Rh6CG371100

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0008322
Physical Location & Seq
Reverse (-)
55784615 .. 55785669
1055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG371100.1

Sequence Viewer

Length: 816 bp
ATGGCTCTCACTCACTTCCTCCTCCCCACCTGTCTGGTTTTACTTTCATTGCTACTCATCAACGTCTCAGCTACTGATTATGGCTATGGCCCAAAACCACCACAGGTTGAGCAACCAAAACCTCCACAGGTCCAGAAACCAGAACCACCACAGCTCGAGAAACCAAAACCACCACATGTTGAGAAACCAACACCTCCACAGGTCTCTGCTACTGATTATGGCTATGGCCCAAAACCACCACAGGTTGAGCAACCAAAACCTCCGCAGGTCCAGAAACCAATAAAACCACCACAGGTTGAGAAACCAACACCTCCACAGGTCTCTACTAATGATTATGGCCATGGCCCAAAACCACAGGTTGAGAAACCAAAATTAGATCAGTTGTACGGAGAGCTACTACCTCACAATCTATTCGGCATTCAAGGGCTTGTTTTATGTAACTCAGGACTTAAAGCCTTCCCAATTCAAGGAGCTGTGGCAAGGATTACATGCGTGGGCGAGGACGAAAATGGGTACGAGACTGCACCTTTCTCCATCTTAAGTGGTGCAACTGATGCAATGGGTTACTTCTTTGCAACATTGTCACCTTCAAAGCTTGAAGGTAATTACAACAATAAGTGGAAGCTCACAGAGTGCAAGACATTCCTCGACAATTCTCCACTGGAGAGCTGCAAAGTCCCTACTGATGTCAACCATGGAATTAGTGGGGCTCTGATTGCTTCTTATCGCACTCTCAATGCCAAGAACATGAAGCTGTTCTCTGTTGGACCCTTCTTCTACTCCTCAGAACCTAAACCAGCCCCTAGTGGCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

271

Amino Acids

29.53

Weight (kDa)

8.15

Isoelectric Point (pI)

32.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 140 - 236 6.7e-17 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 256
AciI CCGC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 337
AdeI CACNNNGTG 1 cut(s) 633
AfaI GTAC 2 cut(s) 386, 515
AfiI CCNNNNNNNGG 1 cut(s) 467
AflII CTTAAG 1 cut(s) 538
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 4 cut(s) 422, 467, 591, 599
AluBI AGCT 8 cut(s) 71, 154, 394, 473, 595, 625, 669, 754
AluI AGCT 8 cut(s) 71, 154, 394, 473, 595, 625, 669, 754
Alw26I GTCTC 4 cut(s) 70, 208, 325, 512
AlwNI CAGNNNCTG 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 4 cut(s) 88, 226, 337, 343
ApeKI GCWGC 1 cut(s) 669
Asp700I GAANNNNTTC 1 cut(s) 755
AspS9I GGNCC 6 cut(s) 89, 130, 227, 268, 344, 767
AsuHPI GGTGA 1 cut(s) 576
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 3 cut(s) 130, 268, 767
BalI TGGCCA 1 cut(s) 339
BanII GRGCYC 1 cut(s) 712
BbvI GCAGC 1 cut(s) 656
BccI CCATC 1 cut(s) 542
BcoDI GTCTC 4 cut(s) 70, 208, 325, 512
BfaI CTAG 1 cut(s) 804
BfrI CTTAAG 1 cut(s) 538
BfuAI ACCTGC 1 cut(s) 256
BisI GCNGC 1 cut(s) 670
BlsI GCNGC 1 cut(s) 671
Bme18I GGWCC 3 cut(s) 130, 268, 767
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 6 cut(s) 89, 130, 227, 268, 344, 767
BmiI GGNNCC 1 cut(s) 769
BmsI GCATC 1 cut(s) 544
BpmI CTGGAG 1 cut(s) 683
BsaI GGTCTC 2 cut(s) 208, 325
BsaJI CCNNGG 2 cut(s) 340, 694
Bsc4I CCNNNNNNNGG 1 cut(s) 467
Bse1I ACTGG 1 cut(s) 666
Bse3DI GCAATG 2 cut(s) 47, 564
BseDI CCNNGG 2 cut(s) 340, 694
BseLI CCNNNNNNNGG 1 cut(s) 467
BseMI GCAATG 2 cut(s) 47, 564
BseMII CTCAG 3 cut(s) 81, 456, 798
BseNI ACTGG 1 cut(s) 666
BseRI GAGGAG 2 cut(s) 11, 772
BseXI GCAGC 1 cut(s) 656
BsgI GTGCAG 1 cut(s) 507
BshFI GGCC 4 cut(s) 90, 228, 339, 345
BsiHKCI CYCGRG 1 cut(s) 155
BslFI GGGAC 1 cut(s) 662
BslI CCNNNNNNNGG 1 cut(s) 467
BsmAI GTCTC 4 cut(s) 70, 208, 325, 512
BsmBI CGTCTC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 662
BsmI GAATGC 1 cut(s) 417
BsnI GGCC 4 cut(s) 90, 228, 339, 345
Bso31I GGTCTC 2 cut(s) 208, 325
BsoBI CYCGRG 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 712
Bsp143I GATC 1 cut(s) 376
Bsp19I CCATGG 2 cut(s) 340, 694
BspACI CCGC 1 cut(s) 263
BspANI GGCC 4 cut(s) 90, 228, 339, 345
BspCNI CTCAG 3 cut(s) 80, 455, 797
BspLI GGNNCC 1 cut(s) 769
BspMI ACCTGC 1 cut(s) 256
BspTI CTTAAG 1 cut(s) 538
BspTNI GGTCTC 2 cut(s) 208, 325
BsrDI GCAATG 2 cut(s) 47, 564
BsrI ACTGG 1 cut(s) 666
BssECI CCNNGG 2 cut(s) 340, 694
BssMI GATC 1 cut(s) 376
BssT1I CCWWGG 2 cut(s) 340, 694
BstAFI CTTAAG 1 cut(s) 538
BstAPI GCANNNNNTGC 1 cut(s) 554
BstDEI CTNAG 3 cut(s) 67, 442, 784
BstDSI CCRYGG 2 cut(s) 340, 694
BstKTI GATC 1 cut(s) 379
BstMAI GTCTC 4 cut(s) 70, 208, 325, 512
BstMBI GATC 1 cut(s) 376
BstMWI GCNNNNNNNGC 2 cut(s) 554, 716
BstNSI RCATGY 2 cut(s) 179, 492
BstV1I GCAGC 1 cut(s) 656
BstXI CCANNNNNNTGG 1 cut(s) 34
BsuRI GGCC 4 cut(s) 90, 228, 339, 345
BtgI CCRYGG 2 cut(s) 340, 694
BtsIMutI CAGTG 1 cut(s) 659
BveI ACCTGC 1 cut(s) 256
CaiI CAGNNNCTG 1 cut(s) 74
Cfr13I GGNCC 6 cut(s) 89, 130, 227, 268, 344, 767
Csp6I GTAC 2 cut(s) 385, 514
CviAII CATG 5 cut(s) 176, 341, 489, 695, 748
CviQI GTAC 2 cut(s) 385, 514
DdeI CTNAG 3 cut(s) 67, 442, 784
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
DraIII CACNNNGTG 1 cut(s) 633
EaeI YGGCCR 1 cut(s) 337
Eco130I CCWWGG 2 cut(s) 340, 694
Eco24I GRGCYC 1 cut(s) 712
Eco31I GGTCTC 2 cut(s) 208, 325
Eco47I GGWCC 3 cut(s) 130, 268, 767
Eco88I CYCGRG 1 cut(s) 155
EcoT14I CCWWGG 2 cut(s) 340, 694
EcoT38I GRGCYC 1 cut(s) 712
ErhI CCWWGG 2 cut(s) 340, 694
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 5 cut(s) 179, 344, 492, 698, 751
FaqI GGGAC 1 cut(s) 662
FatI CATG 5 cut(s) 175, 340, 488, 694, 747
Fnu4HI GCNGC 1 cut(s) 670
FriOI GRGCYC 1 cut(s) 712
Fsp4HI GCNGC 1 cut(s) 670
FspBI CTAG 1 cut(s) 804
GluI GCNGC 1 cut(s) 670
GsuI CTGGAG 1 cut(s) 683
HaeIII GGCC 4 cut(s) 90, 228, 339, 345
Hin1II CATG 5 cut(s) 179, 344, 492, 698, 751
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HindIII AAGCTT 1 cut(s) 593
HphI GGTGA 1 cut(s) 576
Hpy166II GTNNAC 1 cut(s) 691
Hpy188I TCNGA 2 cut(s) 714, 787
Hpy188III TCNNGA 4 cut(s) 133, 157, 271, 444
Hpy8I GTNNAC 1 cut(s) 691
HpyAV CCTTC 4 cut(s) 466, 593, 597, 781
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 6 cut(s) 524, 548, 557, 575, 636, 672
HpyF10VI GCNNNNNNNGC 2 cut(s) 554, 716
HpyF3I CTNAG 3 cut(s) 67, 442, 784
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 5 cut(s) 179, 344, 492, 698, 751
Kzo9I GATC 1 cut(s) 376
LmnI GCTCC 1 cut(s) 470
Lsp1109I GCAGC 1 cut(s) 656
LweI GCATC 1 cut(s) 544
MaeI CTAG 1 cut(s) 804
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 3 cut(s) 437, 563, 582
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MboII GAAGA 1 cut(s) 766
MhlI GDGCHC 1 cut(s) 712
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 5 cut(s) 371, 462, 604, 652, 699
MluNI TGGCCA 1 cut(s) 339
MmeI TCCRAC 1 cut(s) 745
Mox20I TGGCCA 1 cut(s) 339
MroXI GAANNNNTTC 1 cut(s) 755
MscI TGGCCA 1 cut(s) 339
MseI TTAA 2 cut(s) 450, 539
Msp20I TGGCCA 1 cut(s) 339
MspCI CTTAAG 1 cut(s) 538
Mva1269I GAATGC 1 cut(s) 417
MwoI GCNNNNNNNGC 2 cut(s) 554, 716
NcoI CCATGG 2 cut(s) 340, 694
NdeII GATC 1 cut(s) 376
NlaIII CATG 5 cut(s) 179, 344, 492, 698, 751
NlaIV GGNNCC 1 cut(s) 769
NmuCI GTSAC 1 cut(s) 582
NspI RCATGY 2 cut(s) 179, 492
PaeR7I CTCGAG 1 cut(s) 155
PciI ACATGT 1 cut(s) 175
PctI GAATGC 1 cut(s) 417
PdmI GAANNNNTTC 1 cut(s) 755
PkrI GCNGC 1 cut(s) 671
PscI ACATGT 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 769
PspPI GGNCC 6 cut(s) 89, 130, 227, 268, 344, 767
PstNI CAGNNNCTG 1 cut(s) 74
RsaI GTAC 2 cut(s) 386, 515
RsaNI GTAC 2 cut(s) 385, 514
SaqAI TTAA 2 cut(s) 450, 539
SatI GCNGC 1 cut(s) 670
Sau3AI GATC 1 cut(s) 376
Sau96I GGNCC 6 cut(s) 89, 130, 227, 268, 344, 767
SduI GDGCHC 1 cut(s) 712
SfaNI GCATC 1 cut(s) 544
Sfr274I CTCGAG 1 cut(s) 155
SinI GGWCC 3 cut(s) 130, 268, 767
SlaI CTCGAG 1 cut(s) 155
SmlI CTYRAG 2 cut(s) 155, 538
SmoI CTYRAG 2 cut(s) 155, 538
Sse9I AATT 5 cut(s) 371, 462, 604, 652, 699
SsiI CCGC 1 cut(s) 263
SspMI CTAG 1 cut(s) 804
StyI CCWWGG 2 cut(s) 340, 694
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 156, 648
TasI AATT 5 cut(s) 371, 462, 604, 652, 699
Tru1I TTAA 2 cut(s) 450, 539
Tru9I TTAA 2 cut(s) 450, 539
TscAI CASTG 1 cut(s) 666
TseFI GTSAC 1 cut(s) 582
TseI GCWGC 1 cut(s) 669
Tsp45I GTSAC 1 cut(s) 582
TspDTI ATGAA 2 cut(s) 36, 764
TspGWI ACGGA 1 cut(s) 402
TspRI CASTG 1 cut(s) 666
Vha464I CTTAAG 1 cut(s) 538
VpaK11BI GGWCC 3 cut(s) 130, 268, 767
XceI RCATGY 2 cut(s) 179, 492
XcmI CCANNNNNNNNNTGG 1 cut(s) 701
XhoI CTCGAG 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 755
XspI CTAG 1 cut(s) 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.