Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011065

Physical Location & Seq

Genomic Coordinates Forward (+)

20987724 .. 20989283

Gene Structure 1560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g26080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTGTGGCGGTGATAGAATCGCTGAGTTCATCCCTCGCAACCGCCGCCGTGTCTCCGCCGAGATATGGCCGGACAATTTCTTCAACTCAGATCTCACCACACCTTGTCACAAGGTCGACTCACCTTCCACCAAAACACCCCAACCCATTTCAGGGGGCGTGCAAGAACAGAAGCCCGCCAAGCGGCAGAGGAAGAACCTCTACAGAGGCATCAGGCAGCGCCCATGGGGCAAATGGGCCGCTGAGATTCGCGACCCGAGAAAAGGAGTCCGAGTTTGGCTTGGTACCTTCAACACGGCTGAAGAAGCAGCCAGAGCTTATGACAGGGAGGCTCGCAAAATCCGCGGCAAGAAAGCCAAGGTTAATTTCCCTAATGAAGATGACCAAGATTACAATCCTCATCAGACTCATCTGAGAGTTTCCAATTCCAACCCTGCTCATCATCCATGTCAGCTTAATAATACAGGGTTGGTGGGTTGCATTCACGATGAGAAAGAGAAAGAGGAATCAATACAAGGGAATACGATTGTGGCTGCTGAAGAGAATGAAGTTCAAAAGCTTTCTGAGGAGCTAATGGCGTATGAGAACTACATGAAATTCTATCAGATTCCATATCTGGATGGGCAGTCCATAGCCCCTGTGAATCCTACTGCTCAGGAAAGCATGGTTGATGATCTTTGGATCTTTGATGATGAGAACGAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0034059 GO:0036293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0070482 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

236

Amino Acids

27.04

Weight (kDa)

6.11

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	68 - 116	4.9e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47520
fragaria_vesca	FvH4_2g26080 FvH4_2g26080 FvH4_2g26080
malus_domestica	MD11G1306500.v1.1
prunus_persica	Prupe.8G264900_v2.0.a1
pyrus_communis	pycom03g23120 pycom11g26820
rosa_chinensis	RchiOBHm_Chr6g0294441
rosa_laevigata	RLG00000011869
rosa_multiflora	Rmu_co8464789.1_g000002 Rmu_ssc0000248.1_g000011 Rmu_ssc0000248.1_g000012
rosa_roxburghii	Rroxscaffold_7G00173330
rosa_rugosa	Rorug06G0244700
rosa_samantha	Rh6AG357200 Rh6BG364100 Rh6CG371200 Rh6DG358000
rosa_wichuraiana	Rw6G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	2 cut(s)	252, 345
AciI	CCGC	9 cut(s)	9, 43, 46, 57, 177, 184, 240, 343, 345
AclWI	GGATC	1 cut(s)	689
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	2 cut(s)	321, 558
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	5 cut(s)	66, 152, 153, 183, 263
AgsI	TTSAA	3 cut(s)	85, 292, 554
AjuI	GAANNNNNNNTTGG	2 cut(s)	350, 382
AluBI	AGCT	4 cut(s)	317, 454, 559, 571
AluI	AGCT	4 cut(s)	317, 454, 559, 571
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	689
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	2 cut(s)	68, 237
ApeKI	GCWGC	3 cut(s)	217, 308, 533
ApoI	RAATTY	1 cut(s)	596
Asp718I	GGTACC	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	237
AsuHPI	GGTGA	3 cut(s)	23, 88, 114
AvaI	CYCGRG	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	284
BarI	GAAGNNNNNNTAC	2 cut(s)	185, 217
BbvI	GCAGC	3 cut(s)	229, 320, 520
BccI	CCATC	1 cut(s)	614
BceAI	ACGGC	2 cut(s)	33, 312
BcoDI	GTCTC	1 cut(s)	58
BfmI	CTRYAG	1 cut(s)	202
BfoI	RGCGCY	1 cut(s)	223
BglI	GCCNNNNNGGC	1 cut(s)	228
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	7 cut(s)	46, 185, 218, 240, 309, 346, 534
BlsI	GCNGC	7 cut(s)	47, 186, 219, 241, 310, 347, 535
BmeT110I	CYCGRG	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	1 cut(s)	286
BmsI	GCATC	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	654
BsaBI	GATNNNNATC	1 cut(s)	393
BsaJI	CCNNGG	3 cut(s)	224, 343, 357
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 152, 153, 183, 263
Bse8I	GATNNNNATC	1 cut(s)	393
BseDI	CCNNGG	3 cut(s)	224, 343, 357
BseGI	GGATG	3 cut(s)	30, 442, 625
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	5 cut(s)	66, 152, 153, 183, 263
BseMII	CTCAG	6 cut(s)	15, 102, 234, 404, 555, 668
BseRI	GAGGAG	1 cut(s)	581
BseXI	GCAGC	3 cut(s)	229, 320, 520
Bsh1236I	CGCG	2 cut(s)	252, 345
BshFI	GGCC	2 cut(s)	70, 239
BshNI	GGYRCC	1 cut(s)	284
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	71
BslI	CCNNNNNNNGG	5 cut(s)	66, 152, 153, 183, 263
BsmAI	GTCTC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	480
BsnI	GGCC	2 cut(s)	70, 239
BsoBI	CYCGRG	1 cut(s)	256
Bsp143I	GATC	3 cut(s)	91, 673, 681
Bsp19I	CCATGG	1 cut(s)	224
Bsp68I	TCGCGA	1 cut(s)	252
BspACI	CCGC	9 cut(s)	9, 43, 46, 57, 177, 184, 240, 343, 345
BspANI	GGCC	2 cut(s)	70, 239
BspCNI	CTCAG	6 cut(s)	16, 101, 235, 405, 556, 667
BspFNI	CGCG	2 cut(s)	252, 345
BspLI	GGNNCC	1 cut(s)	286
BspPI	GGATC	1 cut(s)	689
BspT107I	GGYRCC	1 cut(s)	284
BssECI	CCNNGG	3 cut(s)	224, 343, 357
BssMI	GATC	3 cut(s)	91, 673, 681
BssT1I	CCWWGG	2 cut(s)	224, 357
Bst6I	CTCTTC	1 cut(s)	534
BstC8I	GCNNGC	3 cut(s)	161, 177, 334
BstDEI	CTNAG	6 cut(s)	24, 88, 243, 413, 564, 654
BstDSI	CCRYGG	2 cut(s)	224, 343
BstF5I	GGATG	3 cut(s)	30, 442, 625
BstFNI	CGCG	2 cut(s)	252, 345
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	3 cut(s)	94, 676, 684
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	3 cut(s)	91, 673, 681
BstMWI	GCNNNNNNNGC	6 cut(s)	45, 181, 228, 305, 314, 342
BstSFI	CTRYAG	1 cut(s)	202
BstUI	CGCG	2 cut(s)	252, 345
BstV1I	GCAGC	3 cut(s)	229, 320, 520
BstX2I	RGATCY	2 cut(s)	91, 681
BstYI	RGATCY	2 cut(s)	91, 681
BsuRI	GGCC	2 cut(s)	70, 239
BtgI	CCRYGG	2 cut(s)	224, 343
BtsCI	GGATG	3 cut(s)	30, 442, 625
BtuMI	TCGCGA	1 cut(s)	252
Cac8I	GCNNGC	3 cut(s)	161, 177, 334
CfoI	GCGC	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	237
Cfr42I	CCGCGG	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	285
CviAII	CATG	4 cut(s)	225, 447, 592, 664
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	6 cut(s)	24, 88, 243, 413, 564, 654
DpnI	GATC	3 cut(s)	93, 675, 683
DpnII	GATC	3 cut(s)	91, 673, 681
EaeI	YGGCCR	1 cut(s)	68
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	2 cut(s)	224, 357
Eco57I	CTGAAG	2 cut(s)	321, 558
Eco88I	CYCGRG	1 cut(s)	256
EcoT14I	CCWWGG	2 cut(s)	224, 357
ErhI	CCWWGG	2 cut(s)	224, 357
FaeI	CATG	4 cut(s)	228, 450, 595, 667
FaiI	YATR	9 cut(s)	67, 226, 321, 448, 582, 593, 613, 632, 665
FatI	CATG	4 cut(s)	224, 446, 591, 663
FauI	CCCGC	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	7 cut(s)	46, 185, 218, 240, 309, 346, 534
FokI	GGATG	3 cut(s)	17, 429, 632
Fsp4HI	GCNGC	7 cut(s)	46, 185, 218, 240, 309, 346, 534
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	7 cut(s)	46, 185, 218, 240, 309, 346, 534
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	2 cut(s)	70, 239
HapII	CCGG	1 cut(s)	71
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	4 cut(s)	228, 450, 595, 667
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	8 cut(s)	18, 119, 247, 267, 406, 506, 607, 643
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	3 cut(s)	23, 88, 114
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	6 cut(s)	91, 272, 405, 414, 565, 606
Hpy188III	TCNNGA	4 cut(s)	251, 485, 617, 656
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	2 cut(s)	135, 298
HpyCH4V	TGCA	2 cut(s)	163, 480
HpyF10VI	GCNNNNNNNGC	6 cut(s)	45, 181, 228, 305, 314, 342
HpyF3I	CTNAG	6 cut(s)	24, 88, 243, 413, 564, 654
Hsp92II	CATG	4 cut(s)	228, 450, 595, 667
HspAI	GCGC	1 cut(s)	220
KpnI	GGTACC	1 cut(s)	288
KspI	CCGCGG	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	91, 673, 681
LmnI	GCTCC	1 cut(s)	568
Lsp1109I	GCAGC	3 cut(s)	229, 320, 520
LweI	GCATC	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	3 cut(s)	93, 675, 683
MboI	GATC	3 cut(s)	91, 673, 681
MboII	GAAGA	5 cut(s)	73, 205, 314, 389, 551
MflI	RGATCY	2 cut(s)	91, 681
MluCI	AATT	5 cut(s)	76, 364, 424, 596, 703
MlyI	GAGTC	3 cut(s)	113, 276, 400
MmeI	TCCRAC	1 cut(s)	453
MnlI	CCTC	8 cut(s)	45, 183, 200, 209, 322, 408, 496, 559
MseI	TTAA	3 cut(s)	363, 456, 706
MspA1I	CMGCKG	2 cut(s)	242, 345
MspI	CCGG	1 cut(s)	71
Mva1269I	GAATGC	1 cut(s)	480
MvnI	CGCG	2 cut(s)	252, 345
MwoI	GCNNNNNNNGC	6 cut(s)	45, 181, 228, 305, 314, 342
NcoI	CCATGG	1 cut(s)	224
NdeII	GATC	3 cut(s)	91, 673, 681
NlaIII	CATG	4 cut(s)	228, 450, 595, 667
NlaIV	GGNNCC	1 cut(s)	286
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	107
NruI	TCGCGA	1 cut(s)	252
PctI	GAATGC	1 cut(s)	480
PfeI	GAWTC	5 cut(s)	18, 247, 506, 607, 643
PkrI	GCNGC	7 cut(s)	47, 186, 219, 241, 310, 347, 535
PleI	GAGTC	3 cut(s)	113, 275, 400
PpsI	GAGTC	3 cut(s)	113, 275, 400
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	237
PsuI	RGATCY	2 cut(s)	91, 681
RruI	TCGCGA	1 cut(s)	252
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
SacII	CCGCGG	1 cut(s)	346
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	3 cut(s)	363, 456, 706
SatI	GCNGC	7 cut(s)	46, 185, 218, 240, 309, 346, 534
Sau3AI	GATC	3 cut(s)	91, 673, 681
Sau96I	GGNCC	1 cut(s)	237
SchI	GAGTC	3 cut(s)	113, 276, 400
SfaNI	GCATC	1 cut(s)	219
SfcI	CTRYAG	1 cut(s)	202
Sfr303I	CCGCGG	1 cut(s)	346
SgrBI	CCGCGG	1 cut(s)	346
Sse9I	AATT	5 cut(s)	76, 364, 424, 596, 703
SsiI	CCGC	9 cut(s)	9, 43, 46, 57, 177, 184, 240, 343, 345
StyI	CCWWGG	2 cut(s)	224, 357
TaqI	TCGA	1 cut(s)	117
TasI	AATT	5 cut(s)	76, 364, 424, 596, 703
TauI	GCSGC	4 cut(s)	48, 187, 242, 348
TfiI	GAWTC	5 cut(s)	18, 247, 506, 607, 643
Tru1I	TTAA	3 cut(s)	363, 456, 706
Tru9I	TTAA	3 cut(s)	363, 456, 706
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	3 cut(s)	217, 308, 533
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	4 cut(s)	19, 390, 561, 608
XapI	RAATTY	1 cut(s)	596
XcmI	CCANNNNNNNNNTGG	1 cut(s)	231
XmiI	GTMKAC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.