Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011065

Physical Location & Seq

Genomic Coordinates Forward (+)

22209138 .. 22210958

Gene Structure 1821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G264900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGTGTGGCGGTGCTATTCTCTCTAATCTCATCCCTCGCAACCGTGGCCTTCGTGTCACCGCCTCCGACATATGGCCCAATTCTCCCTTCGCTAAGCTCAATCCCGACAATTTCTTCGACTACAATCCCAGCCCACTCACTCGTACCGACTCATCCCCACGCAAAAGAGCCCAACCCACTTCAGGTAACCGGCAAGAAGAGAAGCCCCCCAAGAGGGCGAGGAAGAACCTCTACCGAGGCATCAGGCAGCGTCCGTGGGGCAAATGGGCCGCGGAGATTCGTGATCCCAGAAAAGGGGTTCGAGTTTGGCTTGGTACCTTCAACACCCCTGAAGAGGCAGCCAGAGCTTACGATAGGGAGGCTCGCAAAATCCGCGGTAAGAAAGCCAAGGTCAATTTCCCCAACGAAGACGACGACATTCCCACCCAAACGTATCTGAGAAACCCCAATCCTCCTTCTCTGTTTCAAACCAGTAGCGAGAATTTGAGTAATAGTCATATGCCAAAAAGCTTTGATTTGGGATTTGGGTATGATCTAAACCAGATTGCAACAATTTCCTCCAATTCCAATTCCAAGGGGTTGAGCTCCATGAATCTTGTGAACACTGACCCAACTGTTATTTCGGGGGAAGAAAACTCCGGGTCTGGTTCAGATGGCGCTTACTCTTCGACGGCGGGGCTACTGGGTTGCAATCAGAATGGGAGCAGCTGTTGTTATGGTGAAGCTGAGGTGAAAGAGCTAGAGGAAACGAAAGAAGGGATATTGAATAAGGATGCGATTGCAATCATGGAAGAGAACGAAGTGCAAAAGCTTTCTGAGGAGCTAATGGCGTACGAGAACATGATGAAATTCTATCAGATTCCCTATCTGGACGGGCAGTCCACAGCTACCCAGCATCCTCCAGCTCAGGAAGGCATGGTTGGTGATCTCTGGAGCTTCGATGACGACCGCGTTTCTGCTCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0034059 GO:0036293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0070482 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

322

Amino Acids

35.68

Weight (kDa)

5.68

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47520
fragaria_vesca	FvH4_2g26080 FvH4_2g26080 FvH4_2g26080
malus_domestica	MD11G1306500.v1.1
prunus_persica	Prupe.8G264900_v2.0.a1
pyrus_communis	pycom03g23120 pycom11g26820
rosa_chinensis	RchiOBHm_Chr6g0294441
rosa_laevigata	RLG00000011869
rosa_multiflora	Rmu_co8464789.1_g000002 Rmu_ssc0000248.1_g000011 Rmu_ssc0000248.1_g000012
rosa_roxburghii	Rroxscaffold_7G00173330
rosa_rugosa	Rorug06G0244700
rosa_samantha	Rh6AG357200 Rh6BG364100 Rh6CG371200 Rh6DG358000
rosa_wichuraiana	Rw6G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	314
AccII	CGCG	3 cut(s)	272, 375, 951
AciI	CCGC	8 cut(s)	9, 60, 270, 272, 373, 375, 674, 949
AclWI	GGATC	1 cut(s)	278
AcsI	RAATTY	2 cut(s)	481, 848
AcuI	CTGAAG	2 cut(s)	165, 351
AfaI	GTAC	3 cut(s)	145, 316, 833
AfiI	CCNNNNNNNGG	7 cut(s)	72, 182, 213, 214, 293, 294, 334
AgsI	TTSAA	3 cut(s)	322, 467, 766
AhdI	GACNNNNNGTC	1 cut(s)	877
AjuI	GAANNNNNNNTTGG	8 cut(s)	71, 103, 380, 412, 604, 636, 903, 935
Alw21I	GWGCWC	1 cut(s)	587
AlwI	GGATC	1 cut(s)	278
AoxI	GGCC	3 cut(s)	46, 74, 267
ApeKI	GCWGC	3 cut(s)	247, 338, 705
ApoI	RAATTY	2 cut(s)	481, 848
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
Asp718I	GGTACC	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	659
AspS9I	GGNCC	2 cut(s)	75, 267
AsuC2I	CCSGG	1 cut(s)	640
AsuHPI	GGTGA	4 cut(s)	49, 731, 742, 935
BanI	GGYRCC	1 cut(s)	314
BanII	GRGCYC	2 cut(s)	172, 587
BarI	GAAGNNNNNNTAC	2 cut(s)	215, 247
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	587
BbvCI	CCTCAGC	1 cut(s)	726
BbvI	GCAGC	3 cut(s)	259, 350, 717
BccI	CCATC	1 cut(s)	647
BceAI	ACGGC	1 cut(s)	687
BcnI	CCSGG	1 cut(s)	640
BfaI	CTAG	1 cut(s)	740
BfoI	RGCGCY	1 cut(s)	660
BisI	GCNGC	4 cut(s)	248, 270, 339, 706
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	4 cut(s)	249, 271, 340, 707
Bme1390I	CCNGG	1 cut(s)	640
BmeRI	GACNNNNNGTC	1 cut(s)	877
BmgT120I	GGNCC	2 cut(s)	75, 267
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	640
BmrI	ACTGGG	1 cut(s)	692
BmsI	GCATC	3 cut(s)	249, 763, 904
BmuI	ACTGGG	1 cut(s)	692
BpiI	GAAGAC	1 cut(s)	414
BpmI	CTGGAG	2 cut(s)	885, 952
Bpu10I	CCTNAGC	2 cut(s)	726, 906
Bpu1102I	GCTNAGC	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	640
BsaBI	GATNNNNATC	1 cut(s)	782
BsaJI	CCNNGG	7 cut(s)	43, 235, 254, 270, 373, 387, 573
BsaXI	ACNNNNNCTCC	2 cut(s)	694, 724
Bsc4I	CCNNNNNNNGG	7 cut(s)	72, 182, 213, 214, 293, 294, 334
Bse118I	RCCGGY	1 cut(s)	189
Bse1I	ACTGG	2 cut(s)	471, 687
Bse8I	GATNNNNATC	1 cut(s)	782
BseDI	CCNNGG	7 cut(s)	43, 235, 254, 270, 373, 387, 573
BseGI	GGATG	4 cut(s)	30, 152, 778, 895
BseJI	GATNNNNATC	1 cut(s)	782
BseLI	CCNNNNNNNGG	7 cut(s)	72, 182, 213, 214, 293, 294, 334
BseMII	CTCAG	4 cut(s)	428, 717, 807, 920
BseNI	ACTGG	2 cut(s)	471, 687
BseRI	GAGGAG	1 cut(s)	833
BseXI	GCAGC	3 cut(s)	259, 350, 717
BseYI	CCCAGC	2 cut(s)	128, 891
Bsh1236I	CGCG	3 cut(s)	272, 375, 951
Bsh1285I	CGRYCG	1 cut(s)	949
BshFI	GGCC	3 cut(s)	48, 76, 269
BshNI	GGYRCC	1 cut(s)	314
BsiEI	CGRYCG	1 cut(s)	949
BsiHKAI	GWGCWC	1 cut(s)	587
BsiSI	CCGG	2 cut(s)	190, 639
BsiWI	CGTACG	1 cut(s)	831
BslI	CCNNNNNNNGG	7 cut(s)	72, 182, 213, 214, 293, 294, 334
BsnI	GGCC	3 cut(s)	48, 76, 269
Bsp1286I	GDGCHC	2 cut(s)	172, 587
Bsp143I	GATC	3 cut(s)	283, 532, 925
Bsp1720I	GCTNAGC	1 cut(s)	93
BspACI	CCGC	8 cut(s)	9, 60, 270, 272, 373, 375, 674, 949
BspANI	GGCC	3 cut(s)	48, 76, 269
BspCNI	CTCAG	4 cut(s)	429, 718, 808, 919
BspFNI	CGCG	3 cut(s)	272, 375, 951
BspLI	GGNNCC	1 cut(s)	316
BspPI	GGATC	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	314
BsrFI	RCCGGY	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	471, 687
BssAI	RCCGGY	1 cut(s)	189
BssECI	CCNNGG	7 cut(s)	43, 235, 254, 270, 373, 387, 573
BssMI	GATC	3 cut(s)	283, 532, 925
BssT1I	CCWWGG	2 cut(s)	387, 573
Bst4CI	ACNGT	2 cut(s)	44, 616
Bst6I	CTCTTC	4 cut(s)	192, 327, 670, 786
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	5 cut(s)	93, 437, 726, 816, 906
BstDSI	CCRYGG	4 cut(s)	43, 254, 270, 373
BstEII	GGTNACC	1 cut(s)	185
BstF5I	GGATG	4 cut(s)	30, 152, 778, 895
BstFNI	CGCG	3 cut(s)	272, 375, 951
BstH2I	RGCGCY	1 cut(s)	660
BstHHI	GCGC	1 cut(s)	659
BstKTI	GATC	3 cut(s)	286, 535, 928
BstMBI	GATC	3 cut(s)	283, 532, 925
BstMCI	CGRYCG	1 cut(s)	949
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 344, 372
BstPI	GGTNACC	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	638
BstUI	CGCG	3 cut(s)	272, 375, 951
BstV1I	GCAGC	3 cut(s)	259, 350, 717
BstV2I	GAAGAC	1 cut(s)	414
BsuRI	GGCC	3 cut(s)	48, 76, 269
BtgI	CCRYGG	4 cut(s)	43, 254, 270, 373
BtsCI	GGATG	4 cut(s)	30, 152, 778, 895
BtsIMutI	CAGTG	1 cut(s)	603
Cac8I	GCNNGC	1 cut(s)	364
CfoI	GCGC	1 cut(s)	659
Cfr10I	RCCGGY	1 cut(s)	189
Cfr13I	GGNCC	2 cut(s)	75, 267
Cfr42I	CCGCGG	2 cut(s)	273, 376
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	3 cut(s)	144, 315, 832
CviAII	CATG	4 cut(s)	589, 787, 841, 916
CviQI	GTAC	3 cut(s)	144, 315, 832
DdeI	CTNAG	5 cut(s)	93, 437, 726, 816, 906
DpnI	GATC	3 cut(s)	285, 534, 927
DpnII	GATC	3 cut(s)	283, 532, 925
DriI	GACNNNNNGTC	1 cut(s)	877
Eam1104I	CTCTTC	4 cut(s)	192, 327, 670, 786
Eam1105I	GACNNNNNGTC	1 cut(s)	877
EarI	CTCTTC	4 cut(s)	192, 327, 670, 786
Ecl136II	GAGCTC	1 cut(s)	585
Eco130I	CCWWGG	2 cut(s)	387, 573
Eco24I	GRGCYC	2 cut(s)	172, 587
Eco53kI	GAGCTC	1 cut(s)	585
Eco57I	CTGAAG	2 cut(s)	165, 351
Eco91I	GGTNACC	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	585
EcoO65I	GGTNACC	1 cut(s)	185
EcoT14I	CCWWGG	2 cut(s)	387, 573
EcoT38I	GRGCYC	2 cut(s)	172, 587
ErhI	CCWWGG	2 cut(s)	387, 573
FaeI	CATG	4 cut(s)	592, 790, 844, 919
FatI	CATG	4 cut(s)	588, 786, 840, 915
FauI	CCCGC	1 cut(s)	667
FauNDI	CATATG	2 cut(s)	71, 498
Fnu4HI	GCNGC	4 cut(s)	248, 270, 339, 706
FokI	GGATG	4 cut(s)	17, 139, 785, 882
FriOI	GRGCYC	2 cut(s)	172, 587
Fsp4HI	GCNGC	4 cut(s)	248, 270, 339, 706
FspBI	CTAG	1 cut(s)	740
GlaI	GCGC	1 cut(s)	658
GluI	GCNGC	4 cut(s)	248, 270, 339, 706
GsaI	CCCAGC	2 cut(s)	132, 895
GsuI	CTGGAG	2 cut(s)	885, 952
HaeII	RGCGCY	1 cut(s)	660
HaeIII	GGCC	3 cut(s)	48, 76, 269
HapII	CCGG	2 cut(s)	190, 639
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	659
Hin1II	CATG	4 cut(s)	592, 790, 844, 919
Hin6I	GCGC	1 cut(s)	657
HinP1I	GCGC	1 cut(s)	657
HindIII	AAGCTT	2 cut(s)	508, 809
HinfI	GANTC	4 cut(s)	149, 277, 592, 859
HpaII	CCGG	2 cut(s)	190, 639
HphI	GGTGA	4 cut(s)	49, 731, 742, 935
Hpy166II	GTNNAC	2 cut(s)	601, 882
Hpy188I	TCNGA	6 cut(s)	67, 438, 652, 696, 817, 858
Hpy188III	TCNNGA	5 cut(s)	104, 281, 869, 908, 931
Hpy8I	GTNNAC	2 cut(s)	601, 882
Hpy99I	CGWCG	2 cut(s)	416, 673
HpyAV	CCTTC	6 cut(s)	59, 97, 328, 465, 749, 905
HpyCH4III	ACNGT	2 cut(s)	44, 616
HpyCH4IV	ACGT	1 cut(s)	431
HpyCH4V	TGCA	4 cut(s)	548, 690, 782, 805
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 344, 372
HpyF3I	CTNAG	5 cut(s)	93, 437, 726, 816, 906
HpySE526I	ACGT	1 cut(s)	431
Hsp92II	CATG	4 cut(s)	592, 790, 844, 919
HspAI	GCGC	1 cut(s)	657
KpnI	GGTACC	1 cut(s)	318
KspI	CCGCGG	2 cut(s)	273, 376
Kzo9I	GATC	3 cut(s)	283, 532, 925
LmnI	GCTCC	5 cut(s)	590, 702, 820, 933, 964
Lsp1109I	GCAGC	3 cut(s)	259, 350, 717
LweI	GCATC	3 cut(s)	249, 763, 904
MaeI	CTAG	1 cut(s)	740
MaeII	ACGT	1 cut(s)	431
MaeIII	GTNAC	2 cut(s)	55, 185
MalI	GATC	3 cut(s)	285, 534, 927
MboI	GATC	3 cut(s)	283, 532, 925
MboII	GAAGA	8 cut(s)	106, 209, 235, 344, 419, 641, 657, 803
MhlI	GDGCHC	2 cut(s)	172, 587
MluCI	AATT	8 cut(s)	79, 109, 394, 481, 552, 562, 568, 848
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	90
MspA1I	CMGCKG	3 cut(s)	272, 375, 708
MspI	CCGG	2 cut(s)	190, 639
MspR9I	CCNGG	1 cut(s)	640
MvnI	CGCG	3 cut(s)	272, 375, 951
MwoI	GCNNNNNNNGC	3 cut(s)	45, 344, 372
NciI	CCSGG	1 cut(s)	640
NdeI	CATATG	2 cut(s)	71, 498
NdeII	GATC	3 cut(s)	283, 532, 925
NlaIII	CATG	4 cut(s)	592, 790, 844, 919
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PfeI	GAWTC	3 cut(s)	277, 592, 859
Pfl23II	CGTACG	1 cut(s)	831
PkrI	GCNGC	4 cut(s)	249, 271, 340, 707
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Psp124BI	GAGCTC	1 cut(s)	587
PspEI	GGTNACC	1 cut(s)	185
PspFI	CCCAGC	2 cut(s)	128, 891
PspLI	CGTACG	1 cut(s)	831
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	2 cut(s)	75, 267
PvuII	CAGCTG	1 cut(s)	708
RsaI	GTAC	3 cut(s)	145, 316, 833
RsaNI	GTAC	3 cut(s)	144, 315, 832
SacI	GAGCTC	1 cut(s)	587
SacII	CCGCGG	2 cut(s)	273, 376
SatI	GCNGC	4 cut(s)	248, 270, 339, 706
Sau3AI	GATC	3 cut(s)	283, 532, 925
Sau96I	GGNCC	2 cut(s)	75, 267
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	640
SduI	GDGCHC	2 cut(s)	172, 587
SfaNI	GCATC	3 cut(s)	249, 763, 904
Sfr303I	CCGCGG	2 cut(s)	273, 376
SgrBI	CCGCGG	2 cut(s)	273, 376
Sse9I	AATT	8 cut(s)	79, 109, 394, 481, 552, 562, 568, 848
SsiI	CCGC	8 cut(s)	9, 60, 270, 272, 373, 375, 674, 949
SspMI	CTAG	1 cut(s)	740
SstI	GAGCTC	1 cut(s)	587
StyD4I	CCNGG	1 cut(s)	638
StyI	CCWWGG	2 cut(s)	387, 573
TaaI	ACNGT	2 cut(s)	44, 616
TaiI	ACGT	1 cut(s)	434
TaqI	TCGA	4 cut(s)	117, 301, 668, 939
TasI	AATT	8 cut(s)	79, 109, 394, 481, 552, 562, 568, 848
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	3 cut(s)	277, 592, 859
TscAI	CASTG	1 cut(s)	610
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	247, 338, 705
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	605, 860
TspGWI	ACGGA	2 cut(s)	243, 951
TspRI	CASTG	1 cut(s)	610
XapI	RAATTY	2 cut(s)	481, 848
XspI	CTAG	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.