RLG00000011870

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0008322
Physical Location & Seq
Forward (+)
13449492 .. 13450734
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011870

Sequence Viewer

Length: 792 bp
ATGGCTCTTACACGCTTCCTCCTCCCCACCTGTCTGGTTTTACTTTCATTGCTACTCATCAACGTCTCTGCTACTGATTATGGCTATGGCCCAAAACCACCACAGGTTGAGCAACCAAAACCTCCACAGGTCCAGAAACCAGAACCACCACAGGTTGAGAAACCAACACCTCCACAGGTCTCTGCTACCGATTATGGCTATGGCCCAAAACCACCACAGGTTGAGCAACCAAAACCTCCGCAGGTCCAGAAACCAAAACCACCACAGGTTGAGAAACCAACACCTCCACAGGTCTCTACTAATGATAATGGCTATGGCCCAAAACCACCACAGGTTGAGAAACCAAAACTAGATCAGTTGTACGGAGAGCTACTACCTCACAATCTGTTCGGCATTCAAGGGCTTGTTTTATGTAACTCAGGACTTAAAGCCTTCCCAATTCAAGGAGCTGTGGCAAGGATTACATGCGTGGGCGAGGACGAAAATGGGTACGAGACTGCACCTTTCTCCATCTTAAGTGGTGCAACTGATGCAAAGGGCTACTTCTTTGCAACATTGTCACCTTCAAAGCTTGAAGGTAATTACAACAATAAGTGGCAGCTCACAGAGTGCAAGACATTCCTCGACAATTCTCCACTGGAGAGCTGCAAAGTCCCTACTGATCTCAACCATGGAATTAGTGGTGCTCCGATTACTTCTTATCGCACTATCAATGCCAAGAACATGAAGCTGTTCTCTGTTGGACCCTTCTTCTACTCCTCAGAACCTAAACCAGCCCCTGGTGGCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

264

Amino Acids

28.57

Weight (kDa)

8.15

Isoelectric Point (pI)

33.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 132 - 228 4.3e-17 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 232
AccB7I CCANNNNNTGG 1 cut(s) 779
AciI CCGC 1 cut(s) 239
AdeI CACNNNGTG 1 cut(s) 609
AfaI GTAC 2 cut(s) 362, 491
AfiI CCNNNNNNNGG 2 cut(s) 443, 779
AflII CTTAAG 1 cut(s) 514
AgsI TTSAA 4 cut(s) 398, 443, 567, 575
AjnI CCWGG 1 cut(s) 778
AluBI AGCT 6 cut(s) 370, 449, 571, 601, 645, 730
AluI AGCT 6 cut(s) 370, 449, 571, 601, 645, 730
Alw21I GWGCWC 1 cut(s) 688
Alw26I GTCTC 4 cut(s) 70, 184, 298, 488
AlwNI CAGNNNCTG 1 cut(s) 779
AoxI GGCC 3 cut(s) 88, 202, 316
ApeKI GCWGC 2 cut(s) 598, 645
Asp700I GAANNNNTTC 1 cut(s) 731
AspS9I GGNCC 6 cut(s) 89, 130, 203, 244, 317, 743
AsuHPI GGTGA 1 cut(s) 552
AvaII GGWCC 3 cut(s) 130, 244, 743
Bbv12I GWGCWC 1 cut(s) 688
BbvI GCAGC 2 cut(s) 610, 632
BccI CCATC 1 cut(s) 518
BciT130I CCWGG 1 cut(s) 780
BcoDI GTCTC 4 cut(s) 70, 184, 298, 488
BfaI CTAG 1 cut(s) 350
BfrI CTTAAG 1 cut(s) 514
BfuAI ACCTGC 1 cut(s) 232
BisI GCNGC 2 cut(s) 599, 646
BlsI GCNGC 2 cut(s) 600, 647
Bme1390I CCNGG 1 cut(s) 780
Bme18I GGWCC 3 cut(s) 130, 244, 743
BmgT120I GGNCC 6 cut(s) 89, 130, 203, 244, 317, 743
BmiI GGNNCC 1 cut(s) 745
BmrFI CCNGG 1 cut(s) 780
BmsI GCATC 1 cut(s) 520
BpmI CTGGAG 1 cut(s) 659
BsaI GGTCTC 2 cut(s) 184, 298
BsaJI CCNNGG 2 cut(s) 670, 778
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 2 cut(s) 443, 779
Bse1I ACTGG 1 cut(s) 642
Bse3DI GCAATG 1 cut(s) 47
BseBI CCWGG 1 cut(s) 780
BseDI CCNNGG 2 cut(s) 670, 778
BseLI CCNNNNNNNGG 2 cut(s) 443, 779
BseMI GCAATG 1 cut(s) 47
BseMII CTCAG 2 cut(s) 432, 774
BseNI ACTGG 1 cut(s) 642
BseRI GAGGAG 2 cut(s) 11, 748
BseXI GCAGC 2 cut(s) 610, 632
BsgI GTGCAG 1 cut(s) 483
BshFI GGCC 3 cut(s) 90, 204, 318
BsiHKAI GWGCWC 1 cut(s) 688
BslFI GGGAC 1 cut(s) 638
BslI CCNNNNNNNGG 2 cut(s) 443, 779
BsmAI GTCTC 4 cut(s) 70, 184, 298, 488
BsmBI CGTCTC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 638
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 3 cut(s) 90, 204, 318
Bso31I GGTCTC 2 cut(s) 184, 298
Bsp1286I GDGCHC 1 cut(s) 688
Bsp143I GATC 2 cut(s) 352, 661
Bsp19I CCATGG 1 cut(s) 670
BspACI CCGC 1 cut(s) 239
BspANI GGCC 3 cut(s) 90, 204, 318
BspCNI CTCAG 2 cut(s) 431, 773
BspLI GGNNCC 1 cut(s) 745
BspMI ACCTGC 1 cut(s) 232
BspTI CTTAAG 1 cut(s) 514
BspTNI GGTCTC 2 cut(s) 184, 298
BsrDI GCAATG 1 cut(s) 47
BsrI ACTGG 1 cut(s) 642
BssECI CCNNGG 2 cut(s) 670, 778
BssMI GATC 2 cut(s) 352, 661
BssT1I CCWWGG 1 cut(s) 670
Bst2UI CCWGG 1 cut(s) 780
BstAFI CTTAAG 1 cut(s) 514
BstAPI GCANNNNNTGC 1 cut(s) 530
BstDEI CTNAG 2 cut(s) 418, 760
BstDSI CCRYGG 1 cut(s) 670
BstKTI GATC 2 cut(s) 355, 664
BstMAI GTCTC 4 cut(s) 70, 184, 298, 488
BstMBI GATC 2 cut(s) 352, 661
BstMWI GCNNNNNNNGC 1 cut(s) 530
BstNI CCWGG 1 cut(s) 780
BstNSI RCATGY 1 cut(s) 468
BstSCI CCNGG 1 cut(s) 778
BstV1I GCAGC 2 cut(s) 610, 632
BstXI CCANNNNNNTGG 1 cut(s) 34
BsuRI GGCC 3 cut(s) 90, 204, 318
BtgI CCRYGG 1 cut(s) 670
BtsIMutI CAGTG 1 cut(s) 635
BveI ACCTGC 1 cut(s) 232
CaiI CAGNNNCTG 1 cut(s) 779
Cfr13I GGNCC 6 cut(s) 89, 130, 203, 244, 317, 743
Csp6I GTAC 2 cut(s) 361, 490
CviAII CATG 3 cut(s) 465, 671, 724
CviQI GTAC 2 cut(s) 361, 490
DdeI CTNAG 2 cut(s) 418, 760
DpnI GATC 2 cut(s) 354, 663
DpnII GATC 2 cut(s) 352, 661
DraIII CACNNNGTG 1 cut(s) 609
Eco130I CCWWGG 1 cut(s) 670
Eco31I GGTCTC 2 cut(s) 184, 298
Eco47I GGWCC 3 cut(s) 130, 244, 743
EcoRII CCWGG 1 cut(s) 778
EcoT14I CCWWGG 1 cut(s) 670
ErhI CCWWGG 1 cut(s) 670
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 3 cut(s) 468, 674, 727
FaiI YATR 9 cut(s) 81, 87, 195, 201, 315, 412, 466, 672, 725
FalI AAGNNNNNCTT 2 cut(s) 527, 559
FaqI GGGAC 1 cut(s) 638
FatI CATG 3 cut(s) 464, 670, 723
Fnu4HI GCNGC 2 cut(s) 599, 646
Fsp4HI GCNGC 2 cut(s) 599, 646
FspBI CTAG 1 cut(s) 350
GluI GCNGC 2 cut(s) 599, 646
GsuI CTGGAG 1 cut(s) 659
HaeIII GGCC 3 cut(s) 90, 204, 318
Hin1II CATG 3 cut(s) 468, 674, 727
HindIII AAGCTT 1 cut(s) 569
HphI GGTGA 1 cut(s) 552
Hpy188I TCNGA 2 cut(s) 690, 763
Hpy188III TCNNGA 3 cut(s) 133, 247, 420
HpyAV CCTTC 4 cut(s) 442, 569, 573, 757
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 6 cut(s) 500, 524, 533, 551, 612, 648
HpyF10VI GCNNNNNNNGC 1 cut(s) 530
HpyF3I CTNAG 2 cut(s) 418, 760
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 3 cut(s) 468, 674, 727
Kzo9I GATC 2 cut(s) 352, 661
LmnI GCTCC 2 cut(s) 446, 691
Lsp1109I GCAGC 2 cut(s) 610, 632
LweI GCATC 1 cut(s) 520
MaeI CTAG 1 cut(s) 350
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 413, 558
MalI GATC 2 cut(s) 354, 663
MboI GATC 2 cut(s) 352, 661
MboII GAAGA 1 cut(s) 742
MhlI GDGCHC 1 cut(s) 688
MluCI AATT 4 cut(s) 438, 580, 628, 675
MmeI TCCRAC 1 cut(s) 721
MroXI GAANNNNTTC 1 cut(s) 731
MseI TTAA 2 cut(s) 426, 515
MspCI CTTAAG 1 cut(s) 514
MspR9I CCNGG 1 cut(s) 780
Mva1269I GAATGC 1 cut(s) 393
MvaI CCWGG 1 cut(s) 780
MwoI GCNNNNNNNGC 1 cut(s) 530
NcoI CCATGG 1 cut(s) 670
NdeII GATC 2 cut(s) 352, 661
NlaIII CATG 3 cut(s) 468, 674, 727
NlaIV GGNNCC 1 cut(s) 745
NmuCI GTSAC 1 cut(s) 558
NspI RCATGY 1 cut(s) 468
PctI GAATGC 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 731
PflMI CCANNNNNTGG 1 cut(s) 779
PkrI GCNGC 2 cut(s) 600, 647
Psp6I CCWGG 1 cut(s) 778
PspGI CCWGG 1 cut(s) 778
PspN4I GGNNCC 1 cut(s) 745
PspPI GGNCC 6 cut(s) 89, 130, 203, 244, 317, 743
PstNI CAGNNNCTG 1 cut(s) 779
RsaI GTAC 2 cut(s) 362, 491
RsaNI GTAC 2 cut(s) 361, 490
SaqAI TTAA 2 cut(s) 426, 515
SatI GCNGC 2 cut(s) 599, 646
Sau3AI GATC 2 cut(s) 352, 661
Sau96I GGNCC 6 cut(s) 89, 130, 203, 244, 317, 743
ScrFI CCNGG 1 cut(s) 780
SduI GDGCHC 1 cut(s) 688
SfaNI GCATC 1 cut(s) 520
SinI GGWCC 3 cut(s) 130, 244, 743
SmlI CTYRAG 1 cut(s) 514
SmoI CTYRAG 1 cut(s) 514
Sse9I AATT 4 cut(s) 438, 580, 628, 675
SsiI CCGC 1 cut(s) 239
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 778
StyI CCWWGG 1 cut(s) 670
TaiI ACGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 624
TasI AATT 4 cut(s) 438, 580, 628, 675
Tru1I TTAA 2 cut(s) 426, 515
Tru9I TTAA 2 cut(s) 426, 515
TscAI CASTG 1 cut(s) 642
TseFI GTSAC 1 cut(s) 558
TseI GCWGC 2 cut(s) 598, 645
Tsp45I GTSAC 1 cut(s) 558
TspDTI ATGAA 2 cut(s) 36, 740
TspGWI ACGGA 1 cut(s) 378
TspRI CASTG 1 cut(s) 642
Van91I CCANNNNNTGG 1 cut(s) 779
Vha464I CTTAAG 1 cut(s) 514
VpaK11BI GGWCC 3 cut(s) 130, 244, 743
XceI RCATGY 1 cut(s) 468
XcmI CCANNNNNNNNNTGG 1 cut(s) 677
XmnI GAANNNNTTC 1 cut(s) 731
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.