Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000248.1

Orthogroup ID

OG0011065

Physical Location & Seq

Genomic Coordinates Reverse (-)

52256 .. 53279

Gene Structure 1024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000248.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgtgtggcggtgctataatcgctgaattcatccctcgcaaccgcagccgtgtctccggctctgagatatggcccaactcgtccttcgcgaagctcaatcccgacaatttcttcaacttagatctcaccccacctactcacaaggactcacgtccgagcaaaacatcccaacccttttcagggggtctggaagaacagaagcccgccaagaggcagaggaagaacctctacagaggcatcaggcagcgcccatggggcaaatgggccgctgagattcgcgaccctagaaaaggagtccgagtctggctcggtaccttcaacaccgctgaagaagcagccagagcttatgacagggaggctcgcaaaatccgtggcaagaaagccaaggttaattttcctaatgaagatgaccaagagtaccacccccatcagacttatctgaaaaattccaatcctcatccatttcaacccaatacaggtaatttcaatgacaatcatatcccaaaaggctttgatatgggatttggttacgatctgaaccagagtgcagcatttccctcaaattcaaatggttcaaatggttttaactcggtggtagttaatactgacccaattgttgtttctggggaagagaattctgggtctggttcagaggggacttactcctctacagggttggtggggaaagagaaagaggaatcaacacaaagtaatgcgattgtggccgctgaggagaatgaagtgcagaagctttctgaggagctactggcgtttgagaactacatgaagttctatcagattccctatctggatgggcagtccacagcccctgtaaatcctgcgcagcaggaaagcatggttggcgatctgtggagctttgatgatgagaatgggaatgttcctgcttctgtcacatcttcctttgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0034059 GO:0036293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0070482 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

309

Amino Acids

34.37

Weight (kDa)

5.54

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47520
fragaria_vesca	FvH4_2g26080 FvH4_2g26080 FvH4_2g26080
malus_domestica	MD11G1306500.v1.1
prunus_persica	Prupe.8G264900_v2.0.a1
pyrus_communis	pycom03g23120 pycom11g26820
rosa_chinensis	RchiOBHm_Chr6g0294441
rosa_laevigata	RLG00000011869
rosa_multiflora	Rmu_co8464789.1_g000002 Rmu_ssc0000248.1_g000011 Rmu_ssc0000248.1_g000012
rosa_roxburghii	Rroxscaffold_7G00173330
rosa_rugosa	Rorug06G0244700
rosa_samantha	Rh6AG357200 Rh6BG364100 Rh6CG371200 Rh6DG358000
rosa_wichuraiana	Rw6G031140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	843
Acc65I	GGTACC	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	311
AccII	CGCG	2 cut(s)	89, 279
AciI	CCGC	6 cut(s)	9, 43, 204, 267, 324, 726
AcoI	YGGCCR	1 cut(s)	723
AcsI	RAATTY	4 cut(s)	26, 445, 562, 634
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	2 cut(s)	313, 419
AfiI	CCNNNNNNNGG	6 cut(s)	179, 180, 210, 290, 476, 672
AgsI	TTSAA	6 cut(s)	115, 319, 467, 487, 567, 576
AjiI	CACGTC	1 cut(s)	152
AjuI	GAANNNNNNNTTGG	6 cut(s)	68, 100, 604, 636, 843, 875
AluBI	AGCT	5 cut(s)	94, 344, 751, 763, 876
AluI	AGCT	5 cut(s)	94, 344, 751, 763, 876
Alw26I	GTCTC	1 cut(s)	58
AlwNI	CAGNNNCTG	1 cut(s)	830
AoxI	GGCC	3 cut(s)	71, 264, 723
ApeKI	GCWGC	5 cut(s)	45, 244, 335, 548, 844
ApoI	RAATTY	4 cut(s)	26, 445, 562, 634
Asp718I	GGTACC	1 cut(s)	311
AspLEI	GCGC	2 cut(s)	249, 844
AspS9I	GGNCC	2 cut(s)	72, 264
AsuHPI	GGTGA	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	311
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
BbvCI	CCTCAGC	1 cut(s)	729
BbvI	GCAGC	5 cut(s)	57, 256, 347, 560, 856
BccI	CCATC	2 cut(s)	435, 806
BceAI	ACGGC	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	2 cut(s)	229, 669
BfoI	RGCGCY	1 cut(s)	250
BglI	GCCNNNNNGGC	1 cut(s)	255
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	7 cut(s)	46, 245, 267, 336, 549, 726, 845
BlsI	GCNGC	7 cut(s)	47, 246, 268, 337, 550, 727, 846
BmgBI	CACGTC	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	72, 264
BmiI	GGNNCC	1 cut(s)	313
BmsI	GCATC	1 cut(s)	246
BoxI	GACNNNNGTC	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
Bpu10I	CCTNAGC	1 cut(s)	729
BsaJI	CCNNGG	3 cut(s)	251, 370, 384
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	6 cut(s)	179, 180, 210, 290, 476, 672
Bse1I	ACTGG	1 cut(s)	771
BseDI	CCNNGG	3 cut(s)	251, 370, 384
BseGI	GGATG	4 cut(s)	30, 164, 457, 817
BseLI	CCNNNNNNNGG	6 cut(s)	179, 180, 210, 290, 476, 672
BseMII	CTCAG	4 cut(s)	54, 261, 720, 747
BseNI	ACTGG	1 cut(s)	771
BseRI	GAGGAG	3 cut(s)	655, 746, 773
BseXI	GCAGC	5 cut(s)	57, 256, 347, 560, 856
BsgI	GTGCAG	2 cut(s)	567, 764
Bsh1236I	CGCG	2 cut(s)	89, 279
BshFI	GGCC	3 cut(s)	73, 266, 725
BshNI	GGYRCC	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	670
BslI	CCNNNNNNNGG	6 cut(s)	179, 180, 210, 290, 476, 672
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	670
BsnI	GGCC	3 cut(s)	73, 266, 725
Bsp143I	GATC	3 cut(s)	121, 532, 865
Bsp19I	CCATGG	1 cut(s)	251
Bsp68I	TCGCGA	2 cut(s)	89, 279
BspACI	CCGC	6 cut(s)	9, 43, 204, 267, 324, 726
BspANI	GGCC	3 cut(s)	73, 266, 725
BspCNI	CTCAG	4 cut(s)	55, 262, 721, 748
BspFNI	CGCG	2 cut(s)	89, 279
BspLI	GGNNCC	1 cut(s)	313
BspT107I	GGYRCC	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	771
BssECI	CCNNGG	3 cut(s)	251, 370, 384
BssMI	GATC	3 cut(s)	121, 532, 865
BssT1I	CCWWGG	2 cut(s)	251, 384
Bst6I	CTCTTC	1 cut(s)	624
BstC8I	GCNNGC	2 cut(s)	204, 361
BstDEI	CTNAG	5 cut(s)	63, 118, 270, 729, 756
BstDSI	CCRYGG	2 cut(s)	251, 370
BstENI	CCTNNNNNAGG	1 cut(s)	288
BstF5I	GGATG	4 cut(s)	30, 164, 457, 817
BstFNI	CGCG	2 cut(s)	89, 279
BstH2I	RGCGCY	1 cut(s)	250
BstHHI	GCGC	2 cut(s)	249, 844
BstKTI	GATC	3 cut(s)	124, 535, 868
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	3 cut(s)	121, 532, 865
BstMWI	GCNNNNNNNGC	7 cut(s)	20, 45, 255, 332, 341, 722, 861
BstPAI	GACNNNNGTC	1 cut(s)	150
BstSFI	CTRYAG	2 cut(s)	229, 669
BstUI	CGCG	2 cut(s)	89, 279
BstV1I	GCAGC	5 cut(s)	57, 256, 347, 560, 856
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	3 cut(s)	73, 266, 725
BtgI	CCRYGG	2 cut(s)	251, 370
BtrI	CACGTC	1 cut(s)	152
BtsCI	GGATG	4 cut(s)	30, 164, 457, 817
BtuMI	TCGCGA	2 cut(s)	89, 279
Cac8I	GCNNGC	2 cut(s)	204, 361
CaiI	CAGNNNCTG	1 cut(s)	830
CfoI	GCGC	2 cut(s)	249, 844
Cfr13I	GGNCC	2 cut(s)	72, 264
Csp6I	GTAC	2 cut(s)	312, 418
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviAII	CATG	3 cut(s)	252, 784, 856
CviQI	GTAC	2 cut(s)	312, 418
DdeI	CTNAG	5 cut(s)	63, 118, 270, 729, 756
DpnI	GATC	3 cut(s)	123, 534, 867
DpnII	GATC	3 cut(s)	121, 532, 865
EaeI	YGGCCR	1 cut(s)	723
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
Eco130I	CCWWGG	2 cut(s)	251, 384
Eco57I	CTGAAG	1 cut(s)	348
EcoNI	CCTNNNNNAGG	1 cut(s)	288
EcoRI	GAATTC	2 cut(s)	26, 634
EcoT14I	CCWWGG	2 cut(s)	251, 384
ErhI	CCWWGG	2 cut(s)	251, 384
FaeI	CATG	3 cut(s)	255, 787, 859
FaiI	YATR	8 cut(s)	17, 70, 253, 348, 498, 518, 785, 857
FaqI	GGGAC	1 cut(s)	670
FatI	CATG	3 cut(s)	251, 783, 855
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	7 cut(s)	46, 245, 267, 336, 549, 726, 845
FokI	GGATG	4 cut(s)	17, 151, 444, 824
Fsp4HI	GCNGC	7 cut(s)	46, 245, 267, 336, 549, 726, 845
FspBI	CTAG	1 cut(s)	285
FspI	TGCGCA	1 cut(s)	843
GlaI	GCGC	2 cut(s)	248, 843
GluI	GCNGC	7 cut(s)	46, 245, 267, 336, 549, 726, 845
HaeII	RGCGCY	1 cut(s)	250
HaeIII	GGCC	3 cut(s)	73, 266, 725
HapII	CCGG	1 cut(s)	57
HhaI	GCGC	2 cut(s)	249, 844
Hin1II	CATG	3 cut(s)	255, 787, 859
Hin6I	GCGC	2 cut(s)	247, 842
HinP1I	GCGC	2 cut(s)	247, 842
HindIII	AAGCTT	1 cut(s)	749
HinfI	GANTC	6 cut(s)	146, 274, 294, 300, 698, 799
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	822
Hpy188I	TCNGA	9 cut(s)	64, 156, 299, 432, 441, 537, 652, 757, 798
Hpy188III	TCNNGA	5 cut(s)	88, 101, 188, 278, 809
Hpy8I	GTNNAC	1 cut(s)	822
HpyAV	CCTTC	2 cut(s)	94, 325
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	2 cut(s)	548, 745
HpyF10VI	GCNNNNNNNGC	7 cut(s)	20, 45, 255, 332, 341, 722, 861
HpyF3I	CTNAG	5 cut(s)	63, 118, 270, 729, 756
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	3 cut(s)	255, 787, 859
HspAI	GCGC	2 cut(s)	247, 842
KpnI	GGTACC	1 cut(s)	315
Kzo9I	GATC	3 cut(s)	121, 532, 865
LmnI	GCTCC	2 cut(s)	760, 873
Lsp1109I	GCAGC	5 cut(s)	57, 256, 347, 560, 856
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	2 cut(s)	527, 910
MalI	GATC	3 cut(s)	123, 534, 867
MboI	GATC	3 cut(s)	121, 532, 865
MboII	GAAGA	7 cut(s)	103, 203, 232, 341, 416, 641, 909
MfeI	CAATTG	1 cut(s)	612
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	8 cut(s)	26, 106, 391, 445, 481, 562, 612, 634
MlyI	GAGTC	3 cut(s)	140, 303, 309
MseI	TTAA	3 cut(s)	390, 585, 600
MspA1I	CMGCKG	3 cut(s)	269, 326, 728
MspI	CCGG	1 cut(s)	57
MunI	CAATTG	1 cut(s)	612
MvnI	CGCG	2 cut(s)	89, 279
MwoI	GCNNNNNNNGC	7 cut(s)	20, 45, 255, 332, 341, 722, 861
NcoI	CCATGG	1 cut(s)	251
NdeII	GATC	3 cut(s)	121, 532, 865
NlaIII	CATG	3 cut(s)	255, 787, 859
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	910
NruI	TCGCGA	2 cut(s)	89, 279
NsbI	TGCGCA	1 cut(s)	843
PcsI	WCGNNNNNNNCGW	2 cut(s)	86, 367
PfeI	GAWTC	3 cut(s)	274, 698, 799
PkrI	GCNGC	7 cut(s)	47, 246, 268, 337, 550, 727, 846
PleI	GAGTC	3 cut(s)	140, 302, 308
PpsI	GAGTC	3 cut(s)	140, 302, 308
PshAI	GACNNNNGTC	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	2 cut(s)	72, 264
PstNI	CAGNNNCTG	1 cut(s)	830
PsuI	RGATCY	1 cut(s)	121
RruI	TCGCGA	2 cut(s)	89, 279
RsaI	GTAC	2 cut(s)	313, 419
RsaNI	GTAC	2 cut(s)	312, 418
SaqAI	TTAA	3 cut(s)	390, 585, 600
SatI	GCNGC	7 cut(s)	46, 245, 267, 336, 549, 726, 845
Sau3AI	GATC	3 cut(s)	121, 532, 865
Sau96I	GGNCC	2 cut(s)	72, 264
SchI	GAGTC	3 cut(s)	140, 303, 309
SfaNI	GCATC	1 cut(s)	246
SfcI	CTRYAG	2 cut(s)	229, 669
Sse9I	AATT	8 cut(s)	26, 106, 391, 445, 481, 562, 612, 634
SsiI	CCGC	6 cut(s)	9, 43, 204, 267, 324, 726
SspMI	CTAG	1 cut(s)	285
StyI	CCWWGG	2 cut(s)	251, 384
TaiI	ACGT	1 cut(s)	154
TasI	AATT	8 cut(s)	26, 106, 391, 445, 481, 562, 612, 634
TauI	GCSGC	2 cut(s)	269, 728
TfiI	GAWTC	3 cut(s)	274, 698, 799
Tru1I	TTAA	3 cut(s)	390, 585, 600
Tru9I	TTAA	3 cut(s)	390, 585, 600
TseFI	GTSAC	1 cut(s)	910
TseI	GCWGC	5 cut(s)	45, 244, 335, 548, 844
Tsp45I	GTSAC	1 cut(s)	910
TspDTI	ATGAA	4 cut(s)	19, 417, 753, 800
TspGWI	ACGGA	1 cut(s)	359
XagI	CCTNNNNNAGG	1 cut(s)	288
XapI	RAATTY	4 cut(s)	26, 445, 562, 634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	258
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.