Rh6BG364100

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011065
Physical Location & Seq
Forward (+)
59378637 .. 59380204
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG364100.1

Sequence Viewer

Length: 927 bp
ATGTGTGGCGGTGCTATAATCGCTGAATTCATCCCTCGCAACCGCAGCCGTGTCTCCGGCTCTGAGATATGGCCCAACTTGTCCTTCGCGAAGCTCAATCCCGACAATTTCTTCGAAAAGCACTCACCTCCGAGCAAAACATCCCAACCCTTTTCAGGGGGTCATGATCTGGAAGAACAGAAGCCCTCCAAGAGGCAGAGGAAGAACCTCTACAGAGGCATCAGGCAGCGCCCATGGGGCAAATGGGCCGCTGAGATTCGCGACCCCAGAAAAGGAGTCCGAGTCTGGCTCGGTACCTTCAACACCGCTGAAGAAGCAGCCAGAGCTTATGACAGGGAGGCTCGCAAAATCCGTGGCAAGAAAGCCAAGGTTAATTTTCCTAATGAAGATGACCAAGAGTACCACCCCCATCAGACTTATCTGAAAAATTCCAATCCTCATCCATTGCAACCCAATACGGGTAATTTCAATGACAATCATATCCCAAAAGGCTTTGATATGGGTTTTGGTTATGATCTGAACCAGAGTGCAGCATTTCCCTCAAATTCAAATGGTTCAAATGGTTTTAACTCGGTGGTAGTTAAGACTGACCCAATTGTTGTTTCTGGGGAAGAGAATTCTGGGTCTGGTTCAGAGGGGACTTACTCCTCTACAGGGTTTGTGGGTTGCAGTCACAATGGGAAAGAGAAGGAGGAATCAACACAAAGTAATGCGATTGTGGCCGCTGAGGAGAATGAAGTGCAGAAGCTTTCTGAGGAGCTACTGGCGTTTGAGAACTACATGAAGTTCTATCAGATTCCCTATCTGGATGGGCAGTCCACAGCCCCTGTAAATCCTGCTGCGCAGGAAAGCATGGTTGGCGATCTGTGGAGCTTTGATGATGAGCATGAGAATGTTCCTGCTTCTGTCACATCTTCCTTCGATTGA

Protein Analysis

308

Amino Acids

34.31

Weight (kDa)

5.7

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 71 - 119 7.6e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011065)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47520
fragaria_vesca FvH4_2g26080 FvH4_2g26080 FvH4_2g26080
malus_domestica MD11G1306500.v1.1
prunus_persica Prupe.8G264900_v2.0.a1
pyrus_communis pycom03g23120 pycom11g26820
rosa_chinensis RchiOBHm_Chr6g0294441
rosa_laevigata RLG00000011869
rosa_multiflora Rmu_co8464789.1_g000002 Rmu_ssc0000248.1_g000011 Rmu_ssc0000248.1_g000012
rosa_roxburghii Rroxscaffold_7G00173330
rosa_rugosa Rorug06G0244700
rosa_samantha Rh6AG357200 Rh6BG364100 Rh6CG371200 Rh6DG358000
rosa_wichuraiana Rw6G031140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 843
Acc65I GGTACC 1 cut(s) 293
AccB1I GGYRCC 1 cut(s) 293
AccII CGCG 2 cut(s) 89, 261
AciI CCGC 5 cut(s) 9, 43, 249, 306, 723
AcoI YGGCCR 1 cut(s) 720
AcsI RAATTY 4 cut(s) 26, 427, 544, 616
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 2 cut(s) 295, 401
AfiI CCNNNNNNNGG 6 cut(s) 155, 156, 192, 272, 458, 654
AgsI TTSAA 4 cut(s) 301, 469, 549, 558
AjuI GAANNNNNNNTTGG 6 cut(s) 68, 100, 586, 618, 840, 872
AluBI AGCT 5 cut(s) 94, 326, 748, 760, 873
AluI AGCT 5 cut(s) 94, 326, 748, 760, 873
Alw26I GTCTC 1 cut(s) 58
AlwNI CAGNNNCTG 1 cut(s) 827
AoxI GGCC 3 cut(s) 71, 246, 720
ApeKI GCWGC 5 cut(s) 45, 226, 317, 530, 839
ApoI RAATTY 4 cut(s) 26, 427, 544, 616
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
Asp718I GGTACC 1 cut(s) 293
AspLEI GCGC 2 cut(s) 231, 844
AspS9I GGNCC 2 cut(s) 72, 246
AsuHPI GGTGA 1 cut(s) 117
AsuII TTCGAA 1 cut(s) 114
BanI GGYRCC 1 cut(s) 293
BarI GAAGNNNNNNTAC 2 cut(s) 194, 226
BbvCI CCTCAGC 1 cut(s) 726
BbvI GCAGC 5 cut(s) 57, 238, 329, 542, 826
BccI CCATC 2 cut(s) 417, 803
BceAI ACGGC 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 58
BfmI CTRYAG 2 cut(s) 211, 651
BfoI RGCGCY 1 cut(s) 232
BglI GCCNNNNNGGC 1 cut(s) 237
BisI GCNGC 7 cut(s) 46, 227, 249, 318, 531, 723, 840
BlsI GCNGC 7 cut(s) 47, 228, 250, 319, 532, 724, 841
BmgT120I GGNCC 2 cut(s) 72, 246
BmiI GGNNCC 1 cut(s) 295
BmsI GCATC 1 cut(s) 228
BplI GAGNNNNNCTC 2 cut(s) 273, 305
Bpu10I CCTNAGC 1 cut(s) 726
Bpu14I TTCGAA 1 cut(s) 114
BsaJI CCNNGG 3 cut(s) 233, 352, 366
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bsc4I CCNNNNNNNGG 6 cut(s) 155, 156, 192, 272, 458, 654
Bse1I ACTGG 1 cut(s) 768
Bse3DI GCAATG 1 cut(s) 443
BseDI CCNNGG 3 cut(s) 233, 352, 366
BseGI GGATG 4 cut(s) 30, 140, 439, 814
BseLI CCNNNNNNNGG 6 cut(s) 155, 156, 192, 272, 458, 654
BseMI GCAATG 1 cut(s) 443
BseMII CTCAG 4 cut(s) 54, 243, 717, 744
BseNI ACTGG 1 cut(s) 768
BseRI GAGGAG 3 cut(s) 637, 743, 770
BseXI GCAGC 5 cut(s) 57, 238, 329, 542, 826
BsgI GTGCAG 2 cut(s) 549, 761
Bsh1236I CGCG 2 cut(s) 89, 261
BshFI GGCC 3 cut(s) 73, 248, 722
BshNI GGYRCC 1 cut(s) 293
BsiSI CCGG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 652
BslI CCNNNNNNNGG 6 cut(s) 155, 156, 192, 272, 458, 654
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 652
BsnI GGCC 3 cut(s) 73, 248, 722
Bsp119I TTCGAA 1 cut(s) 114
Bsp143I GATC 3 cut(s) 166, 514, 862
Bsp19I CCATGG 1 cut(s) 233
Bsp68I TCGCGA 2 cut(s) 89, 261
BspACI CCGC 5 cut(s) 9, 43, 249, 306, 723
BspANI GGCC 3 cut(s) 73, 248, 722
BspCNI CTCAG 4 cut(s) 55, 244, 718, 745
BspFNI CGCG 2 cut(s) 89, 261
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 295
BspT104I TTCGAA 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 293
BsrDI GCAATG 1 cut(s) 443
BsrI ACTGG 1 cut(s) 768
BssECI CCNNGG 3 cut(s) 233, 352, 366
BssMI GATC 3 cut(s) 166, 514, 862
BssT1I CCWWGG 2 cut(s) 233, 366
Bst6I CTCTTC 1 cut(s) 606
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 4 cut(s) 63, 252, 726, 753
BstDSI CCRYGG 2 cut(s) 233, 352
BstENI CCTNNNNNAGG 1 cut(s) 190
BstF5I GGATG 4 cut(s) 30, 140, 439, 814
BstFNI CGCG 2 cut(s) 89, 261
BstH2I RGCGCY 1 cut(s) 232
BstHHI GCGC 2 cut(s) 231, 844
BstKTI GATC 3 cut(s) 169, 517, 865
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 3 cut(s) 166, 514, 862
BstMWI GCNNNNNNNGC 7 cut(s) 20, 45, 237, 314, 323, 719, 858
BstSFI CTRYAG 2 cut(s) 211, 651
BstUI CGCG 2 cut(s) 89, 261
BstV1I GCAGC 5 cut(s) 57, 238, 329, 542, 826
BsuRI GGCC 3 cut(s) 73, 248, 722
BtgI CCRYGG 2 cut(s) 233, 352
BtsCI GGATG 4 cut(s) 30, 140, 439, 814
BtuMI TCGCGA 2 cut(s) 89, 261
Cac8I GCNNGC 1 cut(s) 343
CaiI CAGNNNCTG 1 cut(s) 827
CciI TCATGA 1 cut(s) 163
CfoI GCGC 2 cut(s) 231, 844
Cfr13I GGNCC 2 cut(s) 72, 246
Csp6I GTAC 2 cut(s) 294, 400
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 5 cut(s) 164, 234, 781, 853, 887
CviQI GTAC 2 cut(s) 294, 400
DdeI CTNAG 4 cut(s) 63, 252, 726, 753
DpnI GATC 3 cut(s) 168, 516, 864
DpnII GATC 3 cut(s) 166, 514, 862
EaeI YGGCCR 1 cut(s) 720
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
Eco130I CCWWGG 2 cut(s) 233, 366
Eco57I CTGAAG 1 cut(s) 330
EcoNI CCTNNNNNAGG 1 cut(s) 190
EcoRI GAATTC 2 cut(s) 26, 616
EcoT14I CCWWGG 2 cut(s) 233, 366
ErhI CCWWGG 2 cut(s) 233, 366
FaeI CATG 5 cut(s) 167, 237, 784, 856, 890
FaqI GGGAC 1 cut(s) 652
FatI CATG 5 cut(s) 163, 233, 780, 852, 886
Fnu4HI GCNGC 7 cut(s) 46, 227, 249, 318, 531, 723, 840
FokI GGATG 4 cut(s) 17, 127, 426, 821
Fsp4HI GCNGC 7 cut(s) 46, 227, 249, 318, 531, 723, 840
FspI TGCGCA 1 cut(s) 843
GlaI GCGC 2 cut(s) 230, 843
GluI GCNGC 7 cut(s) 46, 227, 249, 318, 531, 723, 840
HaeII RGCGCY 1 cut(s) 232
HaeIII GGCC 3 cut(s) 73, 248, 722
HapII CCGG 1 cut(s) 57
HhaI GCGC 2 cut(s) 231, 844
Hin1II CATG 5 cut(s) 167, 237, 784, 856, 890
Hin6I GCGC 2 cut(s) 229, 842
HinP1I GCGC 2 cut(s) 229, 842
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 5 cut(s) 256, 276, 282, 695, 796
HpaII CCGG 1 cut(s) 57
HphI GGTGA 1 cut(s) 117
Hpy166II GTNNAC 1 cut(s) 819
Hpy188I TCNGA 9 cut(s) 64, 132, 281, 414, 423, 519, 634, 754, 795
Hpy188III TCNNGA 6 cut(s) 88, 101, 164, 170, 260, 806
Hpy8I GTNNAC 1 cut(s) 819
HpyAV CCTTC 3 cut(s) 94, 307, 682
HpyCH4V TGCA 4 cut(s) 448, 530, 669, 742
HpyF10VI GCNNNNNNNGC 7 cut(s) 20, 45, 237, 314, 323, 719, 858
HpyF3I CTNAG 4 cut(s) 63, 252, 726, 753
Hsp92II CATG 5 cut(s) 167, 237, 784, 856, 890
HspAI GCGC 2 cut(s) 229, 842
KpnI GGTACC 1 cut(s) 297
Kzo9I GATC 3 cut(s) 166, 514, 862
LmnI GCTCC 2 cut(s) 757, 870
Lsp1109I GCAGC 5 cut(s) 57, 238, 329, 542, 826
LweI GCATC 1 cut(s) 228
MaeIII GTNAC 2 cut(s) 671, 907
MalI GATC 3 cut(s) 168, 516, 864
MboI GATC 3 cut(s) 166, 514, 862
MboII GAAGA 7 cut(s) 103, 185, 214, 323, 398, 623, 906
MfeI CAATTG 1 cut(s) 594
MluCI AATT 8 cut(s) 26, 106, 373, 427, 463, 544, 594, 616
MlyI GAGTC 2 cut(s) 285, 291
MseI TTAA 3 cut(s) 372, 567, 582
MslI CAYNNNNRTG 1 cut(s) 891
MspA1I CMGCKG 3 cut(s) 251, 308, 725
MspI CCGG 1 cut(s) 57
MunI CAATTG 1 cut(s) 594
MvnI CGCG 2 cut(s) 89, 261
MwoI GCNNNNNNNGC 7 cut(s) 20, 45, 237, 314, 323, 719, 858
NcoI CCATGG 1 cut(s) 233
NdeII GATC 3 cut(s) 166, 514, 862
NlaIII CATG 5 cut(s) 167, 237, 784, 856, 890
NlaIV GGNNCC 1 cut(s) 295
NmuCI GTSAC 2 cut(s) 671, 907
NruI TCGCGA 2 cut(s) 89, 261
NsbI TGCGCA 1 cut(s) 843
NspV TTCGAA 1 cut(s) 114
PagI TCATGA 1 cut(s) 163
PcsI WCGNNNNNNNCGW 1 cut(s) 349
PfeI GAWTC 3 cut(s) 256, 695, 796
PkrI GCNGC 7 cut(s) 47, 228, 250, 319, 532, 724, 841
PleI GAGTC 2 cut(s) 284, 290
PpsI GAGTC 2 cut(s) 284, 290
PspN4I GGNNCC 1 cut(s) 295
PspPI GGNCC 2 cut(s) 72, 246
PstNI CAGNNNCTG 1 cut(s) 827
RruI TCGCGA 2 cut(s) 89, 261
RsaI GTAC 2 cut(s) 295, 401
RsaNI GTAC 2 cut(s) 294, 400
RseI CAYNNNNRTG 1 cut(s) 891
SaqAI TTAA 3 cut(s) 372, 567, 582
SatI GCNGC 7 cut(s) 46, 227, 249, 318, 531, 723, 840
Sau3AI GATC 3 cut(s) 166, 514, 862
Sau96I GGNCC 2 cut(s) 72, 246
SchI GAGTC 2 cut(s) 285, 291
SetI ASST 9 cut(s) 96, 130, 210, 299, 328, 372, 750, 762, 875
SfaNI GCATC 1 cut(s) 228
SfcI CTRYAG 2 cut(s) 211, 651
SfuI TTCGAA 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 891
Sse9I AATT 8 cut(s) 26, 106, 373, 427, 463, 544, 594, 616
SsiI CCGC 5 cut(s) 9, 43, 249, 306, 723
StyI CCWWGG 2 cut(s) 233, 366
TaqI TCGA 2 cut(s) 114, 921
TasI AATT 8 cut(s) 26, 106, 373, 427, 463, 544, 594, 616
TauI GCSGC 2 cut(s) 251, 725
TfiI GAWTC 3 cut(s) 256, 695, 796
Tru1I TTAA 3 cut(s) 372, 567, 582
Tru9I TTAA 3 cut(s) 372, 567, 582
TseFI GTSAC 2 cut(s) 671, 907
TseI GCWGC 5 cut(s) 45, 226, 317, 530, 839
Tsp45I GTSAC 2 cut(s) 671, 907
TspDTI ATGAA 4 cut(s) 19, 399, 750, 797
TspGWI ACGGA 1 cut(s) 341
XagI CCTNNNNNAGG 1 cut(s) 190
XapI RAATTY 4 cut(s) 26, 427, 544, 616
XcmI CCANNNNNNNNNTGG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.