827
Hpy8I GTNNAC 1 cut(s) 840
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 100, 331
HpyCH4V TGCA 3 cut(s) 551, 690, 763
HpyF10VI GCNNNNNNNGC 9 cut(s) 20, 45, 54, 85, 261, 338, 347, 740, 879
HpyF3I CTNAG 3 cut(s) 124, 276, 774
Hsp92II CATG 3 cut(s) 261, 805, 877
HspAI GCGC 2 cut(s) 253, 863
KpnI GGTACC 1 cut(s) 321
KspI CCGCGG 1 cut(s) 46
Kzo9I GATC 3 cut(s) 127, 535, 883
LmnI GCTCC 3 cut(s) 62, 778, 891
Lsp1109I GCAGC 4 cut(s) 262, 353, 563, 847
LweI GCATC 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 284, 928
MalI GATC 3 cut(s) 129, 537, 885
MboI GATC 3 cut(s) 127, 535, 883
MboII GAAGA 7 cut(s) 109, 209, 238, 347, 422, 644, 927
MfeI CAATTG 1 cut(s) 615
MflI RGATCY 1 cut(s) 127
MluCI AATT 7 cut(s) 26, 397, 448, 484, 565, 615, 637
MlyI GAGTC 2 cut(s) 309, 315
MseI TTAA 3 cut(s) 396, 588, 603
MspA1I CMGCKG 3 cut(s) 45, 275, 332
MunI CAATTG 1 cut(s) 615
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 9 cut(s) 20, 45, 54, 85, 261, 338, 347, 740, 879
NcoI CCATGG 1 cut(s) 257
NdeI CATATG 2 cut(s) 74, 501
NdeII GATC 3 cut(s) 127, 535, 883
NlaIII CATG 3 cut(s) 261, 805, 877
NlaIV GGNNCC 2 cut(s) 58, 319
NmuCI GTSAC 2 cut(s) 284, 928
NotI GCGGCCGC 1 cut(s) 46
NsbI TGCGCA 1 cut(s) 864
PcsI WCGNNNNNNNCGW 1 cut(s) 373
PfeI GAWTC 5 cut(s) 280, 541, 716, 817, 907
PkrI GCNGC 7 cut(s) 47, 50, 252, 274, 343, 553, 862
PleI GAGTC 2 cut(s) 308, 314
PpsI GAGTC 2 cut(s) 308, 314
PspN4I GGNNCC 2 cut(s) 58, 319
PspPI GGNCC 2 cut(s) 78, 270
PstNI CAGNNNCTG 1 cut(s) 848
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 3 cut(s) 152, 319, 425
RsaNI GTAC 3 cut(s) 151, 318, 424
SacII CCGCGG 1 cut(s) 46
SaqAI TTAA 3 cut(s) 396, 588, 603
SatI GCNGC 7 cut(s) 46, 49, 251, 273, 342, 552, 861
Sau3AI GATC 3 cut(s) 127, 535, 883
Sau96I GGNCC 2 cut(s) 78, 270
ScaI AGTACT 1 cut(s) 152
SchI GAGTC 2 cut(s) 309, 315
SfaNI GCATC 1 cut(s) 252
SfcI CTRYAG 2 cut(s) 235, 672
Sfr303I CCGCGG 1 cut(s) 46
SgrBI CCGCGG 1 cut(s) 46
Sse9I AATT 7 cut(s) 26, 397, 448, 484, 565, 615, 637
SsiI CCGC 8 cut(s) 9, 43, 45, 49, 60, 210, 273, 330
StyI CCWWGG 2 cut(s) 257, 390
TaqI TCGA 2 cut(s) 93, 942
TasI AATT 7 cut(s) 26, 397, 448, 484, 565, 615, 637
TatI WGTACW 1 cut(s) 150
TauI GCSGC 3 cut(s) 48, 51, 275
TfiI GAWTC 5 cut(s) 280, 541, 716, 817, 907
Tru1I TTAA 3 cut(s) 396, 588, 603
Tru9I TTAA 3 cut(s) 396, 588, 603
TseFI GTSAC 2 cut(s) 284, 928
TseI GCWGC 4 cut(s) 250, 341, 551, 860
Tsp45I GTSAC 2 cut(s) 284, 928
TspDTI ATGAA 4 cut(s) 19, 423, 771, 818
TspGWI ACGGA 1 cut(s) 365
XagI CCTNNNNNAGG 1 cut(s) 183
XapI RAATTY 4 cut(s) 26, 448, 565, 637
XcmI CCANNNNNNNNNTGG 1 cut(s) 264
ZrmI AGTACT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.