Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0011065

Physical Location & Seq

Genomic Coordinates Reverse (-)

42076399 .. 42077740

Gene Structure 1342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1306500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTGCGGTGGTGCTATAATCGCTAATTTCATCCCTCGCGACCGTCGCCGTTGTGTCACCGCCTCTGACATATGGCCGGACTCTCCCTTCGCCAAGTTCGATCCCGACACTTTCTTCGACTGCAATCCCACCCCGGTTAATCGCACCGACTCAACTCCGCGTAAATTATCCCAACCCATTTCAGGTGATGTACAAGAAGAGAAGCCGGCTAAGAGGCAGAGGAAGAACCTCTACCGAGGCATCAGGCAGCGTCCGTGGGGCAAATGGGCCGCCGAGATTCGTGATCCCAGAAAAGGGGTTCGAGTTTGGCTCGGTACCTTCAACACCGCCGAGGAGGCGGCCCGAGCTTACGACAGGGAGGCTCGCAAAATCCGCGGCAAAAAAGCCAAGGTCAATTTCCCCAACGAAGACGACCACCTCCCCGCCAAGACGTATCTGAGAAACCCAAATACTAATCTGTATCAACCCAAAAGCTTTGATTTGGGATTTGGGTATGATCTGAACCAGATTGCGACATTTCCCTCCAATTCCATGTCGATTGAGTTTAACTCCAAGGCTAATGTGAACACCGACCCAATTGTTATTTCCGGGGAAGAAAACTCTGGGTGTGGTTCAGATGGCGCTTTCTCCTCAACGGGCTTTCTGGGTTGCAATCAGAACGGGAGCGGCGGTTGTCACGGCGGAGCTGAGCTGACAGAAGTGGAGGAAACTAAAGAAGGGAAACGGAGCTTGGAGGCGATTGCAAGAATGGAAGAGGACGAAGTGCAGAAGCTTTCCGAGGAGCTAATGGCGTATGAGAGCATGATGAAGTTCTATCAGATTCCGTATCTGGATGGGCAGTCCACGGCGGCTCCTCAGAATCCTCCGCCTCAGGAAAGCACCCTTGGTGATGATCTCTGGAGCTTCGATGACGACCATAGCGTTCCTGCTTCCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0034059 GO:0036293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0070482 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

313

Amino Acids

34.79

Weight (kDa)

5.25

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	78 - 126	7.7e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47520
fragaria_vesca	FvH4_2g26080 FvH4_2g26080 FvH4_2g26080
malus_domestica	MD11G1306500.v1.1
prunus_persica	Prupe.8G264900_v2.0.a1
pyrus_communis	pycom03g23120 pycom11g26820
rosa_chinensis	RchiOBHm_Chr6g0294441
rosa_laevigata	RLG00000011869
rosa_multiflora	Rmu_co8464789.1_g000002 Rmu_ssc0000248.1_g000011 Rmu_ssc0000248.1_g000012
rosa_roxburghii	Rroxscaffold_7G00173330
rosa_rugosa	Rorug06G0244700
rosa_samantha	Rh6AG357200 Rh6BG364100 Rh6CG371200 Rh6DG358000
rosa_wichuraiana	Rw6G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	314
AccBSI	CCGCTC	1 cut(s)	666
AccII	CGCG	3 cut(s)	39, 160, 375
AclWI	GGATC	2 cut(s)	95, 278
AcoI	YGGCCR	1 cut(s)	74
AfaI	GTAC	2 cut(s)	192, 316
AfiI	CCNNNNNNNGG	3 cut(s)	182, 293, 294
AgsI	TTSAA	1 cut(s)	322
AjuI	GAANNNNNNNTTGG	8 cut(s)	380, 412, 568, 600, 713, 745, 867, 899
AluBI	AGCT	8 cut(s)	347, 474, 686, 691, 729, 772, 784, 903
AluI	AGCT	8 cut(s)	347, 474, 686, 691, 729, 772, 784, 903
AlwI	GGATC	2 cut(s)	95, 278
Ama87I	CYCGRG	1 cut(s)	342
AoxI	GGCC	3 cut(s)	74, 267, 339
ApeKI	GCWGC	1 cut(s)	247
ArsI	GACNNNNNNTTYG	4 cut(s)	71, 98, 103, 130
Asp718I	GGTACC	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	623
AspS9I	GGNCC	2 cut(s)	267, 340
AsuC2I	CCSGG	2 cut(s)	134, 589
AsuHPI	GGTGA	3 cut(s)	49, 197, 899
AvaI	CYCGRG	1 cut(s)	342
AxyI	CCTNAGG	1 cut(s)	870
BanI	GGYRCC	1 cut(s)	314
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
BbsI	GAAGAC	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	2 cut(s)	611, 827
BceAI	ACGGC	3 cut(s)	33, 694, 861
BcnI	CCSGG	2 cut(s)	134, 589
BfoI	RGCGCY	1 cut(s)	624
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	6 cut(s)	248, 270, 339, 376, 667, 849
BlpI	GCTNAGC	1 cut(s)	687
BlsI	GCNGC	6 cut(s)	249, 271, 340, 377, 668, 850
Bme1390I	CCNGG	2 cut(s)	134, 589
BmeT110I	CYCGRG	1 cut(s)	342
BmgT120I	GGNCC	2 cut(s)	267, 340
BmiI	GGNNCC	2 cut(s)	316, 852
BmrFI	CCNGG	2 cut(s)	134, 589
BmsI	GCATC	1 cut(s)	249
BpiI	GAAGAC	1 cut(s)	414
BplI	GAGNNNNNCTC	4 cut(s)	294, 326, 533, 565
BpmI	CTGGAG	1 cut(s)	919
Bpu1102I	GCTNAGC	1 cut(s)	687
BpuMI	CCSGG	2 cut(s)	134, 589
BsaXI	ACNNNNNCTCC	4 cut(s)	655, 685, 835, 865
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 293, 294
Bse118I	RCCGGY	1 cut(s)	205
Bse21I	CCTNAGG	1 cut(s)	870
BseGI	GGATG	2 cut(s)	30, 838
BseLI	CCNNNNNNNGG	3 cut(s)	182, 293, 294
BseMII	CTCAG	4 cut(s)	428, 678, 869, 884
BseRI	GAGGAG	4 cut(s)	347, 619, 794, 843
BseXI	GCAGC	1 cut(s)	259
BsgI	GTGCAG	1 cut(s)	785
Bsh1236I	CGCG	3 cut(s)	39, 160, 375
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	3 cut(s)	76, 269, 341
BshNI	GGYRCC	1 cut(s)	314
BsiEI	CGRYCG	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	342
BsiSI	CCGG	4 cut(s)	77, 134, 206, 588
BslI	CCNNNNNNNGG	3 cut(s)	182, 293, 294
BsnI	GGCC	3 cut(s)	76, 269, 341
BsoBI	CYCGRG	1 cut(s)	342
Bsp1407I	TGTACA	1 cut(s)	190
Bsp143I	GATC	4 cut(s)	100, 283, 496, 892
Bsp1720I	GCTNAGC	1 cut(s)	687
Bsp68I	TCGCGA	1 cut(s)	39
BspANI	GGCC	3 cut(s)	76, 269, 341
BspCNI	CTCAG	4 cut(s)	429, 679, 868, 883
BspFNI	CGCG	3 cut(s)	39, 160, 375
BspLI	GGNNCC	2 cut(s)	316, 852
BspPI	GGATC	2 cut(s)	95, 278
BspT107I	GGYRCC	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	666
BsrFI	RCCGGY	1 cut(s)	205
BsrGI	TGTACA	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	205
BssMI	GATC	4 cut(s)	100, 283, 496, 892
BssT1I	CCWWGG	3 cut(s)	387, 552, 883
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	2 cut(s)	192, 747
BstAUI	TGTACA	1 cut(s)	190
BstC8I	GCNNGC	2 cut(s)	207, 364
BstDEI	CTNAG	5 cut(s)	210, 437, 687, 855, 870
BstDSI	CCRYGG	3 cut(s)	254, 373, 843
BstF5I	GGATG	2 cut(s)	30, 838
BstFNI	CGCG	3 cut(s)	39, 160, 375
BstH2I	RGCGCY	1 cut(s)	624
BstHHI	GCGC	1 cut(s)	623
BstKTI	GATC	4 cut(s)	103, 286, 499, 895
BstMBI	GATC	4 cut(s)	100, 283, 496, 892
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 45, 335, 344, 372
BstSCI	CCNGG	2 cut(s)	132, 587
BstUI	CGCG	3 cut(s)	39, 160, 375
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	414
Bsu36I	CCTNAGG	1 cut(s)	870
BsuRI	GGCC	3 cut(s)	76, 269, 341
BtgI	CCRYGG	3 cut(s)	254, 373, 843
BtsCI	GGATG	2 cut(s)	30, 838
BtuMI	TCGCGA	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	207, 364
CfoI	GCGC	1 cut(s)	623
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	2 cut(s)	267, 340
Cfr42I	CCGCGG	1 cut(s)	376
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	2 cut(s)	191, 315
CviAII	CATG	2 cut(s)	532, 802
CviQI	GTAC	2 cut(s)	191, 315
DdeI	CTNAG	5 cut(s)	210, 437, 687, 855, 870
DpnI	GATC	4 cut(s)	102, 285, 498, 894
DpnII	GATC	4 cut(s)	100, 283, 496, 892
EaeI	YGGCCR	1 cut(s)	74
Eam1104I	CTCTTC	2 cut(s)	192, 747
EarI	CTCTTC	2 cut(s)	192, 747
EciI	GGCGGA	2 cut(s)	696, 855
Eco130I	CCWWGG	3 cut(s)	387, 552, 883
Eco81I	CCTNAGG	1 cut(s)	870
Eco88I	CYCGRG	1 cut(s)	342
EcoT14I	CCWWGG	3 cut(s)	387, 552, 883
ErhI	CCWWGG	3 cut(s)	387, 552, 883
FaeI	CATG	2 cut(s)	535, 805
FaiI	YATR	8 cut(s)	17, 71, 73, 495, 533, 795, 803, 918
FatI	CATG	2 cut(s)	531, 801
FauI	CCCGC	1 cut(s)	430
FauNDI	CATATG	1 cut(s)	71
Fnu4HI	GCNGC	6 cut(s)	248, 270, 339, 376, 667, 849
FokI	GGATG	2 cut(s)	17, 845
Fsp4HI	GCNGC	6 cut(s)	248, 270, 339, 376, 667, 849
GlaI	GCGC	1 cut(s)	622
GluI	GCNGC	6 cut(s)	248, 270, 339, 376, 667, 849
GsuI	CTGGAG	1 cut(s)	919
HaeII	RGCGCY	1 cut(s)	624
HaeIII	GGCC	3 cut(s)	76, 269, 341
HapII	CCGG	4 cut(s)	77, 134, 206, 588
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	623
Hin1II	CATG	2 cut(s)	535, 805
Hin6I	GCGC	1 cut(s)	621
HinP1I	GCGC	1 cut(s)	621
HindIII	AAGCTT	2 cut(s)	472, 770
HinfI	GANTC	5 cut(s)	80, 149, 277, 820, 859
HpaII	CCGG	4 cut(s)	77, 134, 206, 588
HphI	GGTGA	3 cut(s)	49, 197, 899
Hpy166II	GTNNAC	2 cut(s)	565, 843
Hpy188I	TCNGA	8 cut(s)	67, 438, 501, 616, 657, 778, 819, 858
Hpy188III	TCNNGA	6 cut(s)	38, 104, 281, 830, 872, 898
Hpy8I	GTNNAC	2 cut(s)	565, 843
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	3 cut(s)	97, 328, 710
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	431
HpyCH4V	TGCA	4 cut(s)	123, 651, 743, 766
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 45, 335, 344, 372
HpyF3I	CTNAG	5 cut(s)	210, 437, 687, 855, 870
HpySE526I	ACGT	1 cut(s)	431
Hsp92II	CATG	2 cut(s)	535, 805
HspAI	GCGC	1 cut(s)	621
KpnI	GGTACC	1 cut(s)	318
KroI	GCCGGC	1 cut(s)	205
KroNI	GCCGGC	1 cut(s)	207
KspI	CCGCGG	1 cut(s)	376
Kzo9I	GATC	4 cut(s)	100, 283, 496, 892
LmnI	GCTCC	6 cut(s)	663, 683, 726, 781, 856, 900
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	1 cut(s)	249
MaeII	ACGT	1 cut(s)	431
MaeIII	GTNAC	2 cut(s)	55, 674
MalI	GATC	4 cut(s)	102, 285, 498, 894
MbiI	CCGCTC	1 cut(s)	666
MboI	GATC	4 cut(s)	100, 283, 496, 892
MboII	GAAGA	6 cut(s)	106, 209, 235, 419, 605, 764
MfeI	CAATTG	1 cut(s)	576
MluCI	AATT	5 cut(s)	25, 164, 394, 526, 576
MlyI	GAGTC	2 cut(s)	74, 143
MroNI	GCCGGC	1 cut(s)	205
MseI	TTAA	2 cut(s)	138, 546
MspA1I	CMGCKG	1 cut(s)	375
MspI	CCGG	4 cut(s)	77, 134, 206, 588
MspR9I	CCNGG	2 cut(s)	134, 589
MunI	CAATTG	1 cut(s)	576
MvnI	CGCG	3 cut(s)	39, 160, 375
MwoI	GCNNNNNNNGC	5 cut(s)	20, 45, 335, 344, 372
NaeI	GCCGGC	1 cut(s)	207
NciI	CCSGG	2 cut(s)	134, 589
NdeI	CATATG	1 cut(s)	71
NdeII	GATC	4 cut(s)	100, 283, 496, 892
NgoMIV	GCCGGC	1 cut(s)	205
NlaIII	CATG	2 cut(s)	535, 805
NlaIV	GGNNCC	2 cut(s)	316, 852
NmeAIII	GCCGAG	2 cut(s)	298, 355
NmuCI	GTSAC	2 cut(s)	55, 674
NruI	TCGCGA	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	2 cut(s)	96, 918
PdiI	GCCGGC	1 cut(s)	207
PfeI	GAWTC	3 cut(s)	277, 820, 859
PkrI	GCNGC	6 cut(s)	249, 271, 340, 377, 668, 850
PleI	GAGTC	2 cut(s)	74, 143
PpsI	GAGTC	2 cut(s)	74, 143
PspN4I	GGNNCC	2 cut(s)	316, 852
PspPI	GGNCC	2 cut(s)	267, 340
RruI	TCGCGA	1 cut(s)	39
RsaI	GTAC	2 cut(s)	192, 316
RsaNI	GTAC	2 cut(s)	191, 315
SacII	CCGCGG	1 cut(s)	376
SaqAI	TTAA	2 cut(s)	138, 546
SatI	GCNGC	6 cut(s)	248, 270, 339, 376, 667, 849
Sau3AI	GATC	4 cut(s)	100, 283, 496, 892
Sau96I	GGNCC	2 cut(s)	267, 340
SchI	GAGTC	2 cut(s)	74, 143
ScrFI	CCNGG	2 cut(s)	134, 589
SfaNI	GCATC	1 cut(s)	249
Sfr303I	CCGCGG	1 cut(s)	376
SgrBI	CCGCGG	1 cut(s)	376
Sse9I	AATT	5 cut(s)	25, 164, 394, 526, 576
StyD4I	CCNGG	2 cut(s)	132, 587
StyI	CCWWGG	3 cut(s)	387, 552, 883
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	1 cut(s)	434
TaqI	TCGA	5 cut(s)	99, 117, 301, 536, 906
TasI	AATT	5 cut(s)	25, 164, 394, 526, 576
TatI	WGTACW	1 cut(s)	190
TauI	GCSGC	5 cut(s)	272, 341, 378, 669, 851
TfiI	GAWTC	3 cut(s)	277, 820, 859
Tru1I	TTAA	2 cut(s)	138, 546
Tru9I	TTAA	2 cut(s)	138, 546
TseFI	GTSAC	2 cut(s)	55, 674
TseI	GCWGC	1 cut(s)	247
Tsp45I	GTSAC	2 cut(s)	55, 674
TspDTI	ATGAA	2 cut(s)	19, 821
TspGWI	ACGGA	4 cut(s)	243, 739, 813, 922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.