Rh6AG357100

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0008322
Physical Location & Seq
Reverse (-)
55647177 .. 55648228
1052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG357100.1

Sequence Viewer

Length: 813 bp
ATGGCTCTCACTCGGTTCCTCCTCCCCACCTGTCTGGTTTTACTTTCATTGCTACTCATCAACGTCTCAGCTACTGATTATGGCTATGGCCCAAAACCACCACAGGTTGAGCAACCAAAACCTCCACAGGTCCAGAAACCAGAACCACCACAGGCCGAGAAACCAAAACCACCACAGGTTGAGAAACCAACACCTCCACAGGTCTCTGCTAGTGATTATGGCTATGGCCCAAAACCACCACAGGTTGAGCAACCAAAACCTCCGCAGGTTGAGAAACCAAAACCACCACAGGTTGAGAAACCAACACCTCCACAGGTCTCTACTAATGATTATGGCCATGGCCCAAAACCACAGGTTGAGAAACCAAAACTAGATCAGTTGTACGGAGAGCTACTACCTCGCAATCTGTTCGGCATTCAAGGGCTTGTTTTATGTAACTCAGGACTTAAAGCCTTCCCAATTCAAGGAGCTGTGGCAAGGATTACATGCGTGGGCGAGGACGAAAATGGGTACGAGACTGCACCTTTCTCCATCTTAAGTGGTGCAACTGATGCAAAGGGTTACTTCTTTGCAACATTGTCACCTTCAAAGCTTGAAGGTAATTACAACAATAAGTGGAAGCTCACCGAGTGCAAGACATTCCTCGACAATTCTCCACTGGAGAGCTGCAAAGTCCCTACTGATGTCAACCATGGAATTAGTGGGGCTCCGATTGCTTCTTTTCGCACTCTCAATGCCAAGAACATGAAGCTTTTCTCTGTTGGACCTTTCTTCTACTCCTCAGAACCTAAACCAGCCCCTAGTGGCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

270

Amino Acids

29.35

Weight (kDa)

8.65

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 139 - 235 1.9e-17 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 256
AciI CCGC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 334
AdeI CACNNNGTG 1 cut(s) 630
AfaI GTAC 2 cut(s) 383, 512
AfiI CCNNNNNNNGG 1 cut(s) 464
AflII CTTAAG 1 cut(s) 535
AgsI TTSAA 4 cut(s) 419, 464, 588, 596
AluBI AGCT 7 cut(s) 71, 391, 470, 592, 622, 666, 751
AluI AGCT 7 cut(s) 71, 391, 470, 592, 622, 666, 751
Alw26I GTCTC 4 cut(s) 70, 208, 322, 509
AlwNI CAGNNNCTG 1 cut(s) 74
AoxI GGCC 5 cut(s) 88, 153, 226, 334, 340
ApeKI GCWGC 1 cut(s) 666
Asp700I GAANNNNTTC 1 cut(s) 752
AspS9I GGNCC 5 cut(s) 89, 130, 227, 341, 764
AsuHPI GGTGA 2 cut(s) 573, 616
AvaII GGWCC 2 cut(s) 130, 764
BalI TGGCCA 1 cut(s) 336
BanII GRGCYC 1 cut(s) 709
BbvI GCAGC 1 cut(s) 653
BccI CCATC 1 cut(s) 539
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BcoDI GTCTC 4 cut(s) 70, 208, 322, 509
BfaI CTAG 3 cut(s) 210, 371, 801
BfrI CTTAAG 1 cut(s) 535
BfuAI ACCTGC 1 cut(s) 256
BisI GCNGC 1 cut(s) 667
BlsI GCNGC 1 cut(s) 668
Bme18I GGWCC 2 cut(s) 130, 764
BmgT120I GGNCC 5 cut(s) 89, 130, 227, 341, 764
BmiI GGNNCC 2 cut(s) 17, 708
BmsI GCATC 1 cut(s) 541
BpmI CTGGAG 1 cut(s) 680
BsaI GGTCTC 2 cut(s) 208, 322
BsaJI CCNNGG 2 cut(s) 337, 691
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse1I ACTGG 1 cut(s) 663
Bse3DI GCAATG 1 cut(s) 47
BseDI CCNNGG 2 cut(s) 337, 691
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMI GCAATG 1 cut(s) 47
BseMII CTCAG 3 cut(s) 81, 453, 795
BseNI ACTGG 1 cut(s) 663
BseRI GAGGAG 2 cut(s) 11, 769
BseXI GCAGC 1 cut(s) 653
BsgI GTGCAG 1 cut(s) 504
BshFI GGCC 5 cut(s) 90, 155, 228, 336, 342
BslFI GGGAC 1 cut(s) 659
BslI CCNNNNNNNGG 1 cut(s) 464
BsmAI GTCTC 4 cut(s) 70, 208, 322, 509
BsmBI CGTCTC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 659
BsmI GAATGC 1 cut(s) 414
BsnI GGCC 5 cut(s) 90, 155, 228, 336, 342
Bso31I GGTCTC 2 cut(s) 208, 322
Bsp1286I GDGCHC 1 cut(s) 709
Bsp143I GATC 1 cut(s) 373
Bsp19I CCATGG 2 cut(s) 337, 691
BspACI CCGC 1 cut(s) 263
BspANI GGCC 5 cut(s) 90, 155, 228, 336, 342
BspCNI CTCAG 3 cut(s) 80, 452, 794
BspLI GGNNCC 2 cut(s) 17, 708
BspMI ACCTGC 1 cut(s) 256
BspTI CTTAAG 1 cut(s) 535
BspTNI GGTCTC 2 cut(s) 208, 322
BsrDI GCAATG 1 cut(s) 47
BsrI ACTGG 1 cut(s) 663
BssECI CCNNGG 2 cut(s) 337, 691
BssMI GATC 1 cut(s) 373
BssT1I CCWWGG 2 cut(s) 337, 691
BstAFI CTTAAG 1 cut(s) 535
BstAPI GCANNNNNTGC 1 cut(s) 551
BstDEI CTNAG 3 cut(s) 67, 439, 781
BstDSI CCRYGG 2 cut(s) 337, 691
BstKTI GATC 1 cut(s) 376
BstMAI GTCTC 4 cut(s) 70, 208, 322, 509
BstMBI GATC 1 cut(s) 373
BstMWI GCNNNNNNNGC 2 cut(s) 551, 713
BstNSI RCATGY 1 cut(s) 489
BstV1I GCAGC 1 cut(s) 653
BstXI CCANNNNNNTGG 1 cut(s) 34
BsuRI GGCC 5 cut(s) 90, 155, 228, 336, 342
BtgI CCRYGG 2 cut(s) 337, 691
BtsIMutI CAGTG 1 cut(s) 656
BveI ACCTGC 1 cut(s) 256
CaiI CAGNNNCTG 1 cut(s) 74
Cfr13I GGNCC 5 cut(s) 89, 130, 227, 341, 764
Csp6I GTAC 2 cut(s) 382, 511
CviAII CATG 4 cut(s) 338, 486, 692, 745
CviQI GTAC 2 cut(s) 382, 511
DdeI CTNAG 3 cut(s) 67, 439, 781
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
DraIII CACNNNGTG 1 cut(s) 630
EaeI YGGCCR 1 cut(s) 334
Eco130I CCWWGG 2 cut(s) 337, 691
Eco24I GRGCYC 1 cut(s) 709
Eco31I GGTCTC 2 cut(s) 208, 322
Eco47I GGWCC 2 cut(s) 130, 764
EcoT14I CCWWGG 2 cut(s) 337, 691
EcoT38I GRGCYC 1 cut(s) 709
ErhI CCWWGG 2 cut(s) 337, 691
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 4 cut(s) 341, 489, 695, 748
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 1 cut(s) 659
FatI CATG 4 cut(s) 337, 485, 691, 744
Fnu4HI GCNGC 1 cut(s) 667
FriOI GRGCYC 1 cut(s) 709
Fsp4HI GCNGC 1 cut(s) 667
FspBI CTAG 3 cut(s) 210, 371, 801
GluI GCNGC 1 cut(s) 667
GsuI CTGGAG 1 cut(s) 680
HaeIII GGCC 5 cut(s) 90, 155, 228, 336, 342
Hin1II CATG 4 cut(s) 341, 489, 695, 748
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HindIII AAGCTT 2 cut(s) 590, 749
HphI GGTGA 2 cut(s) 573, 616
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 2 cut(s) 711, 784
Hpy188III TCNNGA 2 cut(s) 133, 441
Hpy8I GTNNAC 1 cut(s) 688
HpyAV CCTTC 3 cut(s) 463, 590, 594
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 6 cut(s) 521, 545, 554, 572, 633, 669
HpyF10VI GCNNNNNNNGC 2 cut(s) 551, 713
HpyF3I CTNAG 3 cut(s) 67, 439, 781
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 4 cut(s) 341, 489, 695, 748
Kzo9I GATC 1 cut(s) 373
LmnI GCTCC 2 cut(s) 467, 712
Lsp1109I GCAGC 1 cut(s) 653
LweI GCATC 1 cut(s) 541
MaeI CTAG 3 cut(s) 210, 371, 801
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 3 cut(s) 434, 560, 579
MalI GATC 1 cut(s) 375
MboI GATC 1 cut(s) 373
MboII GAAGA 1 cut(s) 763
MhlI GDGCHC 1 cut(s) 709
MlsI TGGCCA 1 cut(s) 336
MluCI AATT 4 cut(s) 459, 601, 649, 696
MluNI TGGCCA 1 cut(s) 336
MmeI TCCRAC 1 cut(s) 742
Mox20I TGGCCA 1 cut(s) 336
MroXI GAANNNNTTC 1 cut(s) 752
MscI TGGCCA 1 cut(s) 336
MseI TTAA 2 cut(s) 447, 536
Msp20I TGGCCA 1 cut(s) 336
MspCI CTTAAG 1 cut(s) 535
Mva1269I GAATGC 1 cut(s) 414
MwoI GCNNNNNNNGC 2 cut(s) 551, 713
NcoI CCATGG 2 cut(s) 337, 691
NdeII GATC 1 cut(s) 373
NlaIII CATG 4 cut(s) 341, 489, 695, 748
NlaIV GGNNCC 2 cut(s) 17, 708
NmeAIII GCCGAG 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 579
NspI RCATGY 1 cut(s) 489
PctI GAATGC 1 cut(s) 414
PdmI GAANNNNTTC 1 cut(s) 752
PkrI GCNGC 1 cut(s) 668
PspN4I GGNNCC 2 cut(s) 17, 708
PspPI GGNCC 5 cut(s) 89, 130, 227, 341, 764
PstNI CAGNNNCTG 1 cut(s) 74
RsaI GTAC 2 cut(s) 383, 512
RsaNI GTAC 2 cut(s) 382, 511
SaqAI TTAA 2 cut(s) 447, 536
SatI GCNGC 1 cut(s) 667
Sau3AI GATC 1 cut(s) 373
Sau96I GGNCC 5 cut(s) 89, 130, 227, 341, 764
SduI GDGCHC 1 cut(s) 709
SfaNI GCATC 1 cut(s) 541
SinI GGWCC 2 cut(s) 130, 764
SmlI CTYRAG 1 cut(s) 535
SmoI CTYRAG 1 cut(s) 535
Sse9I AATT 4 cut(s) 459, 601, 649, 696
SsiI CCGC 1 cut(s) 263
SspMI CTAG 3 cut(s) 210, 371, 801
StyI CCWWGG 2 cut(s) 337, 691
TaiI ACGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 645
TasI AATT 4 cut(s) 459, 601, 649, 696
Tru1I TTAA 2 cut(s) 447, 536
Tru9I TTAA 2 cut(s) 447, 536
TscAI CASTG 1 cut(s) 663
TseFI GTSAC 1 cut(s) 579
TseI GCWGC 1 cut(s) 666
Tsp45I GTSAC 1 cut(s) 579
TspDTI ATGAA 2 cut(s) 36, 761
TspGWI ACGGA 1 cut(s) 399
TspRI CASTG 1 cut(s) 663
Vha464I CTTAAG 1 cut(s) 535
VpaK11BI GGWCC 2 cut(s) 130, 764
XceI RCATGY 1 cut(s) 489
XcmI CCANNNNNNNNNTGG 1 cut(s) 698
XmnI GAANNNNTTC 1 cut(s) 752
XspI CTAG 3 cut(s) 210, 371, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.