FvH4_2g04660

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0008322
Physical Location & Seq
Forward (+)
3614341 .. 3615423
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04660.t1

Sequence Viewer

Length: 711 bp
ATGGCTCTCATTCGCTTCCTCCTTATTCCCACATGTGTGGTTTTCTTTTCATTGCTAATCGTCAGTGCCTCTGCTACTGATTATGGCTATGGTCCAAAACCACCACAGGTTGAGGAACCAAAACCTCCACAGGTTGAGAAACCAAAACCACCGCAGGTTGAAAAACCAAAACAACCACAGGTTGAGAAACCAAAACTACCAGAGGTCGAGAAACCAAAACTACCAGAGGTCGAGAAACCAAAACTACCAGAGGTCGAGAAACCAAAACTAGATCAGTTGTATGGAGAGCAACTTCCTCACAATGTCTTCGGCATTCAAGGACTTGTTTTATGTAACTCTGGCCATAAAACCTTCCCAATTCAAGGAGCTGTGGCAAGGATTAAATGTTTGGGTGAGGACGAACATGGGTATGAGACCGCACCTCTCATCATCTTAAGTGGTGCAACTGATGCAAAGGGTTACTTCTTTGCAACATTGTCAGCTTCAAAGCTTGAAGGCAACTACAACAAGAAATGGAAGTTCTCAAAGTGCACTGCGTTCCTTCACAGTTCTCCATTGGAGAGCTGCAAAGTCCCCACTGATGTCAACCATGGTATTAGTGGCGCTCCACTTGCTTCTTGTCGCACTCTCAATGCCAAGAACATGAAGTTGTTCTCTGTTGGACCCTTCTTCTACACCTCAGAACCTAAACCAGCCCCTAATGGCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

237

Amino Acids

25.93

Weight (kDa)

8.88

Isoelectric Point (pI)

32.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 105 - 201 8.5e-19 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 145
AciI CCGC 2 cut(s) 152, 417
AcoI YGGCCR 1 cut(s) 340
AfiI CCNNNNNNNGG 1 cut(s) 362
AflII CTTAAG 1 cut(s) 433
AflIII ACRYGT 1 cut(s) 32
AgsI TTSAA 5 cut(s) 161, 317, 362, 486, 494
AleI CACNNNNGTG 1 cut(s) 35
AluBI AGCT 4 cut(s) 368, 482, 490, 564
AluI AGCT 4 cut(s) 368, 482, 490, 564
Alw21I GWGCWC 1 cut(s) 533
Alw26I GTCTC 1 cut(s) 407
Alw44I GTGCAC 1 cut(s) 529
AoxI GGCC 1 cut(s) 340
ApaLI GTGCAC 1 cut(s) 529
ApeKI GCWGC 1 cut(s) 564
Asp700I GAANNNNTTC 1 cut(s) 650
AspLEI GCGC 1 cut(s) 605
AspS9I GGNCC 2 cut(s) 92, 662
AsuHPI GGTGA 1 cut(s) 404
AvaII GGWCC 2 cut(s) 92, 662
BaeGI GKGCMC 1 cut(s) 533
BalI TGGCCA 1 cut(s) 342
BbsI GAAGAC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 533
BbvI GCAGC 1 cut(s) 551
BcoDI GTCTC 1 cut(s) 407
BfaI CTAG 1 cut(s) 269
BfoI RGCGCY 1 cut(s) 606
BfrI CTTAAG 1 cut(s) 433
BfuAI ACCTGC 1 cut(s) 145
BisI GCNGC 1 cut(s) 565
BlsI GCNGC 1 cut(s) 566
Bme18I GGWCC 2 cut(s) 92, 662
BmgT120I GGNCC 2 cut(s) 92, 662
BmiI GGNNCC 2 cut(s) 117, 664
BmsI GCATC 1 cut(s) 439
BpiI GAAGAC 1 cut(s) 298
BsaI GGTCTC 1 cut(s) 407
BsaJI CCNNGG 1 cut(s) 589
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse3DI GCAATG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 589
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMI GCAATG 1 cut(s) 50
BseMII CTCAG 1 cut(s) 693
BseSI GKGCMC 1 cut(s) 533
BseXI GCAGC 1 cut(s) 551
BshFI GGCC 1 cut(s) 342
BsiHKAI GWGCWC 1 cut(s) 533
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 1 cut(s) 362
BsmAI GTCTC 1 cut(s) 407
BsmFI GGGAC 1 cut(s) 557
BsmI GAATGC 1 cut(s) 312
BsnI GGCC 1 cut(s) 342
Bso31I GGTCTC 1 cut(s) 407
Bsp1286I GDGCHC 1 cut(s) 533
Bsp143I GATC 1 cut(s) 271
Bsp19I CCATGG 1 cut(s) 589
BspACI CCGC 2 cut(s) 152, 417
BspANI GGCC 1 cut(s) 342
BspCNI CTCAG 1 cut(s) 692
BspLI GGNNCC 2 cut(s) 117, 664
BspMI ACCTGC 1 cut(s) 145
BspTI CTTAAG 1 cut(s) 433
BspTNI GGTCTC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 589
BssMI GATC 1 cut(s) 271
BssT1I CCWWGG 1 cut(s) 589
Bst4CI ACNGT 1 cut(s) 548
BstAFI CTTAAG 1 cut(s) 433
BstAPI GCANNNNNTGC 1 cut(s) 449
BstDEI CTNAG 1 cut(s) 679
BstDSI CCRYGG 1 cut(s) 589
BstH2I RGCGCY 1 cut(s) 606
BstHHI GCGC 1 cut(s) 605
BstKTI GATC 1 cut(s) 274
BstMAI GTCTC 1 cut(s) 407
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 2 cut(s) 449, 611
BstNSI RCATGY 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 533
BstV1I GCAGC 1 cut(s) 551
BstV2I GAAGAC 1 cut(s) 298
BstXI CCANNNNNNTGG 1 cut(s) 37
BsuRI GGCC 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 589
BtsI GCAGTG 1 cut(s) 531
BtsIMutI CAGTG 3 cut(s) 70, 531, 576
BveI ACCTGC 1 cut(s) 145
CfoI GCGC 1 cut(s) 605
Cfr13I GGNCC 2 cut(s) 92, 662
CviAII CATG 4 cut(s) 33, 404, 590, 643
CviJI RGCY 9 cut(s) 5, 87, 342, 368, 482, 490, 564, 695, 705
CviKI_1 RGCY 9 cut(s) 5, 87, 342, 368, 482, 490, 564, 695, 705
DdeI CTNAG 1 cut(s) 679
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 589
Eco31I GGTCTC 1 cut(s) 407
Eco47I GGWCC 2 cut(s) 92, 662
EcoT14I CCWWGG 1 cut(s) 589
ErhI CCWWGG 1 cut(s) 589
FaeI CATG 4 cut(s) 36, 407, 593, 646
FalI AAGNNNNNCTT 2 cut(s) 446, 478
FaqI GGGAC 1 cut(s) 557
FatI CATG 4 cut(s) 32, 403, 589, 642
Fnu4HI GCNGC 1 cut(s) 565
Fsp4HI GCNGC 1 cut(s) 565
FspBI CTAG 1 cut(s) 269
GlaI GCGC 1 cut(s) 604
GluI GCNGC 1 cut(s) 565
HaeII RGCGCY 1 cut(s) 606
HaeIII GGCC 1 cut(s) 342
HhaI GCGC 1 cut(s) 605
Hin1II CATG 4 cut(s) 36, 407, 593, 646
Hin6I GCGC 1 cut(s) 603
HinP1I GCGC 1 cut(s) 603
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HindIII AAGCTT 1 cut(s) 488
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 2 cut(s) 531, 586
Hpy188I TCNGA 1 cut(s) 682
Hpy188III TCNNGA 3 cut(s) 208, 232, 256
Hpy8I GTNNAC 2 cut(s) 531, 586
HpyAV CCTTC 4 cut(s) 361, 488, 551, 676
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4V TGCA 5 cut(s) 443, 452, 470, 531, 567
HpyF10VI GCNNNNNNNGC 2 cut(s) 449, 611
HpyF3I CTNAG 1 cut(s) 679
Hsp92II CATG 4 cut(s) 36, 407, 593, 646
HspAI GCGC 1 cut(s) 603
Kzo9I GATC 1 cut(s) 271
LmnI GCTCC 2 cut(s) 365, 610
LpnPI CCDG 9 cut(s) 92, 116, 140, 164, 213, 237, 261, 324, 705
Lsp1109I GCAGC 1 cut(s) 551
LweI GCATC 1 cut(s) 439
MaeI CTAG 1 cut(s) 269
MaeIII GTNAC 2 cut(s) 332, 458
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 2 cut(s) 298, 661
MhlI GDGCHC 1 cut(s) 533
MlsI TGGCCA 1 cut(s) 342
MluCI AATT 1 cut(s) 357
MluNI TGGCCA 1 cut(s) 342
MmeI TCCRAC 1 cut(s) 640
Mox20I TGGCCA 1 cut(s) 342
MroXI GAANNNNTTC 1 cut(s) 650
MscI TGGCCA 1 cut(s) 342
MseI TTAA 3 cut(s) 381, 434, 709
MslI CAYNNNNRTG 2 cut(s) 35, 408
Msp20I TGGCCA 1 cut(s) 342
MspCI CTTAAG 1 cut(s) 433
Mva1269I GAATGC 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 449, 611
NcoI CCATGG 1 cut(s) 589
NdeII GATC 1 cut(s) 271
NlaIII CATG 4 cut(s) 36, 407, 593, 646
NlaIV GGNNCC 2 cut(s) 117, 664
NspI RCATGY 1 cut(s) 36
OliI CACNNNNGTG 1 cut(s) 35
PciI ACATGT 1 cut(s) 32
PctI GAATGC 1 cut(s) 312
PdmI GAANNNNTTC 1 cut(s) 650
PkrI GCNGC 1 cut(s) 566
PscI ACATGT 1 cut(s) 32
PspN4I GGNNCC 2 cut(s) 117, 664
PspPI GGNCC 2 cut(s) 92, 662
RseI CAYNNNNRTG 2 cut(s) 35, 408
SaqAI TTAA 3 cut(s) 381, 434, 709
SatI GCNGC 1 cut(s) 565
Sau3AI GATC 1 cut(s) 271
Sau96I GGNCC 2 cut(s) 92, 662
SduI GDGCHC 1 cut(s) 533
SfaNI GCATC 1 cut(s) 439
SinI GGWCC 2 cut(s) 92, 662
SmiMI CAYNNNNRTG 2 cut(s) 35, 408
SmlI CTYRAG 1 cut(s) 433
SmoI CTYRAG 1 cut(s) 433
Sse9I AATT 1 cut(s) 357
SsiI CCGC 2 cut(s) 152, 417
SspMI CTAG 1 cut(s) 269
StyI CCWWGG 1 cut(s) 589
TaaI ACNGT 1 cut(s) 548
TaqI TCGA 3 cut(s) 207, 231, 255
TasI AATT 1 cut(s) 357
Tru1I TTAA 3 cut(s) 381, 434, 709
Tru9I TTAA 3 cut(s) 381, 434, 709
TscAI CASTG 3 cut(s) 70, 538, 583
TseI GCWGC 1 cut(s) 564
TspDTI ATGAA 2 cut(s) 39, 659
TspRI CASTG 3 cut(s) 70, 538, 583
Vha464I CTTAAG 1 cut(s) 433
VneI GTGCAC 1 cut(s) 529
VpaK11BI GGWCC 2 cut(s) 92, 662
XceI RCATGY 1 cut(s) 36
XcmI CCANNNNNNNNNTGG 1 cut(s) 596
XmnI GAANNNNTTC 1 cut(s) 650
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.