Rorug06G0244700

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008322
Physical Location & Seq
Reverse (-)
39099982 .. 39127042
27061 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0244700.1

Sequence Viewer

Length: 1425 bp
ATGTGGAATGTTGTGGGATTGAGTTTAGTAGCTATGCTAGTGATATATATCACTCACTGGATAGCCAAATGGAGGAACCCAAAATGCAATGGGGTTCTGCCTCCTGGTTCCATGGGCTTGCCTCTCATTGGAGAGACCTTAAGTTTGATCATTCCAAGCTACTCCCTAGATGTTCATCCATTCATTAAGAAGAGACTTCAAAAATATGGGCCTATATTCCGGACTAGTTTGGTGGGTCAACCTGTCGTAATATCAGCTGATCCTGAGTTCAATAACTACATATTTCAGCAAGAAGGCAAGTCTGTTGAACAATGGTACATGGATGCAATGTCAAAAGTCTTTGTAGGCGATACCAAGGCAAATGCAACTGGCGTCATCCACAAGTACGTGAGGAGCATATTCATGATACACTTTGGTGCTGAGAACCTCAAGGAAAAGTTGCTCCCTCAAATGGAGGAATGCGTTAACAAAACTCTACATGCATGGTCTAGTAGGGCATCTGTAGAAGTGAAGCATGCTGCCTCAGTTATGGTTTTGAATTTTATTGCAAAGCAGATGATCAGTTATGATGCTGAAAAATTAACCGAGAACCTGAGTGAGAAATTTGCTGAAGTCATTGAAGGTCTTATGTCATTTCCTTTGAATATTCCTGGTACTGGATACTACAAGTGTTTGAAGGGCCAAAAGAAGGTAACAACCATGCTGAGAGATGTGTTAAAGCAGAGATGCAATTCACCCGAGACACACCGAGGAGATTTCGTTGATCAATTATGCAATGACATGGAGAAAGAGAAGTTCTTGACAGAGGATTTTGGGGTCATGATGATATTTGGGGGCTTATTTGCGGCCTTTGAGTCCATTTCAGCTGTATTGACTTTAGCTTTTAGTCTACTGGAACAACATCCCTCAGTCTTACAAGAGTTGACTGCTGAGCATGATGCAATTCTCAGAAATAGAGAGAATCCGAATTCTCCACTCACATGGGACGAATATAAGTCCATGACTTTCACTCTTCAGGTTATCAACGAAACTCTCAGGCTGGGAAATGTTGCACCTGGCTTGTTACGCAGAGCTTTGAAAGATGTCACAATAAAAGGGTATACAATTCCGGAAGATTGGACCATTATGGTTGTCCCCTCTGCTCTTTACTTGAGTCCCAAGTCATTCAAGGATCCCCTCGAGTTCAATCCATGGCGTTGGAAGGACCTTGATTCACTTGCTACATCAAAGATCTTCATGCCTTTTGGTGGAGGAATGAGGCAATGTGCTGGAGCAGAGTATAGTAAAGTGTTCTTGGCCACTTTTCTTCATGTATTTGTCACCAAGTTTAGCTCCACAACAATCAAAGGAGCACGTGTTGCTCGAAATCCTAATTTAGCATTTGGCGGTGGTATGCACATCAAGTTTTCAGAGAAGACAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

474

Amino Acids

53.42

Weight (kDa)

8.78

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 34 - 455 9.4e-56 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 889, 1100
AccIII TCCGGA 2 cut(s) 219, 1108
AciI CCGC 2 cut(s) 845, 1386
AclWI GGATC 3 cut(s) 254, 1166, 1179
AcoI YGGCCR 1 cut(s) 1296
AcsI RAATTY 3 cut(s) 538, 602, 967
AcuI CTGAAG 2 cut(s) 630, 998
AcvI CACGTG 1 cut(s) 1355
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 3 cut(s) 317, 386, 655
AfiI CCNNNNNNNGG 6 cut(s) 72, 128, 451, 656, 688, 1247
AflII CTTAAG 1 cut(s) 139
AflIII ACRYGT 1 cut(s) 1354
AhlI ACTAGT 1 cut(s) 224
AjnI CCWGG 3 cut(s) 103, 649, 1054
AleI CACNNNNGTG 1 cut(s) 414
AluBI AGCT 7 cut(s) 32, 159, 257, 866, 881, 1073, 1332
AluI AGCT 7 cut(s) 32, 159, 257, 866, 881, 1073, 1332
Alw21I GWGCWC 1 cut(s) 1354
Alw26I GTCTC 3 cut(s) 128, 187, 734
AlwI GGATC 3 cut(s) 254, 1166, 1179
Ama87I CYCGRG 2 cut(s) 737, 1178
Aor13HI TCCGGA 2 cut(s) 219, 1108
AoxI GGCC 4 cut(s) 209, 679, 846, 1296
ApeKI GCWGC 1 cut(s) 518
ApoI RAATTY 3 cut(s) 538, 602, 967
ArsI GACNNNNNNTTYG 2 cut(s) 127, 159
AspS9I GGNCC 4 cut(s) 209, 679, 1119, 1204
AsuHPI GGTGA 2 cut(s) 726, 1312
AvaI CYCGRG 2 cut(s) 737, 1178
AvaII GGWCC 2 cut(s) 1119, 1204
BalI TGGCCA 1 cut(s) 1298
BamHI GGATCC 1 cut(s) 1171
BbrPI CACGTG 1 cut(s) 1355
BbsI GAAGAC 1 cut(s) 1421
Bbv12I GWGCWC 1 cut(s) 1354
BbvI GCAGC 1 cut(s) 505
BciT130I CCWGG 3 cut(s) 105, 651, 1056
BciVI GTATCC 1 cut(s) 653
BclI TGATCA 3 cut(s) 147, 558, 763
BcoDI GTCTC 3 cut(s) 128, 187, 734
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 4 cut(s) 38, 167, 225, 489
BfmI CTRYAG 1 cut(s) 501
BfrI CTTAAG 1 cut(s) 139
BfuI GTATCC 1 cut(s) 653
BglII AGATCT 1 cut(s) 1230
BisI GCNGC 2 cut(s) 519, 846
BlpI GCTNAGC 1 cut(s) 930
BlsI GCNGC 2 cut(s) 520, 847
Bme1390I CCNGG 3 cut(s) 105, 651, 1056
Bme18I GGWCC 2 cut(s) 1119, 1204
BmeT110I CYCGRG 2 cut(s) 737, 1178
BmgT120I GGNCC 4 cut(s) 209, 679, 1119, 1204
BmiI GGNNCC 3 cut(s) 77, 109, 1173
BmrFI CCNGG 3 cut(s) 105, 651, 1056
BmsI GCATC 5 cut(s) 313, 506, 559, 716, 928
BpiI GAAGAC 1 cut(s) 1421
BpmI CTGGAG 1 cut(s) 1290
Bpu1102I GCTNAGC 1 cut(s) 930
BpuEI CTTGAG 2 cut(s) 413, 1171
BsaAI YACGTR 2 cut(s) 388, 1355
BsaBI GATNNNNATC 2 cut(s) 47, 174
BsaHI GRCGYC 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 4 cut(s) 111, 354, 748, 1190
BsaWI WCCGGW 2 cut(s) 219, 1108
BsaXI ACNNNNNCTCC 4 cut(s) 744, 774, 1341, 1371
Bsc4I CCNNNNNNNGG 6 cut(s) 72, 128, 451, 656, 688, 1247
Bse1I ACTGG 4 cut(s) 62, 373, 661, 897
Bse3DI GCAATG 4 cut(s) 94, 333, 781, 1268
Bse8I GATNNNNATC 2 cut(s) 47, 174
BseAI TCCGGA 2 cut(s) 219, 1108
BseBI CCWGG 3 cut(s) 105, 651, 1056
BseDI CCNNGG 4 cut(s) 111, 354, 748, 1190
BseGI GGATG 4 cut(s) 175, 328, 375, 901
BseJI GATNNNNATC 2 cut(s) 47, 174
BseLI CCNNNNNNNGG 6 cut(s) 72, 128, 451, 656, 688, 1247
BseMI GCAATG 4 cut(s) 94, 333, 781, 1268
BseMII CTCAG 9 cut(s) 255, 411, 537, 584, 695, 921, 921, 961, 1048
BseNI ACTGG 4 cut(s) 62, 373, 661, 897
BseRI GAGGAG 2 cut(s) 406, 765
BseXI GCAGC 1 cut(s) 505
BseYI CCCAGC 1 cut(s) 1039
BshFI GGCC 4 cut(s) 211, 681, 848, 1298
BsiHKAI GWGCWC 1 cut(s) 1354
BsiHKCI CYCGRG 2 cut(s) 737, 1178
BsiSI CCGG 2 cut(s) 220, 1109
BslFI GGGAC 3 cut(s) 998, 1118, 1140
BslI CCNNNNNNNGG 6 cut(s) 72, 128, 451, 656, 688, 1247
BsmAI GTCTC 3 cut(s) 128, 187, 734
BsmFI GGGAC 3 cut(s) 998, 1118, 1140
BsmI GAATGC 1 cut(s) 464
BsnI GGCC 4 cut(s) 211, 681, 848, 1298
Bso31I GGTCTC 1 cut(s) 128
BsoBI CYCGRG 2 cut(s) 737, 1178
Bsp1286I GDGCHC 1 cut(s) 1354
Bsp13I TCCGGA 2 cut(s) 219, 1108
Bsp143I GATC 6 cut(s) 147, 259, 558, 763, 1171, 1230
Bsp1720I GCTNAGC 1 cut(s) 930
Bsp19I CCATGG 2 cut(s) 111, 1190
BspACI CCGC 2 cut(s) 845, 1386
BspANI GGCC 4 cut(s) 211, 681, 848, 1298
BspCNI CTCAG 9 cut(s) 256, 412, 536, 585, 696, 920, 922, 960, 1047
BspEI TCCGGA 2 cut(s) 219, 1108
BspHI TCATGA 2 cut(s) 402, 819
BspLI GGNNCC 3 cut(s) 77, 109, 1173
BspPI GGATC 3 cut(s) 254, 1166, 1179
BspTI CTTAAG 1 cut(s) 139
BspTNI GGTCTC 1 cut(s) 128
BsrDI GCAATG 4 cut(s) 94, 333, 781, 1268
BsrI ACTGG 4 cut(s) 62, 373, 661, 897
BssECI CCNNGG 4 cut(s) 111, 354, 748, 1190
BssMI GATC 6 cut(s) 147, 259, 558, 763, 1171, 1230
BssNAI GTATAC 1 cut(s) 1101
BssNI GRCGYC 1 cut(s) 372
BssT1I CCWWGG 3 cut(s) 111, 354, 1190
Bst1107I GTATAC 1 cut(s) 1101
Bst2UI CCWGG 3 cut(s) 105, 651, 1056
Bst6I CTCTTC 2 cut(s) 185, 1017
BstACI GRCGYC 1 cut(s) 372
BstAFI CTTAAG 1 cut(s) 139
BstAPI GCANNNNNTGC 1 cut(s) 1358
BstBAI YACGTR 2 cut(s) 388, 1355
BstC8I GCNNGC 2 cut(s) 119, 516
BstDEI CTNAG 9 cut(s) 264, 420, 523, 593, 704, 907, 930, 947, 1034
BstDSI CCRYGG 2 cut(s) 111, 1190
BstF5I GGATG 4 cut(s) 175, 328, 375, 901
BstKTI GATC 6 cut(s) 150, 262, 561, 766, 1174, 1233
BstMAI GTCTC 3 cut(s) 128, 187, 734
BstMBI GATC 6 cut(s) 147, 259, 558, 763, 1171, 1230
BstMWI GCNNNNNNNGC 2 cut(s) 1065, 1358
BstNI CCWGG 3 cut(s) 105, 651, 1056
BstNSI RCATGY 2 cut(s) 482, 518
BstSCI CCNGG 3 cut(s) 103, 649, 1054
BstSFI CTRYAG 1 cut(s) 501
BstV1I GCAGC 1 cut(s) 505
BstV2I GAAGAC 1 cut(s) 1421
BstX2I RGATCY 2 cut(s) 1171, 1230
BstXI CCANNNNNNTGG 2 cut(s) 981, 1197
BstYI RGATCY 2 cut(s) 1171, 1230
BstZ17I GTATAC 1 cut(s) 1101
BsuI GTATCC 1 cut(s) 653
BsuRI GGCC 4 cut(s) 211, 681, 848, 1298
BtgI CCRYGG 2 cut(s) 111, 1190
BtsCI GGATG 4 cut(s) 175, 328, 375, 901
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 2 cut(s) 119, 516
CciI TCATGA 2 cut(s) 402, 819
Cfr13I GGNCC 4 cut(s) 209, 679, 1119, 1204
CseI GACGC 1 cut(s) 361
Csp6I GTAC 3 cut(s) 316, 385, 654
CviQI GTAC 3 cut(s) 316, 385, 654
DdeI CTNAG 9 cut(s) 264, 420, 523, 593, 704, 907, 930, 947, 1034
DpnI GATC 6 cut(s) 149, 261, 560, 765, 1173, 1232
DpnII GATC 6 cut(s) 147, 259, 558, 763, 1171, 1230
EaeI YGGCCR 1 cut(s) 1296
Eam1104I CTCTTC 2 cut(s) 185, 1017
EarI CTCTTC 2 cut(s) 185, 1017
Eco130I CCWWGG 3 cut(s) 111, 354, 1190
Eco31I GGTCTC 1 cut(s) 128
Eco47I GGWCC 2 cut(s) 1119, 1204
Eco57I CTGAAG 2 cut(s) 630, 998
Eco72I CACGTG 1 cut(s) 1355
Eco88I CYCGRG 2 cut(s) 737, 1178
EcoO109I RGGNCCY 1 cut(s) 1204
EcoRI GAATTC 1 cut(s) 967
EcoRII CCWGG 3 cut(s) 103, 649, 1054
EcoT14I CCWWGG 3 cut(s) 111, 354, 1190
EcoT22I ATGCAT 1 cut(s) 484
ErhI CCWWGG 3 cut(s) 111, 354, 1190
FaqI GGGAC 3 cut(s) 998, 1118, 1140
FbaI TGATCA 3 cut(s) 147, 558, 763
FblI GTMKAC 2 cut(s) 889, 1100
Fnu4HI GCNGC 2 cut(s) 519, 846
FokI GGATG 4 cut(s) 162, 335, 362, 888
Fsp4HI GCNGC 2 cut(s) 519, 846
FspBI CTAG 4 cut(s) 38, 167, 225, 489
GluI GCNGC 2 cut(s) 519, 846
GsaI CCCAGC 1 cut(s) 1043
GsuI CTGGAG 1 cut(s) 1290
HaeIII GGCC 4 cut(s) 211, 681, 848, 1298
HapII CCGG 2 cut(s) 220, 1109
HgaI GACGC 1 cut(s) 361
Hin1I GRCGYC 1 cut(s) 372
HincII GTYRAC 3 cut(s) 239, 466, 924
HindII GTYRAC 3 cut(s) 239, 466, 924
HinfI GANTC 4 cut(s) 854, 961, 1153, 1211
HpaI GTTAAC 1 cut(s) 466
HpaII CCGG 2 cut(s) 220, 1109
HphI GGTGA 2 cut(s) 726, 1312
Hpy166II GTNNAC 5 cut(s) 239, 466, 890, 924, 1101
Hpy188I TCNGA 3 cut(s) 950, 966, 1411
Hpy188III TCNNGA 6 cut(s) 220, 263, 403, 799, 820, 1109
Hpy8I GTNNAC 5 cut(s) 239, 466, 890, 924, 1101
HpyAV CCTTC 5 cut(s) 287, 614, 670, 682, 1195
HpyCH4IV ACGT 2 cut(s) 387, 1354
HpyF10VI GCNNNNNNNGC 2 cut(s) 1065, 1358
HpyF3I CTNAG 9 cut(s) 264, 420, 523, 593, 704, 907, 930, 947, 1034
HpySE526I ACGT 2 cut(s) 387, 1354
Hsp92I GRCGYC 1 cut(s) 372
Kpn2I TCCGGA 2 cut(s) 219, 1108
Ksp22I TGATCA 3 cut(s) 147, 558, 763
KspAI GTTAAC 1 cut(s) 466
Kzo9I GATC 6 cut(s) 147, 259, 558, 763, 1171, 1230
LmnI GCTCC 5 cut(s) 393, 447, 1271, 1337, 1349
Lsp1109I GCAGC 1 cut(s) 505
LweI GCATC 5 cut(s) 313, 506, 559, 716, 928
MaeI CTAG 4 cut(s) 38, 167, 225, 489
MaeII ACGT 2 cut(s) 387, 1354
MaeIII GTNAC 4 cut(s) 691, 1062, 1084, 1318
MalI GATC 6 cut(s) 149, 261, 560, 765, 1173, 1232
MboI GATC 6 cut(s) 147, 259, 558, 763, 1171, 1230
MboII GAAGA 5 cut(s) 202, 1004, 1124, 1225, 1298
MflI RGATCY 2 cut(s) 1171, 1230
MhlI GDGCHC 1 cut(s) 1354
MlsI TGGCCA 1 cut(s) 1298
MluCI AATT 9 cut(s) 538, 578, 602, 730, 767, 942, 967, 1104, 1372
MluNI TGGCCA 1 cut(s) 1298
MlyI GAGTC 2 cut(s) 863, 1162
MmeI TCCRAC 1 cut(s) 1178
Mox20I TGGCCA 1 cut(s) 1298
Mph1103I ATGCAT 1 cut(s) 484
MroI TCCGGA 2 cut(s) 219, 1108
MscI TGGCCA 1 cut(s) 1298
MseI TTAA 6 cut(s) 140, 186, 465, 581, 716, 1423
MslI CAYNNNNRTG 3 cut(s) 401, 414, 979
Msp20I TGGCCA 1 cut(s) 1298
MspA1I CMGCKG 2 cut(s) 257, 866
MspCI CTTAAG 1 cut(s) 139
MspI CCGG 2 cut(s) 220, 1109
MspR9I CCNGG 3 cut(s) 105, 651, 1056
Mva1269I GAATGC 1 cut(s) 464
MvaI CCWGG 3 cut(s) 105, 651, 1056
MwoI GCNNNNNNNGC 2 cut(s) 1065, 1358
NcoI CCATGG 2 cut(s) 111, 1190
NdeII GATC 6 cut(s) 147, 259, 558, 763, 1171, 1230
NlaIV GGNNCC 3 cut(s) 77, 109, 1173
NmuCI GTSAC 2 cut(s) 1084, 1318
NsiI ATGCAT 1 cut(s) 484
NspI RCATGY 2 cut(s) 482, 518
OliI CACNNNNGTG 1 cut(s) 414
PaeI GCATGC 1 cut(s) 518
PaeR7I CTCGAG 1 cut(s) 1178
PagI TCATGA 2 cut(s) 402, 819
PcsI WCGNNNNNNNCGW 1 cut(s) 1360
PctI GAATGC 1 cut(s) 464
PfeI GAWTC 2 cut(s) 961, 1211
PkrI GCNGC 2 cut(s) 520, 847
PleI GAGTC 2 cut(s) 862, 1161
PmaCI CACGTG 1 cut(s) 1355
PmlI CACGTG 1 cut(s) 1355
PpsI GAGTC 2 cut(s) 862, 1161
Ppu21I YACGTR 2 cut(s) 388, 1355
PpuMI RGGWCCY 1 cut(s) 1204
Psp5II RGGWCCY 1 cut(s) 1204
Psp6I CCWGG 3 cut(s) 103, 649, 1054
PspCI CACGTG 1 cut(s) 1355
PspFI CCCAGC 1 cut(s) 1039
PspGI CCWGG 3 cut(s) 103, 649, 1054
PspN4I GGNNCC 3 cut(s) 77, 109, 1173
PspPI GGNCC 4 cut(s) 209, 679, 1119, 1204
PspPPI RGGWCCY 1 cut(s) 1204
PspXI VCTCGAGB 1 cut(s) 1178
PsuI RGATCY 2 cut(s) 1171, 1230
PvuII CAGCTG 2 cut(s) 257, 866
RsaI GTAC 3 cut(s) 317, 386, 655
RsaNI GTAC 3 cut(s) 316, 385, 654
RseI CAYNNNNRTG 3 cut(s) 401, 414, 979
SaqAI TTAA 6 cut(s) 140, 186, 465, 581, 716, 1423
SatI GCNGC 2 cut(s) 519, 846
Sau3AI GATC 6 cut(s) 147, 259, 558, 763, 1171, 1230
Sau96I GGNCC 4 cut(s) 209, 679, 1119, 1204
SchI GAGTC 2 cut(s) 863, 1162
ScrFI CCNGG 3 cut(s) 105, 651, 1056
SduI GDGCHC 1 cut(s) 1354
SfaNI GCATC 5 cut(s) 313, 506, 559, 716, 928
SfcI CTRYAG 1 cut(s) 501
Sfr274I CTCGAG 1 cut(s) 1178
SinI GGWCC 2 cut(s) 1119, 1204
SlaI CTCGAG 1 cut(s) 1178
SmiMI CAYNNNNRTG 3 cut(s) 401, 414, 979
SmlI CTYRAG 4 cut(s) 139, 428, 1150, 1178
SmoI CTYRAG 4 cut(s) 139, 428, 1150, 1178
SpeI ACTAGT 1 cut(s) 224
SphI GCATGC 1 cut(s) 518
Sse9I AATT 9 cut(s) 538, 578, 602, 730, 767, 942, 967, 1104, 1372
SsiI CCGC 2 cut(s) 845, 1386
SspI AATATT 1 cut(s) 646
SspMI CTAG 4 cut(s) 38, 167, 225, 489
StyD4I CCNGG 3 cut(s) 103, 649, 1054
StyI CCWWGG 3 cut(s) 111, 354, 1190
TaiI ACGT 2 cut(s) 390, 1357
TaqI TCGA 2 cut(s) 1179, 1363
TasI AATT 9 cut(s) 538, 578, 602, 730, 767, 942, 967, 1104, 1372
TauI GCSGC 1 cut(s) 848
TfiI GAWTC 2 cut(s) 961, 1211
Tru1I TTAA 6 cut(s) 140, 186, 465, 581, 716, 1423
Tru9I TTAA 6 cut(s) 140, 186, 465, 581, 716, 1423
TscAI CASTG 1 cut(s) 62
TseFI GTSAC 2 cut(s) 1084, 1318
TseI GCWGC 1 cut(s) 518
Tsp45I GTSAC 2 cut(s) 1084, 1318
TspDTI ATGAA 5 cut(s) 164, 172, 391, 1225, 1298
TspRI CASTG 1 cut(s) 62
Vha464I CTTAAG 1 cut(s) 139
VpaK11BI GGWCC 2 cut(s) 1119, 1204
XapI RAATTY 3 cut(s) 538, 602, 967
XceI RCATGY 2 cut(s) 482, 518
XhoI CTCGAG 1 cut(s) 1178
XmiI GTMKAC 2 cut(s) 889, 1100
XspI CTAG 4 cut(s) 38, 167, 225, 489
Zsp2I ATGCAT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.