Rh6DG357900

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0008322
Physical Location & Seq
Reverse (-)
55590365 .. 55590721
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG357900.1

Sequence Viewer

Length: 357 bp
ATGCATGCAGGAGCTGTGGCAAGGATTACATGCGTGGGCGAGGACGAAAATGGGTACGAGACTGCACCTTTCTCCATCTTAAGTGGTGCAACTGATGCAAAGGGTTACTTCTTTGCAACATTGTCACCTTCAAAGCTTGAAGGTAATTACAACAATAAGTGGAAGCTCACAGAGTGCAAGACATTCCTCGACAATTCTCCACTGGAGAGCTGCAAAGTCCCTACTGATGTCAACCATGGAATTAGTGGAGCTCCGATTGCTTCTTATCGCACTCTCAATGCCAAGAACATGAAGCTGTTCTCTGTTGGACCCTTCTTCTACTCCTCAGAACCTAAACCAGCCCCCAGTGGCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

118

Amino Acids

12.74

Weight (kDa)

6.71

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 3 - 83 4.1e-14 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 174
AfaI GTAC 1 cut(s) 56
AflII CTTAAG 1 cut(s) 79
AgsI TTSAA 2 cut(s) 132, 140
AluBI AGCT 6 cut(s) 14, 136, 166, 210, 251, 295
AluI AGCT 6 cut(s) 14, 136, 166, 210, 251, 295
Alw21I GWGCWC 1 cut(s) 253
Alw26I GTCTC 1 cut(s) 53
AlwNI CAGNNNCTG 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 210
Asp700I GAANNNNTTC 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 308
AsuHPI GGTGA 1 cut(s) 117
AvaII GGWCC 1 cut(s) 308
BanII GRGCYC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 197
BccI CCATC 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 53
BfrI CTTAAG 1 cut(s) 79
BisI GCNGC 1 cut(s) 211
BlsI GCNGC 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 308
BmiI GGNNCC 1 cut(s) 310
BmrI ACTGGG 1 cut(s) 339
BmsI GCATC 1 cut(s) 85
BmuI ACTGGG 1 cut(s) 339
BpmI CTGGAG 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 235
Bse1I ACTGG 2 cut(s) 207, 345
BseDI CCNNGG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 2 cut(s) 207, 345
BseRI GAGGAG 1 cut(s) 313
BseXI GCAGC 1 cut(s) 197
BsgI GTGCAG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 253
BslFI GGGAC 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 253
Bsp19I CCATGG 1 cut(s) 235
BspCNI CTCAG 1 cut(s) 338
BspLI GGNNCC 1 cut(s) 310
BspTI CTTAAG 1 cut(s) 79
BsrI ACTGG 2 cut(s) 207, 345
BssECI CCNNGG 1 cut(s) 235
BssT1I CCWWGG 1 cut(s) 235
BstAFI CTTAAG 1 cut(s) 79
BstAPI GCANNNNNTGC 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 325
BstDSI CCRYGG 1 cut(s) 235
BstMAI GTCTC 1 cut(s) 53
BstMWI GCNNNNNNNGC 2 cut(s) 95, 257
BstNSI RCATGY 2 cut(s) 8, 33
BstV1I GCAGC 1 cut(s) 197
BtgI CCRYGG 1 cut(s) 235
BtsIMutI CAGTG 2 cut(s) 200, 352
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 308
Csp6I GTAC 1 cut(s) 55
CviAII CATG 4 cut(s) 5, 30, 236, 289
CviJI RGCY 8 cut(s) 14, 136, 166, 210, 251, 295, 341, 351
CviKI_1 RGCY 8 cut(s) 14, 136, 166, 210, 251, 295, 341, 351
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 1 cut(s) 325
DraIII CACNNNGTG 1 cut(s) 174
Ecl136II GAGCTC 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 308
Eco53kI GAGCTC 1 cut(s) 251
EcoICRI GAGCTC 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 235
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 4 cut(s) 8, 33, 239, 292
FaiI YATR 4 cut(s) 6, 31, 237, 290
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FaqI GGGAC 1 cut(s) 203
FatI CATG 4 cut(s) 4, 29, 235, 288
Fnu4HI GCNGC 1 cut(s) 211
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 1 cut(s) 211
GluI GCNGC 1 cut(s) 211
GsuI CTGGAG 1 cut(s) 224
Hin1II CATG 4 cut(s) 8, 33, 239, 292
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HindIII AAGCTT 1 cut(s) 134
HphI GGTGA 1 cut(s) 117
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 2 cut(s) 255, 328
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 3 cut(s) 134, 138, 322
HpyCH4V TGCA 8 cut(s) 4, 8, 65, 89, 98, 116, 177, 213
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 257
HpyF3I CTNAG 1 cut(s) 325
Hsp92II CATG 4 cut(s) 8, 33, 239, 292
LmnI GCTCC 3 cut(s) 11, 248, 256
LpnPI CCDG 2 cut(s) 188, 351
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 1 cut(s) 85
MaeIII GTNAC 2 cut(s) 104, 123
MboII GAAGA 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 3 cut(s) 145, 193, 240
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 3 cut(s) 34, 197, 334
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 296
MseI TTAA 1 cut(s) 80
MspCI CTTAAG 1 cut(s) 79
MwoI GCNNNNNNNGC 2 cut(s) 95, 257
NcoI CCATGG 1 cut(s) 235
NlaIII CATG 4 cut(s) 8, 33, 239, 292
NlaIV GGNNCC 1 cut(s) 310
NmuCI GTSAC 1 cut(s) 123
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 33
PaeI GCATGC 1 cut(s) 8
PdmI GAANNNNTTC 1 cut(s) 296
PkrI GCNGC 1 cut(s) 212
Psp124BI GAGCTC 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 310
PspPI GGNCC 1 cut(s) 308
PstNI CAGNNNCTG 1 cut(s) 14
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SacI GAGCTC 1 cut(s) 253
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 1 cut(s) 211
Sau96I GGNCC 1 cut(s) 308
SduI GDGCHC 1 cut(s) 253
SfaNI GCATC 1 cut(s) 85
SinI GGWCC 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
SphI GCATGC 1 cut(s) 8
Sse9I AATT 3 cut(s) 145, 193, 240
SstI GAGCTC 1 cut(s) 253
StyI CCWWGG 1 cut(s) 235
TaqI TCGA 1 cut(s) 189
TasI AATT 3 cut(s) 145, 193, 240
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TscAI CASTG 2 cut(s) 207, 352
TseFI GTSAC 1 cut(s) 123
TseI GCWGC 1 cut(s) 210
Tsp45I GTSAC 1 cut(s) 123
TspDTI ATGAA 1 cut(s) 305
TspRI CASTG 2 cut(s) 207, 352
Vha464I CTTAAG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 308
XceI RCATGY 2 cut(s) 8, 33
XcmI CCANNNNNNNNNTGG 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 296
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.