Rh6DG357800

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0008322
Physical Location & Seq
Reverse (-)
55583818 .. 55584603
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG357800.1

Sequence Viewer

Length: 435 bp
ATGCCTCTGCTACTAATTATGGCTATGGTACGGTCCAAAACCACCACAGGTTCAAAAACCAAAACCTCCACAGGTCCAGAAACCAAAACCGCCACAGGTGGAGAAACCAAAACCAGATCAGTTGTATGGAGAGCTACTACCTCACAATATATCTCTTCGGCATTCAAGGGCTTGTTTTATGCAACTCTGGCTCTAAAGCCTTCCCAATTCAAGCTTGTAGGCAACTACAACAAGAAGTGGAAGCTCACAAAGTGTACTGCATTCCTTAACAATTCTCCATTGGAGAGCTGCAAAGTCCCCACTGATGTCAACCATGGTATTAGTGGTGCTCCGCTTGCTTCTTATCGCCCTCTCAATGCCAAGAACATGAAGTTGTTTTCTGTTGGACCCTTCTTTTACACCTCAGAACCTAAACCAGCCCCTAAAGGCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

144

Amino Acids

15.72

Weight (kDa)

10.12

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 56 - 109 5.2e-06 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 90, 332
AdeI CACNNNGTG 1 cut(s) 252
AfaI GTAC 2 cut(s) 30, 256
AgsI TTSAA 3 cut(s) 54, 166, 211
AluBI AGCT 4 cut(s) 134, 214, 244, 288
AluI AGCT 4 cut(s) 134, 214, 244, 288
Alw21I GWGCWC 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 288
AspS9I GGNCC 3 cut(s) 33, 74, 386
AvaII GGWCC 3 cut(s) 33, 74, 386
Bbv12I GWGCWC 1 cut(s) 331
BbvI GCAGC 1 cut(s) 275
BisI GCNGC 1 cut(s) 289
BlsI GCNGC 1 cut(s) 290
Bme18I GGWCC 3 cut(s) 33, 74, 386
BmgT120I GGNCC 3 cut(s) 33, 74, 386
BmiI GGNNCC 1 cut(s) 388
BsaJI CCNNGG 1 cut(s) 313
BseDI CCNNGG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 417
BseXI GCAGC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 331
BslFI GGGAC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 281
BsmI GAATGC 2 cut(s) 161, 260
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 1 cut(s) 116
Bsp19I CCATGG 1 cut(s) 313
BspACI CCGC 2 cut(s) 90, 332
BspCNI CTCAG 1 cut(s) 416
BspLI GGNNCC 1 cut(s) 388
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 1 cut(s) 116
BssT1I CCWWGG 1 cut(s) 313
Bst4CI ACNGT 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 403
BstDSI CCRYGG 1 cut(s) 313
BstKTI GATC 1 cut(s) 119
BstMBI GATC 1 cut(s) 116
BstMWI GCNNNNNNNGC 2 cut(s) 188, 335
BstV1I GCAGC 1 cut(s) 275
BtgI CCRYGG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 336
Cfr13I GGNCC 3 cut(s) 33, 74, 386
Csp6I GTAC 2 cut(s) 29, 255
CviAII CATG 2 cut(s) 314, 367
CviQI GTAC 2 cut(s) 29, 255
DdeI CTNAG 1 cut(s) 403
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
DraIII CACNNNGTG 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 313
Eco47I GGWCC 3 cut(s) 33, 74, 386
EcoT14I CCWWGG 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 313
FaeI CATG 2 cut(s) 317, 370
FaiI YATR 7 cut(s) 20, 26, 127, 150, 180, 315, 368
FaqI GGGAC 1 cut(s) 281
FatI CATG 2 cut(s) 313, 366
Fnu4HI GCNGC 1 cut(s) 289
Fsp4HI GCNGC 1 cut(s) 289
GluI GCNGC 1 cut(s) 289
Hin1II CATG 2 cut(s) 317, 370
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 212
Hpy166II GTNNAC 2 cut(s) 255, 310
Hpy188I TCNGA 1 cut(s) 406
Hpy188III TCNNGA 1 cut(s) 77
Hpy8I GTNNAC 2 cut(s) 255, 310
HpyAV CCTTC 2 cut(s) 210, 400
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4V TGCA 3 cut(s) 182, 260, 291
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 335
HpyF3I CTNAG 1 cut(s) 403
Hsp92II CATG 2 cut(s) 317, 370
Kzo9I GATC 1 cut(s) 116
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 7 cut(s) 33, 57, 81, 90, 127, 173, 429
Lsp1109I GCAGC 1 cut(s) 275
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 3 cut(s) 15, 206, 271
MmeI TCCRAC 1 cut(s) 364
MnlI CCTC 5 cut(s) 15, 76, 151, 360, 412
MseI TTAA 2 cut(s) 267, 433
Mva1269I GAATGC 2 cut(s) 161, 260
MwoI GCNNNNNNNGC 2 cut(s) 188, 335
NcoI CCATGG 1 cut(s) 313
NdeII GATC 1 cut(s) 116
NlaIII CATG 2 cut(s) 317, 370
NlaIV GGNNCC 1 cut(s) 388
PctI GAATGC 2 cut(s) 161, 260
PkrI GCNGC 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 388
PspPI GGNCC 3 cut(s) 33, 74, 386
RsaI GTAC 2 cut(s) 30, 256
RsaNI GTAC 2 cut(s) 29, 255
SaqAI TTAA 2 cut(s) 267, 433
SatI GCNGC 1 cut(s) 289
Sau3AI GATC 1 cut(s) 116
Sau96I GGNCC 3 cut(s) 33, 74, 386
SduI GDGCHC 1 cut(s) 331
SinI GGWCC 3 cut(s) 33, 74, 386
Sse9I AATT 3 cut(s) 15, 206, 271
SsiI CCGC 2 cut(s) 90, 332
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 1 cut(s) 33
TasI AATT 3 cut(s) 15, 206, 271
TatI WGTACW 1 cut(s) 254
Tru1I TTAA 2 cut(s) 267, 433
Tru9I TTAA 2 cut(s) 267, 433
TscAI CASTG 1 cut(s) 307
TseI GCWGC 1 cut(s) 288
TspDTI ATGAA 1 cut(s) 383
TspRI CASTG 1 cut(s) 307
VpaK11BI GGWCC 3 cut(s) 33, 74, 386
XcmI CCANNNNNNNNNTGG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.