Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0011065

Physical Location & Seq

Genomic Coordinates Reverse (-)

29269754 .. 29270784

Gene Structure 1031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g26820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTGCGGTGGTGCTATAATCGCTAAGTTCATCCCTCGCGACAGTCGCCGTCGTGTCACCGCCTCTGACATATGGCCGGACTCTCCCTTCGCCAAGTTCGATCCCGACACTTTCTTCGACTGCAATCCCACCCCAGTTAATCGCACCGACTCAATTCCGCGTAAATTACCCCAACCCATTTCAGGTGATGTGCAAGAAGAGAAGCCAGCTAAGAGGCAGAGGAAGAACCTGTACCGAGGCATCAGGCAGCGCCCGTGGGGCAAATGGGCCGCCGAGATTCGTGATCCCAGAAAAGGGGTTCGAGTTTGGCTCGGTACCTTCAACACCGCCGAGGAGGCGGCCCGAGCTCACGACAGGGAGGCTCGCAAAATCCGCGGCAAAAAAGCCAAGGTCAATTTCCCCAACGAAGACGACCACCTCCCCGCCAAGACGTATCTGAGAAACCCAAATCCTAATCCGTATCAACCCAAAAGCTTTGATTTGGGATTTGGGTATGATCTGAACCAGATTGCGACATTTCCCTCCAATTCCATGTCGATTGAGTTTAACTCCATGGCTAATGTGAACACCGACCCAATTGTTGTTTCCGGGGAAGAAAACTCTGTGTCTGGTTCAGATGGCGCTTTCTCCTCAACGGGCTTTCTGGGTTGCAATCAGATCGGGAGCGGCGGTTGTCACGGCCGAGCTGAGCTGACAGAAGTGGAGGAAACTCAAGAAGGGAAACGCAGCTTGGAGCCGATTGCAAGAATGGAAAAGGACGAAGTGCAGAAGCTTTCCGAGGAGCTAATGGCGTATGAGAGCATGATGAAGTTCTATCAGATTCCGTATCTGGATGGGCAGTCCACGGCGGCTCCTCAGAATCCTCCGCCTCAGGAGAGCGCCCTTGGTGATGATCTCTGGAGCTTCGATGACGACGATGACGTTCCTGCTTCCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0034059 GO:0036293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0070482 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

313

Amino Acids

34.89

Weight (kDa)

5.25

Isoelectric Point (pI)

48.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	78 - 126	1.1e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47520
fragaria_vesca	FvH4_2g26080 FvH4_2g26080 FvH4_2g26080
malus_domestica	MD11G1306500.v1.1
prunus_persica	Prupe.8G264900_v2.0.a1
pyrus_communis	pycom03g23120 pycom11g26820
rosa_chinensis	RchiOBHm_Chr6g0294441
rosa_laevigata	RLG00000011869
rosa_multiflora	Rmu_co8464789.1_g000002 Rmu_ssc0000248.1_g000011 Rmu_ssc0000248.1_g000012
rosa_roxburghii	Rroxscaffold_7G00173330
rosa_rugosa	Rorug06G0244700
rosa_samantha	Rh6AG357200 Rh6BG364100 Rh6CG371200 Rh6DG358000
rosa_wichuraiana	Rw6G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	314
AccBSI	CCGCTC	1 cut(s)	666
AccII	CGCG	3 cut(s)	39, 160, 375
AclWI	GGATC	2 cut(s)	95, 278
AcoI	YGGCCR	2 cut(s)	74, 679
AfaI	GTAC	2 cut(s)	233, 316
AfiI	CCNNNNNNNGG	3 cut(s)	182, 293, 294
AgsI	TTSAA	1 cut(s)	322
AjuI	GAANNNNNNNTTGG	6 cut(s)	380, 412, 568, 600, 713, 745
AluBI	AGCT	9 cut(s)	209, 347, 474, 686, 691, 729, 772, 784, 903
AluI	AGCT	9 cut(s)	209, 347, 474, 686, 691, 729, 772, 784, 903
Alw21I	GWGCWC	1 cut(s)	349
AlwI	GGATC	2 cut(s)	95, 278
Ama87I	CYCGRG	1 cut(s)	342
AoxI	GGCC	4 cut(s)	74, 267, 339, 679
ApeKI	GCWGC	2 cut(s)	247, 726
ArsI	GACNNNNNNTTYG	4 cut(s)	71, 98, 103, 130
Asp718I	GGTACC	1 cut(s)	314
AspLEI	GCGC	3 cut(s)	252, 623, 881
AspS9I	GGNCC	2 cut(s)	267, 340
AsuC2I	CCSGG	1 cut(s)	589
AsuHPI	GGTGA	3 cut(s)	49, 197, 899
AvaI	CYCGRG	1 cut(s)	342
AxyI	CCTNAGG	1 cut(s)	870
BanI	GGYRCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	349
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	2 cut(s)	259, 738
BccI	CCATC	2 cut(s)	611, 827
BceAI	ACGGC	3 cut(s)	33, 694, 861
BcgI	CGANNNNNNTGC	2 cut(s)	640, 674
BcnI	CCSGG	1 cut(s)	589
BfoI	RGCGCY	3 cut(s)	253, 624, 882
BglI	GCCNNNNNGGC	2 cut(s)	258, 335
BisI	GCNGC	7 cut(s)	248, 270, 339, 376, 667, 727, 849
BlpI	GCTNAGC	1 cut(s)	687
BlsI	GCNGC	7 cut(s)	249, 271, 340, 377, 668, 728, 850
Bme1390I	CCNGG	1 cut(s)	589
BmeT110I	CYCGRG	1 cut(s)	342
BmgT120I	GGNCC	2 cut(s)	267, 340
BmiI	GGNNCC	3 cut(s)	316, 735, 852
BmrFI	CCNGG	1 cut(s)	589
BmrI	ACTGGG	1 cut(s)	128
BmsI	GCATC	1 cut(s)	249
BmuI	ACTGGG	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	414
BplI	GAGNNNNNCTC	4 cut(s)	294, 326, 533, 565
BpmI	CTGGAG	1 cut(s)	919
Bpu1102I	GCTNAGC	1 cut(s)	687
BpuEI	CTTGAG	1 cut(s)	696
BpuMI	CCSGG	1 cut(s)	589
BsaXI	ACNNNNNCTCC	4 cut(s)	655, 685, 835, 865
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 293, 294
Bse1I	ACTGG	1 cut(s)	134
Bse21I	CCTNAGG	1 cut(s)	870
BseGI	GGATG	2 cut(s)	30, 838
BseLI	CCNNNNNNNGG	3 cut(s)	182, 293, 294
BseMII	CTCAG	4 cut(s)	428, 678, 869, 884
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	4 cut(s)	347, 619, 794, 843
BseX3I	CGGCCG	1 cut(s)	679
BseXI	GCAGC	2 cut(s)	259, 738
BsgI	GTGCAG	1 cut(s)	785
Bsh1236I	CGCG	3 cut(s)	39, 160, 375
Bsh1285I	CGRYCG	1 cut(s)	682
BshFI	GGCC	4 cut(s)	76, 269, 341, 681
BshNI	GGYRCC	1 cut(s)	314
BsiEI	CGRYCG	1 cut(s)	682
BsiHKAI	GWGCWC	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	77, 588
BslI	CCNNNNNNNGG	3 cut(s)	182, 293, 294
BsnI	GGCC	4 cut(s)	76, 269, 341, 681
BsoBI	CYCGRG	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	5 cut(s)	100, 283, 496, 657, 892
Bsp1720I	GCTNAGC	1 cut(s)	687
Bsp19I	CCATGG	1 cut(s)	552
Bsp68I	TCGCGA	1 cut(s)	39
BspANI	GGCC	4 cut(s)	76, 269, 341, 681
BspCNI	CTCAG	4 cut(s)	429, 679, 868, 883
BspFNI	CGCG	3 cut(s)	39, 160, 375
BspLI	GGNNCC	3 cut(s)	316, 735, 852
BspPI	GGATC	2 cut(s)	95, 278
BspT107I	GGYRCC	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	666
BsrI	ACTGG	1 cut(s)	134
BssMI	GATC	5 cut(s)	100, 283, 496, 657, 892
BssT1I	CCWWGG	3 cut(s)	387, 552, 883
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	207, 364
BstDEI	CTNAG	6 cut(s)	24, 210, 437, 687, 855, 870
BstDSI	CCRYGG	4 cut(s)	254, 373, 552, 843
BstF5I	GGATG	2 cut(s)	30, 838
BstFNI	CGCG	3 cut(s)	39, 160, 375
BstH2I	RGCGCY	3 cut(s)	253, 624, 882
BstHHI	GCGC	3 cut(s)	252, 623, 881
BstKTI	GATC	5 cut(s)	103, 286, 499, 660, 895
BstMBI	GATC	5 cut(s)	100, 283, 496, 657, 892
BstMCI	CGRYCG	1 cut(s)	682
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 45, 258, 335, 344, 372
BstSCI	CCNGG	1 cut(s)	587
BstUI	CGCG	3 cut(s)	39, 160, 375
BstV1I	GCAGC	2 cut(s)	259, 738
BstV2I	GAAGAC	1 cut(s)	414
BstZI	CGGCCG	1 cut(s)	679
Bsu36I	CCTNAGG	1 cut(s)	870
BsuRI	GGCC	4 cut(s)	76, 269, 341, 681
BtgI	CCRYGG	4 cut(s)	254, 373, 552, 843
BtsCI	GGATG	2 cut(s)	30, 838
BtuMI	TCGCGA	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	207, 364
CfoI	GCGC	3 cut(s)	252, 623, 881
Cfr13I	GGNCC	2 cut(s)	267, 340
Cfr42I	CCGCGG	1 cut(s)	376
Csp6I	GTAC	2 cut(s)	232, 315
CviAII	CATG	3 cut(s)	532, 553, 802
CviQI	GTAC	2 cut(s)	232, 315
DdeI	CTNAG	6 cut(s)	24, 210, 437, 687, 855, 870
DpnI	GATC	5 cut(s)	102, 285, 498, 659, 894
DpnII	GATC	5 cut(s)	100, 283, 496, 657, 892
EaeI	YGGCCR	2 cut(s)	74, 679
EagI	CGGCCG	1 cut(s)	679
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
EciI	GGCGGA	1 cut(s)	855
Ecl136II	GAGCTC	1 cut(s)	347
EclXI	CGGCCG	1 cut(s)	679
Eco130I	CCWWGG	3 cut(s)	387, 552, 883
Eco24I	GRGCYC	1 cut(s)	349
Eco52I	CGGCCG	1 cut(s)	679
Eco53kI	GAGCTC	1 cut(s)	347
Eco81I	CCTNAGG	1 cut(s)	870
Eco88I	CYCGRG	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	347
EcoT14I	CCWWGG	3 cut(s)	387, 552, 883
EcoT38I	GRGCYC	1 cut(s)	349
ErhI	CCWWGG	3 cut(s)	387, 552, 883
FaeI	CATG	3 cut(s)	535, 556, 805
FaiI	YATR	8 cut(s)	17, 71, 73, 495, 533, 554, 795, 803
FatI	CATG	3 cut(s)	531, 552, 801
FauI	CCCGC	1 cut(s)	430
FauNDI	CATATG	1 cut(s)	71
Fnu4HI	GCNGC	7 cut(s)	248, 270, 339, 376, 667, 727, 849
FokI	GGATG	2 cut(s)	17, 845
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	7 cut(s)	248, 270, 339, 376, 667, 727, 849
GlaI	GCGC	3 cut(s)	251, 622, 880
GluI	GCNGC	7 cut(s)	248, 270, 339, 376, 667, 727, 849
GsuI	CTGGAG	1 cut(s)	919
HaeII	RGCGCY	3 cut(s)	253, 624, 882
HaeIII	GGCC	4 cut(s)	76, 269, 341, 681
HapII	CCGG	2 cut(s)	77, 588
HhaI	GCGC	3 cut(s)	252, 623, 881
Hin1II	CATG	3 cut(s)	535, 556, 805
Hin6I	GCGC	3 cut(s)	250, 621, 879
HinP1I	GCGC	3 cut(s)	250, 621, 879
HindIII	AAGCTT	2 cut(s)	472, 770
HinfI	GANTC	5 cut(s)	80, 149, 277, 820, 859
HpaII	CCGG	2 cut(s)	77, 588
HphI	GGTGA	3 cut(s)	49, 197, 899
Hpy166II	GTNNAC	2 cut(s)	565, 843
Hpy188I	TCNGA	8 cut(s)	67, 438, 501, 616, 657, 778, 819, 858
Hpy188III	TCNNGA	9 cut(s)	38, 104, 281, 350, 661, 713, 830, 872, 898
Hpy8I	GTNNAC	2 cut(s)	565, 843
Hpy99I	CGWCG	2 cut(s)	54, 917
HpyAV	CCTTC	3 cut(s)	97, 328, 710
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	2 cut(s)	431, 921
HpyCH4V	TGCA	5 cut(s)	123, 193, 651, 743, 766
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 45, 258, 335, 344, 372
HpyF3I	CTNAG	6 cut(s)	24, 210, 437, 687, 855, 870
HpySE526I	ACGT	2 cut(s)	431, 921
Hsp92II	CATG	3 cut(s)	535, 556, 805
HspAI	GCGC	3 cut(s)	250, 621, 879
KpnI	GGTACC	1 cut(s)	318
KspI	CCGCGG	1 cut(s)	376
Kzo9I	GATC	5 cut(s)	100, 283, 496, 657, 892
LmnI	GCTCC	5 cut(s)	663, 733, 781, 856, 900
Lsp1109I	GCAGC	2 cut(s)	259, 738
LweI	GCATC	1 cut(s)	249
MaeII	ACGT	2 cut(s)	431, 921
MaeIII	GTNAC	2 cut(s)	55, 674
MalI	GATC	5 cut(s)	102, 285, 498, 659, 894
MbiI	CCGCTC	1 cut(s)	666
MboI	GATC	5 cut(s)	100, 283, 496, 657, 892
MboII	GAAGA	5 cut(s)	106, 209, 235, 419, 605
MfeI	CAATTG	1 cut(s)	576
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	5 cut(s)	153, 164, 394, 526, 576
MlyI	GAGTC	2 cut(s)	74, 143
MseI	TTAA	2 cut(s)	138, 546
MspA1I	CMGCKG	1 cut(s)	375
MspI	CCGG	2 cut(s)	77, 588
MspR9I	CCNGG	1 cut(s)	589
MunI	CAATTG	1 cut(s)	576
MvnI	CGCG	3 cut(s)	39, 160, 375
MwoI	GCNNNNNNNGC	6 cut(s)	20, 45, 258, 335, 344, 372
NciI	CCSGG	1 cut(s)	589
NcoI	CCATGG	1 cut(s)	552
NdeI	CATATG	1 cut(s)	71
NdeII	GATC	5 cut(s)	100, 283, 496, 657, 892
NlaIII	CATG	3 cut(s)	535, 556, 805
NlaIV	GGNNCC	3 cut(s)	316, 735, 852
NmeAIII	GCCGAG	3 cut(s)	298, 355, 707
NmuCI	GTSAC	2 cut(s)	55, 674
NruI	TCGCGA	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	3 cut(s)	96, 912, 918
PfeI	GAWTC	3 cut(s)	277, 820, 859
PkrI	GCNGC	7 cut(s)	249, 271, 340, 377, 668, 728, 850
PleI	GAGTC	2 cut(s)	74, 143
PpsI	GAGTC	2 cut(s)	74, 143
Psp124BI	GAGCTC	1 cut(s)	349
PspN4I	GGNNCC	3 cut(s)	316, 735, 852
PspPI	GGNCC	2 cut(s)	267, 340
RruI	TCGCGA	1 cut(s)	39
RsaI	GTAC	2 cut(s)	233, 316
RsaNI	GTAC	2 cut(s)	232, 315
SacI	GAGCTC	1 cut(s)	349
SacII	CCGCGG	1 cut(s)	376
SaqAI	TTAA	2 cut(s)	138, 546
SatI	GCNGC	7 cut(s)	248, 270, 339, 376, 667, 727, 849
Sau3AI	GATC	5 cut(s)	100, 283, 496, 657, 892
Sau96I	GGNCC	2 cut(s)	267, 340
SchI	GAGTC	2 cut(s)	74, 143
ScrFI	CCNGG	1 cut(s)	589
SduI	GDGCHC	1 cut(s)	349
SfaNI	GCATC	1 cut(s)	249
Sfr303I	CCGCGG	1 cut(s)	376
SgrBI	CCGCGG	1 cut(s)	376
SmlI	CTYRAG	1 cut(s)	711
SmoI	CTYRAG	1 cut(s)	711
Sse9I	AATT	5 cut(s)	153, 164, 394, 526, 576
SstI	GAGCTC	1 cut(s)	349
StyD4I	CCNGG	1 cut(s)	587
StyI	CCWWGG	3 cut(s)	387, 552, 883
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	2 cut(s)	434, 924
TaqI	TCGA	5 cut(s)	99, 117, 301, 536, 906
TasI	AATT	5 cut(s)	153, 164, 394, 526, 576
TauI	GCSGC	5 cut(s)	272, 341, 378, 669, 851
TfiI	GAWTC	3 cut(s)	277, 820, 859
Tru1I	TTAA	2 cut(s)	138, 546
Tru9I	TTAA	2 cut(s)	138, 546
TseFI	GTSAC	2 cut(s)	55, 674
TseI	GCWGC	2 cut(s)	247, 726
Tsp45I	GTSAC	2 cut(s)	55, 674
TspDTI	ATGAA	2 cut(s)	19, 821
TspGWI	ACGGA	2 cut(s)	447, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.