Rmu_ssc0000327.1_g000003

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000327.1
OG0008322
Physical Location & Seq
Reverse (-)
6192 .. 6557
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000327.1_g000003.1.cds

Sequence Viewer

Length: 366 bp
atgcatatatgcaggagctgtggcaaggattacctgtttgggtacggtaaggacgaaaatgggtacgagactgcacctctctccatcttaagcggtgcaactcatgcaaagggttacttctttgcaacattgtcaccttcaaagcttgtaggcaaatacaacaagcagtggaagctcaaaaagtgtactgcattccttaacatttctccattggagagctgcaaagtccccaccgatgtcaaccatggtattagtggtgctccgcttgcttcttatcgccctctcaatgccaagaacatgaagttgttttctgttggacccttcttctacacctcagaacctaaaccagcccctaaaggctattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

121

Amino Acids

13.3

Weight (kDa)

9.47

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 93, 263
AfaI GTAC 3 cut(s) 44, 65, 187
AflII CTTAAG 1 cut(s) 88
AgsI TTSAA 1 cut(s) 141
AluBI AGCT 4 cut(s) 18, 145, 175, 219
AluI AGCT 4 cut(s) 18, 145, 175, 219
Alw21I GWGCWC 1 cut(s) 262
Alw26I GTCTC 1 cut(s) 62
AlwNI CAGNNNCTG 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 219
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 126
AvaII GGWCC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 262
BbvI GCAGC 1 cut(s) 206
BccI CCATC 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 62
BfrI CTTAAG 1 cut(s) 88
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 206
BsgI GTGCAG 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 262
BslFI GGGAC 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 212
BsmI GAATGC 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 262
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 2 cut(s) 93, 263
BspCNI CTCAG 1 cut(s) 347
BspLI GGNNCC 1 cut(s) 319
BspTI CTTAAG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 244
BssT1I CCWWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 47
BstAFI CTTAAG 1 cut(s) 88
BstAPI GCANNNNNTGC 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 334
BstDSI CCRYGG 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 62
BstMWI GCNNNNNNNGC 3 cut(s) 104, 172, 266
BstV1I GCAGC 1 cut(s) 206
BtgI CCRYGG 1 cut(s) 244
BtsI GCAGTG 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 267
CaiI CAGNNNCTG 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 317
Csp6I GTAC 3 cut(s) 43, 64, 186
CviAII CATG 3 cut(s) 104, 245, 298
CviJI RGCY 6 cut(s) 18, 145, 175, 219, 350, 360
CviKI_1 RGCY 6 cut(s) 18, 145, 175, 219, 350, 360
CviQI GTAC 3 cut(s) 43, 64, 186
DdeI CTNAG 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 3 cut(s) 107, 248, 301
FaiI YATR 6 cut(s) 6, 8, 10, 105, 246, 299
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FaqI GGGAC 1 cut(s) 212
FatI CATG 3 cut(s) 103, 244, 297
Fnu4HI GCNGC 1 cut(s) 220
Fsp4HI GCNGC 1 cut(s) 220
GluI GCNGC 1 cut(s) 220
Hin1II CATG 3 cut(s) 107, 248, 301
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 143
HphI GGTGA 1 cut(s) 126
Hpy166II GTNNAC 2 cut(s) 186, 241
Hpy188I TCNGA 1 cut(s) 337
Hpy8I GTNNAC 2 cut(s) 186, 241
HpyAV CCTTC 2 cut(s) 147, 331
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4V TGCA 8 cut(s) 4, 12, 74, 98, 107, 125, 191, 222
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 172, 266
HpyF3I CTNAG 1 cut(s) 334
Hsp92II CATG 3 cut(s) 107, 248, 301
LmnI GCTCC 2 cut(s) 15, 265
LpnPI CCDG 2 cut(s) 47, 360
Lsp1109I GCAGC 1 cut(s) 206
MaeIII GTNAC 2 cut(s) 113, 132
MboII GAAGA 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 262
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 3 cut(s) 87, 291, 343
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 89, 198, 364
MspCI CTTAAG 1 cut(s) 88
Mva1269I GAATGC 1 cut(s) 191
MwoI GCNNNNNNNGC 3 cut(s) 104, 172, 266
NcoI CCATGG 1 cut(s) 244
NlaIII CATG 3 cut(s) 107, 248, 301
NlaIV GGNNCC 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 132
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 1 cut(s) 191
PkrI GCNGC 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 319
PspPI GGNCC 1 cut(s) 317
PstNI CAGNNNCTG 1 cut(s) 18
RsaI GTAC 3 cut(s) 44, 65, 187
RsaNI GTAC 3 cut(s) 43, 64, 186
SaqAI TTAA 3 cut(s) 89, 198, 364
SatI GCNGC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 317
SduI GDGCHC 1 cut(s) 262
SetI ASST 9 cut(s) 20, 36, 79, 139, 147, 177, 221, 335, 343
SinI GGWCC 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
SsiI CCGC 2 cut(s) 93, 263
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 1 cut(s) 47
TatI WGTACW 1 cut(s) 185
Tru1I TTAA 3 cut(s) 89, 198, 364
Tru9I TTAA 3 cut(s) 89, 198, 364
TscAI CASTG 1 cut(s) 173
TseFI GTSAC 1 cut(s) 132
TseI GCWGC 1 cut(s) 219
Tsp45I GTSAC 1 cut(s) 132
TspDTI ATGAA 1 cut(s) 314
TspRI CASTG 1 cut(s) 173
Vha464I CTTAAG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 317
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.